Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

27026680 .. 27028743

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGTGGTCTTGGCCGGAGAGTGTGTTATCAAATGGGGAAAGGGTGAAGGAAGAGTTGATGCAAGGGCGTGAGCTTGCAGGTCAACTTTGTAGGGTTTTTGATGATCACAAGTCAACACTTGTTAGTGGTTTTGGTGGTGGTGGTGGTGGTTCGGCTGAGGATCTTGTTGATAAGATTTTGGGATCATTTGCAAATACCCTTTTGATCTTAAATGGAAAAGAATCTGACGGGGAGATTGTTTCTGGTGATCAGATTCAAGGGATCAGTAGTGGTGGTGGCTCTGCAGATTCATCATCTTGGGATGCAAATCATACGGCGGCTGTTATTAAGTCTGAAGATTTTTATGAGGAGAGTTGTAAGACTACTTCAACCTTCAAGGATCGTAGAGGTTCTTACAAGAGAAGAAAGACTTCACACTCTTGGACTAGAGACACTCATGCTTTGACAGACGACGGTCATGGATGGAGAAAATACGGACAAAAACGCATCCTTAATTCCAAGCACTCAAGGAATTACTATAGGTGCACTCACAAGTTCGAACAATCTTGCAAAGCAACCAAATACGTGCAACAAATTCAAGATCATCCACCAATGTTTCGGACCACATATCATGGCAACCACACATGCAGAGACTTGGATTGTACAAGTCCTAGAGAGTCTTCAAATTTCATCAGATTTGGCGACACCAAACAAAATCATCCCTTTTTCTCATTCTTCACATCAGTTAAAAAAGAAGAATTGGTCTTCAAGGACGAATTGATCATTAAGAAAGAGATACCACCAACAAGTGATGATCGTGTGATGACAAGCCACAACAACTATTCATGGTTGTGTGATTATCTTGTGTCACCCGATTTGACGACGTTCGAGTCCTTTGGGCCCTCGAACGGGGTCTCATCAACCCTCGATGAGTTTGATCATGAGGATGTGATTTCTAGGTTAATGATGGGGTCTTTTGACTTGGATGAATTATTGCAATATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

330

Amino Acids

37.29

Weight (kDa)

5.72

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	871
Acc36I	ACCTGC	1 cut(s)	71
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	4 cut(s)	171, 193, 272, 390
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	576, 667
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	646
AfiI	CCNNNNNNNGG	2 cut(s)	890, 891
AgsI	TTSAA	6 cut(s)	260, 372, 379, 581, 666, 751
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	3 cut(s)	426, 627, 901
Alw44I	GTGCAC	1 cut(s)	526
AlwI	GGATC	4 cut(s)	171, 193, 272, 390
AoxI	GGCC	2 cut(s)	14, 881
ApaI	GGGCCC	1 cut(s)	885
ApaLI	GTGCAC	1 cut(s)	526
ApoI	RAATTY	2 cut(s)	576, 667
Asp700I	GAANNNNTTC	1 cut(s)	412
AspS9I	GGNCC	3 cut(s)	603, 881, 882
AsuHPI	GGTGA	3 cut(s)	58, 260, 843
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	2 cut(s)	530, 885
BanII	GRGCYC	1 cut(s)	885
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	2 cut(s)	654, 739
Bbv12I	GWGCWC	1 cut(s)	530
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	459, 943
BceAI	ACGGC	1 cut(s)	333
BclI	TGATCA	4 cut(s)	106, 250, 762, 919
BcoDI	GTCTC	3 cut(s)	426, 627, 901
BfaI	CTAG	3 cut(s)	429, 654, 939
BfmI	CTRYAG	2 cut(s)	285, 520
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	3 cut(s)	603, 881, 882
BmiI	GGNNCC	1 cut(s)	883
BmsI	GCATC	3 cut(s)	51, 295, 498
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	654, 739
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	890, 891
Bse8I	GATNNNNATC	1 cut(s)	309
BseGI	GGATG	7 cut(s)	310, 470, 489, 586, 700, 934, 973
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	890, 891
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	2 cut(s)	530, 885
BshFI	GGCC	2 cut(s)	16, 883
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	890, 891
BsmAI	GTCTC	3 cut(s)	426, 627, 901
BsnI	GGCC	2 cut(s)	16, 883
Bso31I	GGTCTC	1 cut(s)	901
Bsp119I	TTCGAA	1 cut(s)	540
Bsp120I	GGGCCC	1 cut(s)	881
Bsp1286I	GDGCHC	2 cut(s)	530, 885
Bsp1407I	TGTACA	1 cut(s)	644
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	16, 883
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	883
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	71
BspPI	GGATC	4 cut(s)	171, 193, 272, 390
BspT104I	TTCGAA	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	901
BsrGI	TGTACA	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	310, 470, 489, 586, 700, 934, 973
BstMAI	GTCTC	3 cut(s)	426, 627, 901
BstNSI	RCATGY	1 cut(s)	630
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	285, 520
BstSLI	GKGCMC	2 cut(s)	530, 885
BstV2I	GAAGAC	2 cut(s)	654, 739
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	16, 883
BtsCI	GGATG	7 cut(s)	310, 470, 489, 586, 700, 934, 973
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	3 cut(s)	603, 881, 882
Csp6I	GTAC	1 cut(s)	645
CviAII	CATG	6 cut(s)	440, 461, 614, 627, 828, 923
CviJI	RGCY	7 cut(s)	16, 76, 158, 282, 323, 813, 883
CviKI_1	RGCY	7 cut(s)	16, 76, 158, 282, 323, 813, 883
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	871
DseDI	GACNNNNNNGTC	1 cut(s)	871
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	885
FaeI	CATG	6 cut(s)	443, 464, 617, 630, 831, 926
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	6 cut(s)	439, 460, 613, 626, 827, 922
FbaI	TGATCA	4 cut(s)	106, 250, 762, 919
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	7 cut(s)	317, 476, 477, 573, 687, 941, 980
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	3 cut(s)	429, 654, 939
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	16, 883
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	6 cut(s)	443, 464, 617, 630, 831, 926
HincII	GTYRAC	2 cut(s)	86, 117
HindII	GTYRAC	2 cut(s)	86, 117
HinfI	GANTC	5 cut(s)	224, 256, 290, 659, 872
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	58, 260, 843
Hpy166II	GTNNAC	3 cut(s)	86, 117, 528
Hpy188I	TCNGA	5 cut(s)	229, 255, 337, 603, 677
Hpy188III	TCNNGA	2 cut(s)	581, 923
Hpy8I	GTNNAC	3 cut(s)	86, 117, 528
Hpy99I	CGWCG	2 cut(s)	458, 868
HpyAV	CCTTC	2 cut(s)	43, 385
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	567, 866
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	567, 866
Hsp92II	CATG	6 cut(s)	443, 464, 617, 630, 831, 926
Ksp22I	TGATCA	4 cut(s)	106, 250, 762, 919
LpnPI	CCDG	3 cut(s)	30, 66, 231
LweI	GCATC	3 cut(s)	51, 295, 498
MaeI	CTAG	3 cut(s)	429, 654, 939
MaeII	ACGT	2 cut(s)	567, 866
MaeIII	GTNAC	1 cut(s)	849
MboII	GAAGA	7 cut(s)	65, 350, 417, 654, 709, 739, 749
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	530, 885
MluCI	AATT	7 cut(s)	496, 514, 576, 667, 740, 758, 971
MlyI	GAGTC	2 cut(s)	668, 881
MnlI	CCTC	6 cut(s)	154, 343, 383, 895, 917, 919
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	6 cut(s)	212, 330, 495, 729, 768, 944
MslI	CAYNNNNRTG	2 cut(s)	832, 927
MspI	CCGG	1 cut(s)	17
NlaIII	CATG	6 cut(s)	443, 464, 617, 630, 831, 926
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	849
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	540
PagI	TCATGA	1 cut(s)	922
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	224, 256, 290
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	667, 880
PpsI	GAGTC	2 cut(s)	667, 880
Ppu21I	YACGTR	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	883
PspOMI	GGGCCC	1 cut(s)	881
PspPI	GGNCC	3 cut(s)	603, 881, 882
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
RseI	CAYNNNNRTG	2 cut(s)	832, 927
SaqAI	TTAA	6 cut(s)	212, 330, 495, 729, 768, 944
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	3 cut(s)	603, 881, 882
SchI	GAGTC	2 cut(s)	668, 881
SduI	GDGCHC	2 cut(s)	530, 885
SetI	ASST	8 cut(s)	78, 85, 377, 394, 527, 570, 869, 944
SfaNI	GCATC	3 cut(s)	51, 295, 498
SfcI	CTRYAG	2 cut(s)	285, 520
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	832, 927
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	7 cut(s)	496, 514, 576, 667, 740, 758, 971
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	3 cut(s)	429, 654, 939
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	570, 869
TaqI	TCGA	4 cut(s)	540, 870, 887, 909
TasI	AATT	7 cut(s)	496, 514, 576, 667, 740, 758, 971
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	224, 256, 290
Tru1I	TTAA	6 cut(s)	212, 330, 495, 729, 768, 944
Tru9I	TTAA	6 cut(s)	212, 330, 495, 729, 768, 944
TseFI	GTSAC	1 cut(s)	849
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	4 cut(s)	282, 661, 816, 984
TspGWI	ACGGA	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	2 cut(s)	576, 667
XceI	RCATGY	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	3 cut(s)	429, 654, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.