FvH4_6g09730
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5791521 .. 5796809
5289 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09730.t1

Sequence Viewer

Length: 1008 bp
ATGGAATGGACTTGGCTGGAAAGTGTGTCGTCCAACAGGCAAACGACGATGGAGGAGCTGGTTCAAGGCCGGGAGATGGCTAATCAGCTTCGGGGGGTTCTCAGTAGTGACGTCAGATCGGCGGAGGGTCTTGTGATGAAGATCTTGGGGTCGCTCACCGACACCCTTCTTATCTTGAATGGCAGTCAAGTGGACGCTAAGGAGGAGCTCATTTCTCAGGTTCAAGCCAATAGTAGTACTAGTTCTGTTACTGCTTCTGGTTCTGCTACTGCTGGCCCAGATTCATCGTCTTGGGATTTTGTTCCTGAAGATGCTATGAAGTCGAAGGATTCGAATGAAGAGAGTTGCAAGAGTACCGAAACGTTTAAGGATCGCAGGGGTTCTTACAAGAGAAGAAAAACTTCACATTCATGCACCAAAGACACTCTGGATTTAGTGGATGATGGTCACGCATGGAGAAAGTACGGACAAAAGATTATCCTAAATACCACACATCCAAGGAACTACTTCAGATGCACTCATAAATTTGATCAAGGCTGCAAAGCAATTAAACACGTCCAAAGGATTAAAGATGAACCCCGACTCTTTCGGACCACATACTATGACAATCACACATGCATCGACTATCTCAGAGCTCCGGAACTAATCTTAGATTGTTCAAGTCGCGAAGACTCTTCCCAGAAAATAATCCGATTCGACACCACCGATAACACTTTGACCTTCAAACAAGAACATCCTTTTTTCTCAGCCTTCACATCGATCAAAAACGAGGGTGTCAAGGAAGAAGAGATGATCAAACCAATTAGTGATCACGATCACGTGACCTACCACAACCAGTCACCGTCGTCGTCTGCTTATCTCATGCCGCCCGGTCTAGGTGTGTTTGAGTCGTCTGGCGGGACCTCCAATGGTTTCTCATCGACTATCGCATACGATCACGATGATGTGATTTCTAGTATGATGGTTGAATATTTCGATAATGAAGTAGATTTTCCATATGAGTTTTGA

Protein Analysis

336

Amino Acids

37.9

Weight (kDa)

5.26

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 147 - 206 4.3e-23 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 3 cut(s) 122, 866, 897
AclI AACGTT 1 cut(s) 362
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 2 cut(s) 327, 493
AcvI CACGTG 1 cut(s) 820
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 238, 355, 464
AfiI CCNNNNNNNGG 2 cut(s) 76, 875
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 6 cut(s) 65, 178, 224, 660, 724, 968
AhlI ACTAGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 556
AluBI AGCT 4 cut(s) 58, 88, 208, 635
AluI AGCT 4 cut(s) 58, 88, 208, 635
Alw21I GWGCWC 2 cut(s) 210, 637
AlwI GGATC 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 2 cut(s) 67, 274
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 1 cut(s) 524
Asp700I GAANNNNTTC 2 cut(s) 400, 506
AspS9I GGNCC 3 cut(s) 275, 591, 900
AsuC2I CCSGG 2 cut(s) 71, 870
AsuHPI GGTGA 2 cut(s) 148, 831
AsuII TTCGAA 1 cut(s) 332
AvaII GGWCC 2 cut(s) 591, 900
BanII GRGCYC 2 cut(s) 210, 637
BbrPI CACGTG 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 210, 637
BbvI GCAGC 1 cut(s) 524
BccI CCATC 4 cut(s) 43, 70, 437, 955
BclI TGATCA 3 cut(s) 529, 792, 808
BcnI CCSGG 2 cut(s) 71, 870
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 3 cut(s) 240, 875, 954
BglII AGATCT 1 cut(s) 141
BisI GCNGC 2 cut(s) 538, 866
BlsI GCNGC 2 cut(s) 539, 867
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 71, 870
Bme18I GGWCC 2 cut(s) 591, 900
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 275, 591, 900
BmiI GGNNCC 1 cut(s) 901
BmrFI CCNGG 2 cut(s) 71, 870
BmsI GCATC 3 cut(s) 301, 503, 627
BpiI GAAGAC 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 71, 870
Bsa29I ATCGAT 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 820
BsaBI GATNNNNATC 2 cut(s) 140, 813
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 497
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 875
Bse1I ACTGG 1 cut(s) 835
Bse8I GATNNNNATC 2 cut(s) 140, 813
BseAI TCCGGA 1 cut(s) 637
BseCI ATCGAT 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 3 cut(s) 445, 493, 733
BseJI GATNNNNATC 2 cut(s) 140, 813
BseLI CCNNNNNNNGG 2 cut(s) 76, 875
BseMII CTCAG 4 cut(s) 115, 230, 643, 759
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 2 cut(s) 68, 218
BseXI GCAGC 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 2 cut(s) 69, 276
BshVI ATCGAT 1 cut(s) 758
BsiHKAI GWGCWC 2 cut(s) 210, 637
BsiSI CCGG 3 cut(s) 70, 638, 870
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 2 cut(s) 76, 875
BsmFI GGGAC 1 cut(s) 913
BsnI GGCC 2 cut(s) 69, 276
Bsp119I TTCGAA 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 210, 637
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
Bsp68I TCGCGA 1 cut(s) 666
BspACI CCGC 3 cut(s) 122, 866, 897
BspANI GGCC 2 cut(s) 69, 276
BspCNI CTCAG 4 cut(s) 114, 229, 642, 758
BspDI ATCGAT 1 cut(s) 758
BspEI TCCGGA 1 cut(s) 637
BspFNI CGCG 1 cut(s) 666
BspLI GGNNCC 1 cut(s) 901
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 332
BsrI ACTGG 1 cut(s) 835
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 3 cut(s) 333, 679, 780
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 820
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 6 cut(s) 101, 198, 216, 629, 649, 745
BstF5I GGATG 3 cut(s) 445, 493, 733
BstFNI CGCG 1 cut(s) 666
BstKTI GATC 9 cut(s) 119, 144, 373, 532, 762, 795, 811, 817, 937
BstMBI GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 69, 868
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 758
BsuRI GGCC 2 cut(s) 69, 276
BsuTUI ATCGAT 1 cut(s) 758
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 3 cut(s) 445, 493, 733
BtuMI TCGCGA 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 275, 591, 900
ClaI ATCGAT 1 cut(s) 758
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 237, 354, 463
CviAII CATG 4 cut(s) 411, 453, 615, 862
CviQI GTAC 3 cut(s) 237, 354, 463
DdeI CTNAG 6 cut(s) 101, 198, 216, 629, 649, 745
DpnI GATC 9 cut(s) 118, 143, 372, 531, 761, 794, 810, 816, 936
DpnII GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
Eam1104I CTCTTC 3 cut(s) 333, 679, 780
EarI CTCTTC 3 cut(s) 333, 679, 780
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 2 cut(s) 208, 635
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 2 cut(s) 210, 637
Eco47I GGWCC 2 cut(s) 591, 900
Eco53kI GAGCTC 2 cut(s) 208, 635
Eco57I CTGAAG 2 cut(s) 327, 493
Eco72I CACGTG 1 cut(s) 820
EcoICRI GAGCTC 2 cut(s) 208, 635
EcoO109I RGGNCCY 1 cut(s) 900
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 620
EcoT38I GRGCYC 2 cut(s) 210, 637
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 4 cut(s) 414, 456, 618, 865
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FaqI GGGAC 1 cut(s) 913
FatI CATG 4 cut(s) 410, 452, 614, 861
FauI CCCGC 1 cut(s) 890
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 3 cut(s) 529, 792, 808
Fnu4HI GCNGC 2 cut(s) 538, 866
FokI GGATG 3 cut(s) 452, 480, 720
FriOI GRGCYC 2 cut(s) 210, 637
Fsp4HI GCNGC 2 cut(s) 538, 866
FspBI CTAG 3 cut(s) 240, 875, 954
GluI GCNGC 2 cut(s) 538, 866
HaeIII GGCC 2 cut(s) 69, 276
HapII CCGG 3 cut(s) 70, 638, 870
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 4 cut(s) 414, 456, 618, 865
HinfI GANTC 6 cut(s) 281, 329, 582, 671, 693, 887
HpaII CCGG 3 cut(s) 70, 638, 870
HphI GGTGA 2 cut(s) 148, 831
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 116, 512, 591, 632, 692
Hpy188III TCNNGA 7 cut(s) 175, 305, 428, 638, 665, 812, 938
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 3 cut(s) 49, 847, 850
HpyAV CCTTC 4 cut(s) 176, 319, 730, 760
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 4 cut(s) 111, 362, 555, 819
HpyCH4V TGCA 5 cut(s) 348, 414, 516, 540, 618
HpyF3I CTNAG 6 cut(s) 101, 198, 216, 629, 649, 745
HpySE526I ACGT 4 cut(s) 111, 362, 555, 819
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 4 cut(s) 414, 456, 618, 865
Kpn2I TCCGGA 1 cut(s) 637
Ksp22I TGATCA 3 cut(s) 529, 792, 808
Kzo9I GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
LmnI GCTCC 3 cut(s) 55, 205, 640
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 3 cut(s) 301, 503, 627
MaeI CTAG 3 cut(s) 240, 875, 954
MaeII ACGT 4 cut(s) 111, 362, 555, 819
MaeIII GTNAC 5 cut(s) 107, 247, 446, 820, 837
MalI GATC 9 cut(s) 118, 143, 372, 531, 761, 794, 810, 816, 936
MboI GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
MboII GAAGA 8 cut(s) 151, 320, 350, 405, 666, 680, 794, 797
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 210, 637
MluCI AATT 3 cut(s) 524, 546, 801
MlyI GAGTC 3 cut(s) 576, 665, 896
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 46, 118, 196, 763, 913
Mph1103I ATGCAT 1 cut(s) 620
MroI TCCGGA 1 cut(s) 637
MroXI GAANNNNTTC 2 cut(s) 400, 506
MseI TTAA 3 cut(s) 366, 549, 567
MslI CAYNNNNRTG 2 cut(s) 409, 942
MspI CCGG 3 cut(s) 70, 638, 870
MspR9I CCNGG 2 cut(s) 71, 870
MvnI CGCG 1 cut(s) 666
NciI CCSGG 2 cut(s) 71, 870
NdeI CATATG 1 cut(s) 997
NdeII GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
NlaIII CATG 4 cut(s) 414, 456, 618, 865
NlaIV GGNNCC 1 cut(s) 901
NmuCI GTSAC 4 cut(s) 107, 446, 820, 837
NruI TCGCGA 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 620
NspI RCATGY 1 cut(s) 618
NspV TTCGAA 1 cut(s) 332
PcsI WCGNNNNNNNCGW 2 cut(s) 329, 702
PdmI GAANNNNTTC 2 cut(s) 400, 506
PfeI GAWTC 3 cut(s) 281, 329, 693
PkrI GCNGC 2 cut(s) 539, 867
PleI GAGTC 3 cut(s) 576, 665, 895
PmaCI CACGTG 1 cut(s) 820
PmlI CACGTG 1 cut(s) 820
PpsI GAGTC 3 cut(s) 576, 665, 895
Ppu21I YACGTR 1 cut(s) 820
PpuMI RGGWCCY 1 cut(s) 900
Psp124BI GAGCTC 2 cut(s) 210, 637
Psp1406I AACGTT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 900
PspCI CACGTG 1 cut(s) 820
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 3 cut(s) 275, 591, 900
PspPPI RGGWCCY 1 cut(s) 900
PsrI GAACNNNNNNTAC 2 cut(s) 226, 258
PsuI RGATCY 1 cut(s) 141
RruI TCGCGA 1 cut(s) 666
RsaI GTAC 3 cut(s) 238, 355, 464
RsaNI GTAC 3 cut(s) 237, 354, 463
RseI CAYNNNNRTG 2 cut(s) 409, 942
SacI GAGCTC 2 cut(s) 210, 637
SaqAI TTAA 3 cut(s) 366, 549, 567
SatI GCNGC 2 cut(s) 538, 866
Sau3AI GATC 9 cut(s) 116, 141, 370, 529, 759, 792, 808, 814, 934
Sau96I GGNCC 3 cut(s) 275, 591, 900
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 3 cut(s) 576, 665, 896
ScrFI CCNGG 2 cut(s) 71, 870
SduI GDGCHC 2 cut(s) 210, 637
SfaNI GCATC 3 cut(s) 301, 503, 627
SfuI TTCGAA 1 cut(s) 332
SinI GGWCC 2 cut(s) 591, 900
SmiMI CAYNNNNRTG 2 cut(s) 409, 942
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 3 cut(s) 524, 546, 801
SsiI CCGC 3 cut(s) 122, 866, 897
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 240, 875, 954
SstI GAGCTC 2 cut(s) 210, 637
StyD4I CCNGG 2 cut(s) 69, 868
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 4 cut(s) 114, 365, 558, 822
TaqI TCGA 7 cut(s) 323, 332, 621, 696, 758, 920, 975
TasI AATT 3 cut(s) 524, 546, 801
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 3 cut(s) 281, 329, 693
Tru1I TTAA 3 cut(s) 366, 549, 567
Tru9I TTAA 3 cut(s) 366, 549, 567
TseFI GTSAC 4 cut(s) 107, 446, 820, 837
TseI GCWGC 1 cut(s) 537
Tsp45I GTSAC 4 cut(s) 107, 446, 820, 837
TspDTI ATGAA 7 cut(s) 152, 273, 332, 351, 399, 588, 996
TspGWI ACGGA 1 cut(s) 480
VpaK11BI GGWCC 2 cut(s) 591, 900
XapI RAATTY 1 cut(s) 524
XceI RCATGY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmnI GAANNNNTTC 2 cut(s) 400, 506
XspI CTAG 3 cut(s) 240, 875, 954
ZraI GACGTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.