Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

41374004 .. 41375651

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGTCATTGGGGTGTACTTGGCCAGCTTCATCGAATCTTCAGGAAAAGATGAAGGAAGAGCTTGTCCGAGGGCATGAACTTGCGAATCAACTTCACTTGGTTGTCGGTAATGGTGATGGTGAATCGGCCAAAGGTCTTGCTACGAAGATCGTGTGCTCGTTCACTAATAGCCTTTCCCTCTTAGGTGGGAATCATGATTCTAAGGGGAAGCATATTCAAGCCAATACTAGTAGCAATACTGTTGCTCTTCCTACTCTTGTAGATTCATCATCCAGGGTTGCTCTTGAGGCTATTAAGAGTACGGAAATGTTGATAAATAGTAGAAGTTCTTCTAAGAAAAGAAAAACTTCACACTCATGGAGTAGAGACGCTCCCGATTTCATTGATGATGGTCATACATGGAGAAAGTACGGACAGAAACAGATCCTTAATGCCAGCCATCCAAGGGGCTACTTTAGGTGCAGTCATAAGTATGATCAAGGCTGCAAGGCGACCAAGCAGGTGCAGAAAGTTGAAGATGATCCATCCTTGTTTCGGACTACATATTTCGGAAACCACTCATGCAAACATAGCATACTCAAAGCTCCTGAAAGCATCCTTGATAACGTAAGCGGTGGTAGTCTTAGTGAAGAGTCTAATTCCAAGTTTATGATCACATTTGAGAACAACTTCTTCCCGTACGAACAAGAACACCCCTTTTTCTCATCCTACTCATCAACCGAAAGAGAGATCATTAAATCTAATCATGTGGCGAGCAGCCGGTCATCATCACTATCTTGTGATTATCTTGTGCCACCTGATCAAGTAATGGTGTTCGAGTCGTCTGAGCCCATCAGCAGGTTGCCAACAATGATGGAGCTTCACTCTGAGGACACGATCACATTTGAGAACAACAACAACTTCCAGTACGAACAAGAACACCCTTTTTTCTCATCCTACTCATCAACCGAAAGAGAGATCATTAAATCTAATCATGTGGCGAGCAGCCAGTCATCATCACTATCTTGTGATTATCTTGTGCTACCTGATCCAGTGATGGTGTTCGAGTCGTCTGAAACCATCAGCAGGTTGTCAACAATGATGAAGCTTCACTCTGAGGACATGATTTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

373

Amino Acids

41.8

Weight (kDa)

5.89

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	130 - 190	8.7e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	3 cut(s)	493, 831, 1059
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	3 cut(s)	421, 518, 1025
AcoI	YGGCCR	2 cut(s)	23, 129
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	5 cut(s)	19, 304, 413, 683, 911
AfiI	CCNNNNNNNGG	4 cut(s)	448, 537, 840, 1068
AgsI	TTSAA	2 cut(s)	221, 518
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	5 cut(s)	29, 64, 587, 862, 1090
AluI	AGCT	5 cut(s)	29, 64, 587, 862, 1090
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	3 cut(s)	421, 518, 1025
AoxI	GGCC	2 cut(s)	23, 129
ApeKI	GCWGC	3 cut(s)	486, 759, 987
Asp700I	GAANNNNTTC	3 cut(s)	331, 349, 671
AsuHPI	GGTGA	2 cut(s)	128, 134
BalI	TGGCCA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	834
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	473, 771, 999
BccI	CCATC	8 cut(s)	113, 386, 450, 535, 842, 850, 1033, 1070
BciT130I	CCWGG	1 cut(s)	277
BclI	TGATCA	3 cut(s)	478, 654, 802
BcoDI	GTCTC	1 cut(s)	363
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	3 cut(s)	493, 831, 1059
BisI	GCNGC	3 cut(s)	487, 760, 988
BlsI	GCNGC	3 cut(s)	488, 761, 989
Bme1390I	CCNGG	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	70, 276, 446
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 537, 840, 1068
Bse118I	RCCGGY	1 cut(s)	762
Bse1I	ACTGG	3 cut(s)	907, 991, 1034
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	70, 276, 446
BseGI	GGATG	6 cut(s)	272, 442, 527, 597, 707, 935
BseLI	CCNNNNNNNGG	4 cut(s)	448, 537, 840, 1068
BseMII	CTCAG	3 cut(s)	819, 861, 1089
BseNI	ACTGG	3 cut(s)	907, 991, 1034
BseXI	GCAGC	3 cut(s)	473, 771, 999
BsgI	GTGCAG	2 cut(s)	484, 527
BshFI	GGCC	2 cut(s)	25, 131
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	763
BsiWI	CGTACG	1 cut(s)	681
BslI	CCNNNNNNNGG	4 cut(s)	448, 537, 840, 1068
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	25, 131
Bsp1286I	GDGCHC	2 cut(s)	161, 834
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	2 cut(s)	25, 131
BspCNI	CTCAG	3 cut(s)	820, 862, 1090
BspHI	TCATGA	1 cut(s)	196
BspMI	ACCTGC	3 cut(s)	493, 831, 1059
BspPI	GGATC	3 cut(s)	421, 518, 1025
BspQI	GCTCTTC	2 cut(s)	54, 255
BsrFI	RCCGGY	1 cut(s)	762
BsrI	ACTGG	3 cut(s)	907, 991, 1034
BssAI	RCCGGY	1 cut(s)	762
BssECI	CCNNGG	3 cut(s)	70, 276, 446
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	3 cut(s)	54, 255, 627
BstC8I	GCNNGC	4 cut(s)	27, 439, 757, 985
BstDEI	CTNAG	7 cut(s)	184, 204, 336, 626, 828, 870, 1098
BstF5I	GGATG	6 cut(s)	272, 442, 527, 597, 707, 935
BstMAI	GTCTC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 573
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	473, 771, 999
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	25, 131
BtsCI	GGATG	6 cut(s)	272, 442, 527, 597, 707, 935
BtsIMutI	CAGTG	1 cut(s)	1041
BveI	ACCTGC	3 cut(s)	493, 831, 1059
Cac8I	GCNNGC	4 cut(s)	27, 439, 757, 985
CciI	TCATGA	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	762
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	5 cut(s)	18, 303, 412, 682, 910
CviAII	CATG	8 cut(s)	77, 197, 360, 402, 564, 749, 977, 1105
CviQI	GTAC	5 cut(s)	18, 303, 412, 682, 910
DdeI	CTNAG	7 cut(s)	184, 204, 336, 626, 828, 870, 1098
EaeI	YGGCCR	2 cut(s)	23, 129
Eam1104I	CTCTTC	3 cut(s)	54, 255, 627
EarI	CTCTTC	3 cut(s)	54, 255, 627
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	8 cut(s)	80, 200, 363, 405, 567, 752, 980, 1108
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	8 cut(s)	76, 196, 359, 401, 563, 748, 976, 1104
FbaI	TGATCA	3 cut(s)	478, 654, 802
Fnu4HI	GCNGC	3 cut(s)	487, 760, 988
FokI	GGATG	6 cut(s)	259, 429, 514, 584, 694, 922
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	3 cut(s)	487, 760, 988
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	3 cut(s)	487, 760, 988
HaeIII	GGCC	2 cut(s)	25, 131
HapII	CCGG	1 cut(s)	763
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	80, 200, 363, 405, 567, 752, 980, 1108
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HindIII	AAGCTT	1 cut(s)	1088
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	2 cut(s)	128, 134
Hpy166II	GTNNAC	3 cut(s)	18, 165, 1077
Hpy188I	TCNGA	7 cut(s)	71, 540, 554, 829, 871, 1057, 1099
Hpy188III	TCNNGA	5 cut(s)	44, 197, 287, 377, 590
Hpy8I	GTNNAC	3 cut(s)	18, 165, 1077
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	4 cut(s)	465, 489, 508, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 573
HpyF3I	CTNAG	7 cut(s)	184, 204, 336, 626, 828, 870, 1098
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	8 cut(s)	80, 200, 363, 405, 567, 752, 980, 1108
Ksp22I	TGATCA	3 cut(s)	478, 654, 802
LguI	GCTCTTC	2 cut(s)	54, 255
LmnI	GCTCC	3 cut(s)	379, 592, 859
Lsp1109I	GCAGC	3 cut(s)	473, 771, 999
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	609
MboII	GAAGA	8 cut(s)	32, 71, 160, 242, 324, 530, 644, 667
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	161, 834
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	1 cut(s)	640
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	4 cut(s)	14, 644, 830, 1058
MnlI	CCTC	5 cut(s)	65, 191, 283, 865, 1093
Mox20I	TGGCCA	1 cut(s)	25
MroXI	GAANNNNTTC	3 cut(s)	331, 349, 671
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	4 cut(s)	297, 432, 738, 966
MslI	CAYNNNNRTG	3 cut(s)	13, 358, 474
Msp20I	TGGCCA	1 cut(s)	25
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	290, 573
NlaIII	CATG	8 cut(s)	80, 200, 363, 405, 567, 752, 980, 1108
PagI	TCATGA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	493
PciSI	GCTCTTC	2 cut(s)	54, 255
PdmI	GAANNNNTTC	3 cut(s)	331, 349, 671
PfeI	GAWTC	6 cut(s)	37, 88, 125, 193, 200, 266
Pfl23II	CGTACG	1 cut(s)	681
PkrI	GCNGC	3 cut(s)	488, 761, 989
PleI	GAGTC	4 cut(s)	13, 643, 829, 1057
PpsI	GAGTC	4 cut(s)	13, 643, 829, 1057
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspLI	CGTACG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	426
RsaI	GTAC	5 cut(s)	19, 304, 413, 683, 911
RsaNI	GTAC	5 cut(s)	18, 303, 412, 682, 910
RseI	CAYNNNNRTG	3 cut(s)	13, 358, 474
SapI	GCTCTTC	2 cut(s)	54, 255
SaqAI	TTAA	4 cut(s)	297, 432, 738, 966
SatI	GCNGC	3 cut(s)	487, 760, 988
SchI	GAGTC	4 cut(s)	14, 644, 830, 1058
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	161, 834
SfaNI	GCATC	1 cut(s)	606
SmiMI	CAYNNNNRTG	3 cut(s)	13, 358, 474
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	615
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	35, 819, 1047
TasI	AATT	1 cut(s)	640
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	6 cut(s)	37, 88, 125, 193, 200, 266
Tru1I	TTAA	4 cut(s)	297, 432, 738, 966
Tru9I	TTAA	4 cut(s)	297, 432, 738, 966
TscAI	CASTG	1 cut(s)	1041
TseI	GCWGC	3 cut(s)	486, 759, 987
TspDTI	ATGAA	6 cut(s)	21, 68, 93, 258, 373, 1100
TspGWI	ACGGA	2 cut(s)	320, 429
TspRI	CASTG	1 cut(s)	1041
XmnI	GAANNNNTTC	3 cut(s)	331, 349, 671
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.