Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

3256224 .. 3261987

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATGAATTCAATTGTGGAGATTCATCCCAAAGAATTGAAGTTCGTAGTTGAGTTGAAGAAGCAAAGCTCATGCTCAATTCGACTTACCAACACGTCCGACCACCATGTTGCTTTTAAGGTTAAAACTACATCCCCCAAGAAATACTGTGTGCGACCAAATGTAGGTGTTATCTTGCCAAAATCAGCTTGTGAATTTTCAGTTACAATGCAAGCTCAAAAGACAGCTCTGCCTGACATGGATTGCAGAGATAAGTTCTTAATCCAAAGCACAATTGTTTCCTCTGGGACAACTGACGCGCATATTACAGCTAGCATGTTTGCTAAAGATGAGGGCAAATACGTTGAAGAGAAAAAGCTAAGAGTAATCCTTATCAGCCCACCTGATTCGCCAATACTGTCACCAATCAAGGTAGAGTTGAAGCAAGGGCAGGGCAATGAAGCTTCAATACTAAATGATCAAGTATTCGGTGGAGTAGAAACCCTCCCTCAACACAAAATGGTTACAAAGGATGTGAAGTTCAGAGTTGTCAATAGTGAGGAGTCAAAGCCATCAAAGGATACTGAGCTGAAACCAGCCAAGCATGTGGAATTGAAACTAAGAAAAGAAGAGGAGTTGAAACCAGCAAAGGCTGTGGAATTGAAATTACCAAAATATGAGGAGGTAAAAGCAATAAAGGATGTGGAGTCAAGGCCAACATATGCTACGGACGTGGAACCAGCCAGAGATGTGGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAAACCTGCAAAGAATGTGGAGTTGAAACCATCAGAGGATTTGCTTTTGAAACTAGCAAAAGATGTGGAGGCTGATAAAGCACAGGTTGTGGAAAATTTGAAGTTAGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTTGAACTTGAACTAAAGCTGAGCCAGGCTGAAGTTACTATCTCAAAGCTAACAGAGGAGAGGAGTTCAAGCATCCAAGAGATAAAAGATTTACAGGAGCAATTAGGGCATTTGAGTAAAGGTGGTGTGCAACGAGTTGAGTTCCCTCTCCTATTTGGTTGCACGGTGGCACTTTTTAGTGTTCTTCTTGTTACAGCTATAGCTGTTAAAAGTTTGTGCATGAAGGTAGTATCATCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

381

Amino Acids

42.45

Weight (kDa)

7.58

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	6 - 110	3.8e-31	MSP (Major sperm protein) domain
Cep192_D6	PF22076	6 - 73	5.9e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccII	CGCG	1 cut(s)	299
AcsI	RAATTY	3 cut(s)	7, 194, 859
AcuI	CTGAAG	1 cut(s)	954
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	93
AjiI	CACGTC	2 cut(s)	96, 712
AjnI	CCWGG	1 cut(s)	927
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AoxI	GGCC	1 cut(s)	692
ApoI	RAATTY	3 cut(s)	7, 194, 859
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	393
AsuNHI	GCTAGC	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BccI	CCATC	2 cut(s)	559, 802
BciT130I	CCWGG	1 cut(s)	929
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	2 cut(s)	312, 818
BfmI	CTRYAG	1 cut(s)	1101
BfuAI	ACCTGC	1 cut(s)	778
BfuI	GTATCC	1 cut(s)	553
BlpI	GCTNAGC	1 cut(s)	923
Bme1390I	CCNGG	1 cut(s)	929
BmgBI	CACGTC	2 cut(s)	96, 712
BmiI	GGNNCC	2 cut(s)	717, 744
BmrFI	CCNGG	1 cut(s)	929
BmsI	GCATC	1 cut(s)	984
BmtI	GCTAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	929
BseGI	GGATG	6 cut(s)	25, 131, 517, 685, 975, 1136
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	555, 914
BseRI	GAGGAG	6 cut(s)	554, 626, 674, 899, 974, 979
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	694
Bsp143I	GATC	1 cut(s)	457
Bsp1720I	GCTNAGC	1 cut(s)	923
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	2 cut(s)	556, 915
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	717, 744
BspMI	ACCTGC	1 cut(s)	778
BspOI	GCTAGC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	442
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	3 cut(s)	149, 399, 1069
Bst6I	CTCTTC	2 cut(s)	342, 603
BstC8I	GCNNGC	2 cut(s)	213, 313
BstDEI	CTNAG	4 cut(s)	359, 564, 599, 923
BstF5I	GGATG	6 cut(s)	25, 131, 517, 685, 975, 1136
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 1009
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	2 cut(s)	319, 587
BstSCI	CCNGG	1 cut(s)	927
BstSFI	CTRYAG	1 cut(s)	1101
BstUI	CGCG	1 cut(s)	299
BstXI	CCANNNNNNTGG	2 cut(s)	586, 730
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	694
BtrI	CACGTC	2 cut(s)	96, 712
BtsCI	GGATG	6 cut(s)	25, 131, 517, 685, 975, 1136
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	213, 313
CfoI	GCGC	1 cut(s)	301
CseI	GACGC	1 cut(s)	305
CspCI	CAANNNNNGTGG	6 cut(s)	615, 650, 762, 797, 810, 845
CviAII	CATG	6 cut(s)	72, 107, 238, 316, 584, 1123
DdeI	CTNAG	4 cut(s)	359, 564, 599, 923
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	342, 603
EarI	CTCTTC	2 cut(s)	342, 603
Eco57I	CTGAAG	1 cut(s)	954
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	927
FaeI	CATG	6 cut(s)	75, 110, 241, 319, 587, 1126
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	6 cut(s)	71, 106, 237, 315, 583, 1122
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	457
FokI	GGATG	6 cut(s)	12, 118, 524, 692, 962, 1123
FspBI	CTAG	2 cut(s)	312, 818
GlaI	GCGC	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	694
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	6 cut(s)	75, 110, 241, 319, 587, 1126
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	22, 386, 542, 686
HphI	GGTGA	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	100, 524, 799, 1145
HpyAV	CCTTC	1 cut(s)	1120
HpyCH4III	ACNGT	3 cut(s)	149, 399, 1069
HpyCH4IV	ACGT	3 cut(s)	95, 342, 711
HpyCH4V	TGCA	6 cut(s)	211, 246, 773, 1033, 1065, 1122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 1009
HpyF3I	CTNAG	4 cut(s)	359, 564, 599, 923
HpySE526I	ACGT	3 cut(s)	95, 342, 711
Hsp92II	CATG	6 cut(s)	75, 110, 241, 319, 587, 1126
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	1000
LweI	GCATC	1 cut(s)	984
MaeI	CTAG	2 cut(s)	312, 818
MaeII	ACGT	3 cut(s)	95, 342, 711
MaeIII	GTNAC	5 cut(s)	202, 399, 502, 937, 1093
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	70, 359, 620, 1079
MfeI	CAATTG	2 cut(s)	12, 273
MlyI	GAGTC	2 cut(s)	551, 695
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	5 cut(s)	117, 123, 260, 873, 1110
MspR9I	CCNGG	1 cut(s)	929
MunI	CAATTG	2 cut(s)	12, 273
MvaI	CCWGG	1 cut(s)	929
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	842, 1009
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	1 cut(s)	457
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	6 cut(s)	75, 110, 241, 319, 587, 1126
NlaIV	GGNNCC	2 cut(s)	717, 744
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	2 cut(s)	319, 587
PfeI	GAWTC	2 cut(s)	22, 386
PleI	GAGTC	2 cut(s)	550, 694
PpsI	GAGTC	2 cut(s)	550, 694
Psp6I	CCWGG	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	2 cut(s)	717, 744
SaqAI	TTAA	5 cut(s)	117, 123, 260, 873, 1110
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	551, 695
ScrFI	CCNGG	1 cut(s)	929
SfaNI	GCATC	1 cut(s)	984
SfcI	CTRYAG	1 cut(s)	1101
SspMI	CTAG	2 cut(s)	312, 818
StyD4I	CCNGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	149, 399, 1069
TaiI	ACGT	3 cut(s)	98, 345, 714
TaqI	TCGA	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	22, 386
Tru1I	TTAA	5 cut(s)	117, 123, 260, 873, 1110
Tru9I	TTAA	5 cut(s)	117, 123, 260, 873, 1110
TseFI	GTSAC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	5 cut(s)	14, 20, 453, 905, 1139
TspGWI	ACGGA	1 cut(s)	722
XapI	RAATTY	3 cut(s)	7, 194, 859
XceI	RCATGY	2 cut(s)	319, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XspI	CTAG	2 cut(s)	312, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.