Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Forward (+)

5781642 .. 5783579

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTGTACTTGGCCAGCTTCACGGAAACTTCAGGAAAAGGTAAAGGAAGAGCTGCTCCGAGGGCATGAACTTGCGAATCAGCTTCGCTTGGTAGTCGGTAATGGTGATGGTGGATTATTGGCCAAAGGTTTTGTTAAGAAGATCGGGTGCTCGTTCACGAGTTGCCTTTCCCTCTTAACTGGGAATCATGAGTCTAAGGGGGAGTATATTCAAGTCAGTACAGGTCGTAGTACTTTTGCTCTTCCTACTATAGTAGAATCATCATCCAGCTGGGATGCTCTCAAGACGATCAAGAGTAGGGAAACGTTTACGGATAGTGGTAGTTCTTCCAAGAAAAGGAAAACTTCACACTCATGGAGTAGAGACGCTCCTGATTTCATTGATGATGGTCATGCATGGAGAAAGTACGGACAGAAACAGATCCTTAATGCCAGGCACCCAAGGAGCTACTTCAGGTGCAGTCATAAGTATGAACAAGGTTGCAAGGCGACCAAGCAGGTGCAGAAAGTTGAAGATGATCCGTCGTTGTTTCGGACTACATATTTCGGAAATCACACATGCAATCATAGCTTACTCAAATCTCCTGAACTCATCCTTGATAACGTAATCGGTGGTAGTCCCATAGAAGAGTCTAATTCCATGTTTACGATCACATTTGAGAACAACAACTTACCTTACGAACTAGAACACCCCTTTTTCTCATCCAACACATCAATCGAAAGAGAGATCATTAAATCTAATCATGTGGTGAGCAGCCATTCATCATCACTATCTTTTGATTATCTTGTGCAACGAGATCAACCGATGCTGTTCGAGTCATCTGAGCCGGCCAGCAGCAGGTTGCCAGCAATGATGGAATACTTTGCGCAAGAAATTTTGCCAATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

298

Amino Acids

33.54

Weight (kDa)

7.17

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	129 - 189	5.7e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc16I	TGCGCA	1 cut(s)	870
Acc36I	ACCTGC	2 cut(s)	490, 831
AccB1I	GGYRCC	1 cut(s)	438
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	2 cut(s)	418, 515
AcoI	YGGCCR	3 cut(s)	14, 123, 831
AcsI	RAATTY	1 cut(s)	876
AcuI	CTGAAG	2 cut(s)	17, 439
AfaI	GTAC	4 cut(s)	10, 223, 235, 410
AfiI	CCNNNNNNNGG	2 cut(s)	339, 840
AgsI	TTSAA	2 cut(s)	215, 515
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	6 cut(s)	20, 55, 85, 273, 450, 573
AluI	AGCT	6 cut(s)	20, 55, 85, 273, 450, 573
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	418, 515
AoxI	GGCC	3 cut(s)	14, 123, 831
ApeKI	GCWGC	3 cut(s)	55, 756, 837
ApoI	RAATTY	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	871
AsuHPI	GGTGA	2 cut(s)	119, 763
BalI	TGGCCA	2 cut(s)	16, 125
BanI	GGYRCC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	42, 768, 849
BccI	CCATC	3 cut(s)	104, 383, 850
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	2 cut(s)	490, 831
BisI	GCNGC	3 cut(s)	56, 757, 838
BlsI	GCNGC	3 cut(s)	57, 758, 839
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	268, 798
BmuI	ACTGGG	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	61, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 840
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	61, 443
BseGI	GGATG	4 cut(s)	266, 283, 594, 704
BseLI	CCNNNNNNNGG	2 cut(s)	339, 840
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	42, 768, 849
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	2 cut(s)	481, 524
BshFI	GGCC	3 cut(s)	16, 125, 833
BshNI	GGYRCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	339, 840
BsmAI	GTCTC	1 cut(s)	360
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	16, 125, 833
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
BspANI	GGCC	3 cut(s)	16, 125, 833
BspCNI	CTCAG	1 cut(s)	817
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	440
BspMI	ACCTGC	2 cut(s)	490, 831
BspPI	GGATC	2 cut(s)	418, 515
BspQI	GCTCTTC	2 cut(s)	45, 249
BspT107I	GGYRCC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	858
BsrFI	RCCGGY	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	2 cut(s)	61, 443
BssMI	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	3 cut(s)	45, 249, 624
BstC8I	GCNNGC	4 cut(s)	18, 831, 835, 849
BstDEI	CTNAG	2 cut(s)	198, 825
BstF5I	GGATG	4 cut(s)	266, 283, 594, 704
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	7 cut(s)	147, 294, 426, 523, 654, 732, 802
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 570
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	42, 768, 849
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	16, 125, 833
BtsCI	GGATG	4 cut(s)	266, 283, 594, 704
BveI	ACCTGC	2 cut(s)	490, 831
Cac8I	GCNNGC	4 cut(s)	18, 831, 835, 849
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	871
Cfr10I	RCCGGY	1 cut(s)	829
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	9, 222, 234, 409
CviAII	CATG	8 cut(s)	68, 191, 357, 395, 399, 561, 643, 746
CviQI	GTAC	4 cut(s)	9, 222, 234, 409
DdeI	CTNAG	2 cut(s)	198, 825
DpnI	GATC	7 cut(s)	146, 293, 425, 522, 653, 731, 801
DpnII	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
EaeI	YGGCCR	3 cut(s)	14, 123, 831
Eam1104I	CTCTTC	3 cut(s)	45, 249, 624
EarI	CTCTTC	3 cut(s)	45, 249, 624
Eco130I	CCWWGG	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	17, 439
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	8 cut(s)	71, 194, 360, 398, 402, 564, 646, 749
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	8 cut(s)	67, 190, 356, 394, 398, 560, 642, 745
Fnu4HI	GCNGC	3 cut(s)	56, 757, 838
FokI	GGATG	4 cut(s)	253, 290, 581, 691
Fsp4HI	GCNGC	3 cut(s)	56, 757, 838
FspBI	CTAG	1 cut(s)	686
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	3 cut(s)	56, 757, 838
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	16, 125, 833
HapII	CCGG	1 cut(s)	830
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	8 cut(s)	71, 194, 360, 398, 402, 564, 646, 749
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HinfI	GANTC	6 cut(s)	79, 187, 194, 260, 632, 818
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	119, 763
Hpy166II	GTNNAC	4 cut(s)	9, 159, 312, 648
Hpy188I	TCNGA	4 cut(s)	62, 537, 551, 826
Hpy188III	TCNNGA	7 cut(s)	35, 160, 191, 286, 295, 374, 587
Hpy8I	GTNNAC	4 cut(s)	9, 159, 312, 648
Hpy99I	CGWCG	1 cut(s)	529
HpyCH4IV	ACGT	2 cut(s)	308, 606
HpyCH4V	TGCA	6 cut(s)	398, 462, 486, 505, 564, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 570
HpyF3I	CTNAG	2 cut(s)	198, 825
HpySE526I	ACGT	2 cut(s)	308, 606
Hsp92II	CATG	8 cut(s)	71, 194, 360, 398, 402, 564, 646, 749
HspAI	GCGC	1 cut(s)	869
KroI	GCCGGC	1 cut(s)	829
KroNI	GCCGGC	1 cut(s)	831
Kzo9I	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
LguI	GCTCTTC	2 cut(s)	45, 249
LmnI	GCTCC	3 cut(s)	63, 376, 447
Lsp1109I	GCAGC	3 cut(s)	42, 768, 849
LweI	GCATC	2 cut(s)	268, 798
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	2 cut(s)	308, 606
MalI	GATC	7 cut(s)	146, 293, 425, 522, 653, 731, 801
MboI	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
MboII	GAAGA	6 cut(s)	62, 154, 236, 321, 527, 641
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	2 cut(s)	16, 125
MluCI	AATT	2 cut(s)	637, 876
MluNI	TGGCCA	2 cut(s)	16, 125
MlyI	GAGTC	3 cut(s)	203, 641, 827
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	2 cut(s)	56, 185
Mox20I	TGGCCA	2 cut(s)	16, 125
Mph1103I	ATGCAT	1 cut(s)	400
MroNI	GCCGGC	1 cut(s)	829
MscI	TGGCCA	2 cut(s)	16, 125
MseI	TTAA	4 cut(s)	138, 179, 429, 735
MslI	CAYNNNNRTG	2 cut(s)	355, 471
Msp20I	TGGCCA	2 cut(s)	16, 125
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	64, 570
NaeI	GCCGGC	1 cut(s)	831
NdeII	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
NgoMIV	GCCGGC	1 cut(s)	829
NlaIII	CATG	8 cut(s)	71, 194, 360, 398, 402, 564, 646, 749
NlaIV	GGNNCC	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	564
PagI	TCATGA	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	2 cut(s)	45, 249
PdiI	GCCGGC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	79, 187, 260
PkrI	GCNGC	3 cut(s)	57, 758, 839
PleI	GAGTC	3 cut(s)	202, 640, 826
PpsI	GAGTC	3 cut(s)	202, 640, 826
Psp1406I	AACGTT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	4 cut(s)	10, 223, 235, 410
RsaNI	GTAC	4 cut(s)	9, 222, 234, 409
RseI	CAYNNNNRTG	2 cut(s)	355, 471
SapI	GCTCTTC	2 cut(s)	45, 249
SaqAI	TTAA	4 cut(s)	138, 179, 429, 735
SatI	GCNGC	3 cut(s)	56, 757, 838
Sau3AI	GATC	7 cut(s)	144, 291, 423, 520, 651, 729, 799
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	3 cut(s)	203, 641, 827
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	2 cut(s)	268, 798
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	355, 471
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	637, 876
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	443
TaiI	ACGT	2 cut(s)	311, 609
TaqI	TCGA	2 cut(s)	720, 816
TasI	AATT	2 cut(s)	637, 876
TatI	WGTACW	3 cut(s)	8, 221, 233
TfiI	GAWTC	3 cut(s)	79, 187, 260
Tru1I	TTAA	4 cut(s)	138, 179, 429, 735
Tru9I	TTAA	4 cut(s)	138, 179, 429, 735
TseI	GCWGC	3 cut(s)	55, 756, 837
TspDTI	ATGAA	4 cut(s)	84, 370, 489, 753
TspGWI	ACGGA	4 cut(s)	40, 329, 426, 513
XapI	RAATTY	1 cut(s)	876
XceI	RCATGY	1 cut(s)	564
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.