Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

41423464 .. 41424662

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGTGTAGTAGTTGGCCAGTTGAAAGCGTGTGTTTGTCGAATAGGCAGAGGGTACTGAAGGAAGAGCTGGTTCTAGGGCATCAACTTGCGAATCAACTTGGCAGGGTTGTTTCTAATGGGGATTTTAGATCGGCTGAAGGTCTTGTTATGAAGATTCTGAGCTCGTTCAGTAATAGCCTTTCCATCTTAAATGGAAATCATGAGTCTGAGGAGGAGGAGGAGCTTAATATTTCTCCTATTCGAGCCAATAATATTACTATTGCTCCTTCTCCTTCTATTCTAGAATCGTCATCTTGGGATGCTCATAATGCTGTTGGGAGTGCTGCGTCCATGGATCTCAGAGGTTCTTTCAAGAGAAGAAAGAAGATGACTTCACACGCATGGTCCAGAGATAGTCCAGATTTCAATGACGACGGTCATGCATGGAGAAAGTACGGACAGAAACAGATCCAGAATGCTATCCACCCAAGGAGCTACTTTAGGTGCAGTCATAAGTACGATCAAGGCTGCGCAGCAACCAAGCAGGTGCAAAAACTCAACGATTATCCACAGCTGTTTCGGACTACATATTATGGAAATCACACATGTACTAAAAGCTTCCTCAAAGCTCCTGATTTTTTCTTGGATACTACAAATGCTACTCCTGCAGGAGTGTCTAATTCCAAGTTTATGATCATATATAACTCAAACAACAGCCTCACAAAAATTAAACAAGAACAGCCTTTGTTCTCATCAACCAAGAACGAGCTCATTAAGTCTAACCATACGACTGGCAACCAGTTAGCATCTAATGATTATCTTGTGTCATCTGGTACGGTGGTGTTCGGGCACTCTGAACCCATCAGCGGGATGCCATCACAGATTGAGCTTGATCATGAGGGTATGATTGATCTTGGGGCAGAGATGCGACGCTTATTATTTGATGAAGAAATTTTGCCGTATGGACTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

319

Amino Acids

35.66

Weight (kDa)

6.42

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	138 - 197	2.3e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc16I	TGCGCA	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	517
AciI	CCGC	1 cut(s)	849
AclWI	GGATC	2 cut(s)	345, 445
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	2 cut(s)	80, 159
AfaI	GTAC	5 cut(s)	57, 437, 500, 592, 817
AfiI	CCNNNNNNNGG	2 cut(s)	848, 849
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	26, 355, 409
AluBI	AGCT	9 cut(s)	70, 165, 226, 477, 556, 600, 611, 751, 871
AluI	AGCT	9 cut(s)	70, 165, 226, 477, 556, 600, 611, 751, 871
Alw21I	GWGCWC	2 cut(s)	167, 753
AlwI	GGATC	2 cut(s)	345, 445
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	3 cut(s)	326, 510, 515
ApoI	RAATTY	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	834
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BalI	TGGCCA	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	167, 753
Bbv12I	GWGCWC	2 cut(s)	167, 753
BbvI	GCAGC	3 cut(s)	313, 497, 527
BccI	CCATC	3 cut(s)	194, 851, 865
BceAI	ACGGC	1 cut(s)	925
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	2 cut(s)	675, 874
BfaI	CTAG	2 cut(s)	77, 284
BfmI	CTRYAG	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	517
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	327, 511, 516
BlsI	GCNGC	3 cut(s)	328, 512, 517
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmsI	GCATC	5 cut(s)	91, 292, 797, 843, 897
BoxI	GACNNNNGTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	333, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 849
Bse1I	ACTGG	3 cut(s)	20, 778, 781
BseDI	CCNNGG	2 cut(s)	333, 470
BseGI	GGATG	2 cut(s)	307, 858
BseLI	CCNNNNNNNGG	2 cut(s)	848, 849
BseMII	CTCAG	3 cut(s)	152, 201, 355
BseNI	ACTGG	3 cut(s)	20, 778, 781
BseRI	GAGGAG	4 cut(s)	227, 230, 233, 236
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	3 cut(s)	313, 497, 527
BsgI	GTGCAG	1 cut(s)	508
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	167, 753
BslI	CCNNNNNNNGG	2 cut(s)	848, 849
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	3 cut(s)	167, 753, 834
Bsp143I	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	849
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	3 cut(s)	153, 202, 354
BspHI	TCATGA	2 cut(s)	202, 877
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	2 cut(s)	345, 445
BspQI	GCTCTTC	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	20, 778, 781
BssECI	CCNNGG	2 cut(s)	333, 470
BssMI	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
BssT1I	CCWWGG	2 cut(s)	333, 470
Bst4CI	ACNGT	2 cut(s)	419, 820
Bst6I	CTCTTC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	161, 210, 341
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	307, 858
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	7 cut(s)	134, 340, 453, 505, 678, 877, 895
BstMBI	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 647
BstNSI	RCATGY	1 cut(s)	591
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	834
BstV1I	GCAGC	3 cut(s)	313, 497, 527
BstX2I	RGATCY	2 cut(s)	337, 450
BstXI	CCANNNNNNTGG	1 cut(s)	773
BstYI	RGATCY	2 cut(s)	337, 450
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	307, 858
BveI	ACCTGC	1 cut(s)	517
CciI	TCATGA	2 cut(s)	202, 877
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	2 cut(s)	318, 921
Csp6I	GTAC	5 cut(s)	56, 436, 499, 591, 816
CviAII	CATG	7 cut(s)	203, 334, 384, 422, 426, 588, 878
CviQI	GTAC	5 cut(s)	56, 436, 499, 591, 816
DdeI	CTNAG	3 cut(s)	161, 210, 341
DpnI	GATC	7 cut(s)	133, 339, 452, 504, 677, 876, 894
DpnII	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	2 cut(s)	165, 751
Eco130I	CCWWGG	2 cut(s)	333, 470
Eco24I	GRGCYC	2 cut(s)	167, 753
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	2 cut(s)	165, 751
Eco57I	CTGAAG	2 cut(s)	80, 159
EcoICRI	GAGCTC	2 cut(s)	165, 751
EcoT14I	CCWWGG	2 cut(s)	333, 470
EcoT22I	ATGCAT	1 cut(s)	427
EcoT38I	GRGCYC	2 cut(s)	167, 753
ErhI	CCWWGG	2 cut(s)	333, 470
FaeI	CATG	7 cut(s)	206, 337, 387, 425, 429, 591, 881
FatI	CATG	7 cut(s)	202, 333, 383, 421, 425, 587, 877
FauI	CCCGC	1 cut(s)	842
FbaI	TGATCA	2 cut(s)	675, 874
Fnu4HI	GCNGC	3 cut(s)	327, 511, 516
FokI	GGATG	2 cut(s)	314, 865
FriOI	GRGCYC	2 cut(s)	167, 753
Fsp4HI	GCNGC	3 cut(s)	327, 511, 516
FspBI	CTAG	2 cut(s)	77, 284
FspI	TGCGCA	1 cut(s)	514
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	3 cut(s)	327, 511, 516
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	2 cut(s)	318, 921
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	7 cut(s)	206, 337, 387, 425, 429, 591, 881
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	94, 157, 206, 287
Hpy188I	TCNGA	5 cut(s)	162, 211, 344, 564, 838
Hpy188III	TCNNGA	8 cut(s)	203, 284, 355, 390, 401, 454, 614, 878
Hpy99I	CGWCG	2 cut(s)	419, 915
HpyAV	CCTTC	4 cut(s)	55, 134, 279, 285
HpyCH4III	ACNGT	2 cut(s)	419, 820
HpyCH4V	TGCA	4 cut(s)	425, 489, 532, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 647
HpyF3I	CTNAG	3 cut(s)	161, 210, 341
Hsp92II	CATG	7 cut(s)	206, 337, 387, 425, 429, 591, 881
HspAI	GCGC	1 cut(s)	513
Ksp22I	TGATCA	2 cut(s)	675, 874
Kzo9I	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	4 cut(s)	223, 271, 474, 616
Lsp1109I	GCAGC	3 cut(s)	313, 497, 527
LweI	GCATC	5 cut(s)	91, 292, 797, 843, 897
MaeI	CTAG	2 cut(s)	77, 284
MalI	GATC	7 cut(s)	133, 339, 452, 504, 677, 876, 894
MboI	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
MboII	GAAGA	5 cut(s)	77, 166, 372, 379, 941
MflI	RGATCY	2 cut(s)	337, 450
MhlI	GDGCHC	3 cut(s)	167, 753, 834
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	3 cut(s)	661, 708, 933
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	9 cut(s)	45, 205, 208, 211, 214, 338, 614, 710, 874
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	4 cut(s)	191, 228, 711, 756
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	2 cut(s)	556, 849
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	311, 647
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
NlaIII	CATG	7 cut(s)	206, 337, 387, 425, 429, 591, 881
NsbI	TGCGCA	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	591
PagI	TCATGA	2 cut(s)	202, 877
PaqCI	CACCTGC	1 cut(s)	517
PciI	ACATGT	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	94, 157, 287
PkrI	GCNGC	3 cut(s)	328, 512, 517
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	587
PshAI	GACNNNNGTC	1 cut(s)	417
Psp124BI	GAGCTC	2 cut(s)	167, 753
PspPI	GGNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	337, 450
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	5 cut(s)	57, 437, 500, 592, 817
RsaNI	GTAC	5 cut(s)	56, 436, 499, 591, 816
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	167, 753
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	191, 228, 711, 756
SatI	GCNGC	3 cut(s)	327, 511, 516
Sau3AI	GATC	7 cut(s)	131, 337, 450, 502, 675, 874, 892
Sau96I	GGNCC	1 cut(s)	387
SbfI	CCTGCAGG	1 cut(s)	652
SchI	GAGTC	1 cut(s)	215
SdaI	CCTGCAGG	1 cut(s)	652
SduI	GDGCHC	3 cut(s)	167, 753, 834
SfaNI	GCATC	5 cut(s)	91, 292, 797, 843, 897
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse8387I	CCTGCAGG	1 cut(s)	652
Sse9I	AATT	3 cut(s)	661, 708, 933
SsiI	CCGC	1 cut(s)	849
SspI	AATATT	2 cut(s)	232, 256
SspMI	CTAG	2 cut(s)	77, 284
SstI	GAGCTC	2 cut(s)	167, 753
StyI	CCWWGG	2 cut(s)	333, 470
TaaI	ACNGT	2 cut(s)	419, 820
TaqI	TCGA	2 cut(s)	41, 244
TasI	AATT	3 cut(s)	661, 708, 933
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	94, 157, 287
Tru1I	TTAA	4 cut(s)	191, 228, 711, 756
Tru9I	TTAA	4 cut(s)	191, 228, 711, 756
TseI	GCWGC	3 cut(s)	326, 510, 515
TspDTI	ATGAA	2 cut(s)	167, 942
TspGWI	ACGGA	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	933
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	591
XspI	CTAG	2 cut(s)	77, 284
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.