Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

20131764 .. 20132237

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTATATGTATGCAGGAACTACTTTAGATGCACTCACAAATACGATCGATCGTGCAAAGCAACCAAGCAAGTGCAACAAGTTGAAGATCATCCACCAGTGTTTCGAACCACATATTATGGCACCCACACGTGCAGAGACTACCCCAAAGCTTCTGAACTGGTCTTGGATTGCACTAGTCCCAGAGATTCCTCAAAATTCATTAGTTTTGACAACGCCAACTGTTTGGAAAACAAACAAGAGCACCCATTTTTCACATCCTTCGCTTCATCATCAGTTAAAGAAGAACTGATCGTCAAGGCAACAAGTGATCATACGGTGACAAGCCACAACAACCATTCGTCACCGAGTGATTATCTACTGTCGCATGATGATCTGATGGCATTCGATTCCTTTTGGCCCATGAGCGAGTTTTCATCAAGCATTGATCAGTATGATCGTGATGTGTTTTTGAAGATGATTGCCGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

158

Amino Acids

18.21

Weight (kDa)

5.69

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	6 - 45	1.5e-10	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	197
AcvI	CACGTG	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	86, 454
AhlI	ACTAGT	1 cut(s)	176
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	331, 336
AsuII	TTCGAA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	2 cut(s)	310, 427
BcoDI	GTCTC	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	98, 165
BseCI	ATCGAT	1 cut(s)	49
BseGI	GGATG	2 cut(s)	91, 257
BseNI	ACTGG	2 cut(s)	98, 165
BsgI	GTGCAG	1 cut(s)	154
Bsh1285I	CGRYCG	2 cut(s)	49, 53
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	49
BsiEI	CGRYCG	2 cut(s)	49, 53
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
BspANI	GGCC	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	98, 165
BssMI	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
Bst4CI	ACNGT	3 cut(s)	224, 319, 363
BstBAI	YACGTR	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	91, 257
BstKTI	GATC	8 cut(s)	49, 53, 91, 294, 313, 376, 430, 439
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
BstMCI	CGRYCG	2 cut(s)	49, 53
BstXI	CCANNNNNNTGG	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	91, 257
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	399
ClaI	ATCGAT	1 cut(s)	49
CviAII	CATG	2 cut(s)	368, 403
CviJI	RGCY	3 cut(s)	152, 327, 400
CviKI_1	RGCY	3 cut(s)	152, 327, 400
DpnI	GATC	8 cut(s)	48, 52, 90, 293, 312, 375, 429, 438
DpnII	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
DraIII	CACNNNGTG	1 cut(s)	350
Eco72I	CACGTG	1 cut(s)	132
FaeI	CATG	2 cut(s)	371, 406
FaiI	YATR	9 cut(s)	7, 9, 13, 115, 120, 315, 369, 404, 435
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	367, 402
FbaI	TGATCA	2 cut(s)	310, 427
FokI	GGATG	2 cut(s)	78, 244
FspBI	CTAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	371, 406
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	3 cut(s)	188, 389, 467
HphI	GGTGA	2 cut(s)	331, 336
Hpy188I	TCNGA	2 cut(s)	157, 378
Hpy188III	TCNNGA	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	224, 319, 363
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	6 cut(s)	15, 33, 57, 76, 135, 174
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	371, 406
Ksp22I	TGATCA	2 cut(s)	310, 427
Kzo9I	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
LpnPI	CCDG	3 cut(s)	111, 146, 196
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	319, 342
MalI	GATC	8 cut(s)	48, 52, 90, 293, 312, 375, 429, 438
MboI	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
MboII	GAAGA	3 cut(s)	98, 296, 466
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	1 cut(s)	202
MseI	TTAA	2 cut(s)	279, 472
Mva1269I	GAATGC	1 cut(s)	383
NdeII	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
NlaIII	CATG	2 cut(s)	371, 406
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	319, 342
NspV	TTCGAA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	188, 389
Ple19I	CGATCG	2 cut(s)	49, 53
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	399
PvuI	CGATCG	2 cut(s)	49, 53
SaqAI	TTAA	2 cut(s)	279, 472
Sau3AI	GATC	8 cut(s)	46, 50, 88, 291, 310, 373, 427, 436
Sau96I	GGNCC	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	2 cut(s)	134, 154
SfaNI	GCATC	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	106
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	1 cut(s)	197
SspMI	CTAG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	224, 319, 363
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	49, 106, 387
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	188, 389
Tru1I	TTAA	2 cut(s)	279, 472
Tru9I	TTAA	2 cut(s)	279, 472
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	319, 342
Tsp45I	GTSAC	2 cut(s)	319, 342
TspDTI	ATGAA	3 cut(s)	190, 258, 405
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.