AT5G33340

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
12594427 .. 12596003
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33340.1

Sequence Viewer

Length: 1314 bp
ATGGCCTCTCTATTCTCTTCAGTTCTCTTGTCTCTTTGTTTACTCTCTTCACTTTTTCTCTCAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCTCCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCTACGAAACGCGATCCACCGATCCGTTAACCGTGTTTTCCATTTCACTGAAAAGGATAACACACCACAACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATCCATTGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGGACGCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAACGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAATCAAGCCTCTTGTTCCACAAATGACAACACTTGTTCTTACTCATTGTCTTACGGGGATAACTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCGCCCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTAACAAGAAAGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAACTTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGGATCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCTCAACTCCTCTGATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCCATTAGCGTGGGAAGCAAGCAAATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGGAAACATCATCATCGATTCAGGCACAACTTTAACGTTATTACCGACTGAATTTTACTCCGAGCTCGAGGATGCGGTTGCATCCTCTATCGATGCTGAGAAGAAGCAAGATCCACAAAGCGGTTTGAGTCTATGTTACAGTGCAACCGGAGATCTAAAAGTTCCAGTCATTACTATGCATTTTGATGGAGCCGATGTGAAGCTTGACTCCTCCAATGCCTTTGTACAAGTCTCGGAGGATTTGGTTTGCTTTGCCTTCCGCGGAAGCCCGAGTTTCTCCATATACGGTAATGTGGCGCAGATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTGTGCAAAGATGTAG

Protein Analysis

437

Amino Acids

46.82

Weight (kDa)

5.02

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 89 - 429 1.9e-19 Eukaryotic aspartyl protease
TAXi_N PF14543 90 - 263 7.1e-57 Xylanase inhibitor N-terminal
TAXi_C PF14541 288 - 430 1.7e-30 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 355
AccI GTMKAC 1 cut(s) 166
AccII CGCG 3 cut(s) 98, 176, 1200
AciI CCGC 8 cut(s) 96, 98, 261, 583, 1013, 1059, 1198, 1200
AclI AACGTT 2 cut(s) 638, 974
AclWI GGATC 7 cut(s) 108, 172, 180, 380, 771, 817, 1043
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 725, 989
AcyI GRCGYC 1 cut(s) 845
AfaI GTAC 2 cut(s) 451, 1164
AfiI CCNNNNNNNGG 3 cut(s) 86, 310, 1058
AflII CTTAAG 1 cut(s) 596
AluBI AGCT 3 cut(s) 595, 1003, 1141
AluI AGCT 3 cut(s) 595, 1003, 1141
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 5 cut(s) 36, 826, 848, 852, 1174
AlwI GGATC 7 cut(s) 108, 172, 180, 380, 771, 817, 1043
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 2 cut(s) 1004, 1207
AoxI GGCC 2 cut(s) 3, 312
ApeKI GCWGC 2 cut(s) 592, 933
ApoI RAATTY 2 cut(s) 725, 989
AspLEI GCGC 2 cut(s) 356, 1237
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 3 cut(s) 85, 241, 275
AvaI CYCGRG 2 cut(s) 1004, 1207
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 1005
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 2 cut(s) 604, 945
BccI CCATC 5 cut(s) 139, 323, 722, 806, 1118
BceAI ACGGC 2 cut(s) 115, 533
BciVI GTATCC 3 cut(s) 292, 547, 1250
BcoDI GTCTC 5 cut(s) 36, 826, 848, 852, 1174
BfaI CTAG 3 cut(s) 86, 458, 671
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 3 cut(s) 292, 547, 1250
BglII AGATCT 1 cut(s) 1090
BisI GCNGC 2 cut(s) 593, 934
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 594, 935
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 2 cut(s) 1004, 1207
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 4 cut(s) 571, 744, 790, 1129
BmsI GCATC 3 cut(s) 1000, 1021, 1028
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 556
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 3 cut(s) 363, 424, 834
Bsa29I ATCGAT 2 cut(s) 954, 1029
BsaHI GRCGYC 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 96, 549, 1198
BsaWI WCCGGW 3 cut(s) 326, 682, 1085
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 310, 1058
Bse1I ACTGG 1 cut(s) 1103
BseCI ATCGAT 2 cut(s) 954, 1029
BseDI CCNNGG 3 cut(s) 96, 549, 1198
BseGI GGATG 2 cut(s) 1015, 1019
BseLI CCNNNNNNNGG 3 cut(s) 86, 310, 1058
BseMII CTCAG 3 cut(s) 927, 933, 1026
BseNI ACTGG 1 cut(s) 1103
BseRI GAGGAG 4 cut(s) 329, 427, 819, 1138
BseXI GCAGC 2 cut(s) 604, 945
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 3 cut(s) 98, 176, 1200
BshFI GGCC 2 cut(s) 5, 314
BshVI ATCGAT 2 cut(s) 954, 1029
BsiHKAI GWGCWC 1 cut(s) 1005
BsiHKCI CYCGRG 2 cut(s) 1004, 1207
BsiSI CCGG 3 cut(s) 327, 683, 1086
BslI CCNNNNNNNGG 3 cut(s) 86, 310, 1058
BsmAI GTCTC 5 cut(s) 36, 826, 848, 852, 1174
BsmBI CGTCTC 1 cut(s) 852
BsnI GGCC 2 cut(s) 5, 314
Bso31I GGTCTC 1 cut(s) 848
BsoBI CYCGRG 2 cut(s) 1004, 1207
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp1407I TGTACA 1 cut(s) 1162
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 8 cut(s) 96, 98, 261, 583, 1013, 1059, 1198, 1200
BspANI GGCC 2 cut(s) 5, 314
BspCNI CTCAG 3 cut(s) 926, 932, 1027
BspDI ATCGAT 2 cut(s) 954, 1029
BspFNI CGCG 3 cut(s) 98, 176, 1200
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 571, 744, 790, 1129
BspPI GGATC 7 cut(s) 108, 172, 180, 380, 771, 817, 1043
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 848
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 1 cut(s) 1103
BssECI CCNNGG 3 cut(s) 96, 549, 1198
BssNI GRCGYC 1 cut(s) 845
Bst4CI ACNGT 7 cut(s) 113, 197, 722, 1079, 1226, 1267, 1279
Bst6I CTCTTC 3 cut(s) 22, 52, 160
BstACI GRCGYC 1 cut(s) 845
BstAFI CTTAAG 1 cut(s) 596
BstAUI TGTACA 1 cut(s) 1162
BstC8I GCNNGC 1 cut(s) 899
BstDEI CTNAG 4 cut(s) 75, 913, 919, 1035
BstDSI CCRYGG 3 cut(s) 96, 549, 1198
BstF5I GGATG 2 cut(s) 1015, 1019
BstFNI CGCG 3 cut(s) 98, 176, 1200
BstHHI GCGC 2 cut(s) 356, 1237
BstMAI GTCTC 5 cut(s) 36, 826, 848, 852, 1174
BstMWI GCNNNNNNNGC 4 cut(s) 360, 582, 697, 894
BstUI CGCG 3 cut(s) 98, 176, 1200
BstV1I GCAGC 2 cut(s) 604, 945
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 3 cut(s) 100, 1048, 1090
BstXI CCANNNNNNTGG 1 cut(s) 889
BstYI RGATCY 3 cut(s) 100, 1048, 1090
Bsu15I ATCGAT 2 cut(s) 954, 1029
BsuI GTATCC 3 cut(s) 292, 547, 1250
BsuRI GGCC 2 cut(s) 5, 314
BsuTUI ATCGAT 2 cut(s) 954, 1029
BtgI CCRYGG 3 cut(s) 96, 549, 1198
BtgZI GCGATG 3 cut(s) 301, 378, 529
BtsCI GGATG 2 cut(s) 1015, 1019
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 4 cut(s) 210, 356, 1084, 1263
Cac8I GCNNGC 1 cut(s) 899
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 273
CfoI GCGC 2 cut(s) 356, 1237
Cfr13I GGNCC 1 cut(s) 680
Cfr42I CCGCGG 2 cut(s) 99, 1201
ClaI ATCGAT 2 cut(s) 954, 1029
CseI GACGC 3 cut(s) 152, 355, 834
Csp6I GTAC 2 cut(s) 450, 1163
CviAII CATG 3 cut(s) 274, 310, 360
CviQI GTAC 2 cut(s) 450, 1163
DdeI CTNAG 4 cut(s) 75, 913, 919, 1035
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 22, 52, 160
EarI CTCTTC 3 cut(s) 22, 52, 160
Ecl136II GAGCTC 1 cut(s) 1003
Eco24I GRGCYC 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 1003
Eco88I CYCGRG 2 cut(s) 1004, 1207
EcoICRI GAGCTC 1 cut(s) 1003
EcoT22I ATGCAT 1 cut(s) 1119
EcoT38I GRGCYC 1 cut(s) 1005
Esp3I CGTCTC 1 cut(s) 852
FaeI CATG 3 cut(s) 277, 313, 363
FatI CATG 3 cut(s) 273, 309, 359
FauI CCCGC 1 cut(s) 590
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 593, 934
FokI GGATG 2 cut(s) 1006, 1022
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 2 cut(s) 593, 934
FspAI RTGCGCAY 1 cut(s) 355
FspBI CTAG 3 cut(s) 86, 458, 671
FspI TGCGCA 1 cut(s) 355
GlaI GCGC 2 cut(s) 355, 1236
GluI GCNGC 2 cut(s) 593, 934
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 556
HaeIII GGCC 2 cut(s) 5, 314
HapII CCGG 3 cut(s) 327, 683, 1086
HgaI GACGC 3 cut(s) 152, 355, 834
HhaI GCGC 2 cut(s) 356, 1237
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 3 cut(s) 277, 313, 363
Hin6I GCGC 2 cut(s) 354, 1235
HinP1I GCGC 2 cut(s) 354, 1235
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 7 cut(s) 116, 660, 710, 923, 956, 1066, 1145
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 3 cut(s) 327, 683, 1086
HphI GGTGA 3 cut(s) 85, 241, 275
Hpy166II GTNNAC 3 cut(s) 41, 167, 193
Hpy188I TCNGA 7 cut(s) 668, 788, 834, 922, 928, 1000, 1174
Hpy188III TCNNGA 7 cut(s) 274, 304, 343, 657, 807, 813, 851
Hpy8I GTNNAC 3 cut(s) 41, 167, 193
Hpy99I CGWCG 2 cut(s) 668, 722
HpyAV CCTTC 2 cut(s) 868, 1204
HpyCH4III ACNGT 7 cut(s) 113, 197, 722, 1079, 1226, 1267, 1279
HpyCH4IV ACGT 5 cut(s) 279, 407, 426, 638, 974
HpyCH4V TGCA 6 cut(s) 68, 592, 1019, 1082, 1117, 1304
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 582, 697, 894
HpyF3I CTNAG 4 cut(s) 75, 913, 919, 1035
HpySE526I ACGT 5 cut(s) 279, 407, 426, 638, 974
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 3 cut(s) 277, 313, 363
HspAI GCGC 2 cut(s) 354, 1235
KspAI GTTAAC 1 cut(s) 193
KspI CCGCGG 2 cut(s) 99, 1201
LmnI GCTCC 3 cut(s) 440, 575, 1127
Lsp1109I GCAGC 2 cut(s) 604, 945
LweI GCATC 3 cut(s) 1000, 1021, 1028
MaeI CTAG 3 cut(s) 86, 458, 671
MaeII ACGT 5 cut(s) 279, 407, 426, 638, 974
MaeIII GTNAC 4 cut(s) 371, 539, 620, 1073
MboII GAAGA 5 cut(s) 9, 39, 147, 402, 1051
MflI RGATCY 3 cut(s) 100, 1048, 1090
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 2 cut(s) 725, 989
MluNI TGGCCA 1 cut(s) 314
MlyI GAGTC 3 cut(s) 704, 1075, 1139
MmeI TCCRAC 2 cut(s) 646, 1234
Mox20I TGGCCA 1 cut(s) 314
Mph1103I ATGCAT 1 cut(s) 1119
MscI TGGCCA 1 cut(s) 314
MseI TTAA 6 cut(s) 192, 560, 597, 642, 971, 1287
MslI CAYNNNNRTG 4 cut(s) 548, 887, 1112, 1122
Msp20I TGGCCA 1 cut(s) 314
MspA1I CMGCKG 2 cut(s) 98, 1200
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 3 cut(s) 327, 683, 1086
MvnI CGCG 3 cut(s) 98, 176, 1200
MwoI GCNNNNNNNGC 4 cut(s) 360, 582, 697, 894
NlaIII CATG 3 cut(s) 277, 313, 363
NlaIV GGNNCC 4 cut(s) 571, 744, 790, 1129
NmeAIII GCCGAG 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 620
NsbI TGCGCA 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 1119
PaeR7I CTCGAG 1 cut(s) 1004
PagI TCATGA 1 cut(s) 273
PcsI WCGNNNNNNNCGW 2 cut(s) 573, 980
PfeI GAWTC 4 cut(s) 116, 660, 923, 956
PkrI GCNGC 2 cut(s) 594, 935
PleI GAGTC 3 cut(s) 704, 1074, 1139
PpsI GAGTC 3 cut(s) 704, 1074, 1139
Psp124BI GAGCTC 1 cut(s) 1005
Psp1406I AACGTT 2 cut(s) 638, 974
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 571, 744, 790, 1129
PspPI GGNCC 1 cut(s) 680
PspXI VCTCGAGB 1 cut(s) 1004
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 3 cut(s) 100, 1048, 1090
RsaI GTAC 2 cut(s) 451, 1164
RsaNI GTAC 2 cut(s) 450, 1163
RseI CAYNNNNRTG 4 cut(s) 548, 887, 1112, 1122
SacI GAGCTC 1 cut(s) 1005
SacII CCGCGG 2 cut(s) 99, 1201
SaqAI TTAA 6 cut(s) 192, 560, 597, 642, 971, 1287
SatI GCNGC 2 cut(s) 593, 934
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 3 cut(s) 704, 1075, 1139
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 3 cut(s) 1000, 1021, 1028
Sfr274I CTCGAG 1 cut(s) 1004
Sfr303I CCGCGG 2 cut(s) 99, 1201
SgrBI CCGCGG 2 cut(s) 99, 1201
SinI GGWCC 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 1004
SmiMI CAYNNNNRTG 4 cut(s) 548, 887, 1112, 1122
SmlI CTYRAG 5 cut(s) 378, 439, 596, 849, 1004
SmoI CTYRAG 5 cut(s) 378, 439, 596, 849, 1004
Sse9I AATT 2 cut(s) 725, 989
SsiI CCGC 8 cut(s) 96, 98, 261, 583, 1013, 1059, 1198, 1200
SspI AATATT 1 cut(s) 604
SspMI CTAG 3 cut(s) 86, 458, 671
SstI GAGCTC 1 cut(s) 1005
TaaI ACNGT 7 cut(s) 113, 197, 722, 1079, 1226, 1267, 1279
TaiI ACGT 5 cut(s) 282, 410, 429, 641, 977
TaqI TCGA 4 cut(s) 717, 954, 1005, 1029
TasI AATT 2 cut(s) 725, 989
TatI WGTACW 2 cut(s) 449, 1162
TfiI GAWTC 4 cut(s) 116, 660, 923, 956
Tru1I TTAA 6 cut(s) 192, 560, 597, 642, 971, 1287
Tru9I TTAA 6 cut(s) 192, 560, 597, 642, 971, 1287
TscAI CASTG 4 cut(s) 217, 356, 1084, 1270
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 592, 933
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 290, 1256
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 4 cut(s) 217, 356, 1084, 1270
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 2 cut(s) 725, 989
XhoI CTCGAG 1 cut(s) 1004
XmiI GTMKAC 1 cut(s) 166
XspI CTAG 3 cut(s) 86, 458, 671
Zsp2I ATGCAT 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.