Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

30850652 .. 30893989

Gene Structure 43338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGCTTCTGACGAGTCTTCGCATGTGGAAGGTGACGGTGCCAGTCCTTTAGTGGAGATTAGCACCATGGCGGCAATTCTCTTTGTTGTGATTGCTTCAAGCTTCTTGGTTATGTTTTACAAACTTGTGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGACTAGCCAGCCAAAGAAAGATGAATTCTCTCTCGTCTCAACAGAAGATCCCAGAGACTTTATTCATCTCTTCCACAGATATAGGGCTTTTTCTAGAACCTCATGTCTCCTTTTGGTGACAAGAGTTGTGGCGCAGCCAGCACCATGGGCGTCGTTCTCAAAGCCTATGGCTTTCTCGTTACCTGCAGGCTGCATCAAAATCGATGGAAAGTTTTCATATTGCTTGATCCCTTTTGCCTCGGAAGGTGACCAAACAAGCAAGTTGAACTTTGGTGATAATGCTGTGGTTTCCGGATCTGGCGTTCTTTCCACTCCCATTGTCAAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACAAAAATTCCCTTCTCATCCTCAATTTCAGGCTCTGGTGAGGGCAACATTATAATCGACTCCGGCACCACATTAACCATACTAGAGCAGTCCTTCTACTCGAAGCTAGAAGAAGCAGTTGGCAAGGTTGTCGGCGGGGTGCGCGTGATCGATCCTCTGATTGGAATACCTCTTTGCTTTAAGGTGAGTCTATCCCAGGATTTGAAGGTCCCAAATATTACTGTACATTTCACTGGCGCTGATGTGAAGTTGGAGCAGCAGAACACTTTTGTTAGGGTGAGCGATGATACTGTGTGCTTTGCCTTTGCTCCGGCGCAGAGTCTTTCGATCTATGGGAACCTGGCCCAAGCGGGTTTCTTGGTGGGATATGACCTTAAGGGCAAGGCTGTGTCCTTCAAGCCTAGTGACTGCACCAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

329

Amino Acids

35.68

Weight (kDa)

5.31

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	142 - 321	8.8e-10	Eukaryotic aspartyl protease
TAXi_C	PF14541	178 - 322	4.7e-26	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	2 cut(s)	41, 632
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	711
AccIII	TCCGGA	1 cut(s)	476
AciI	CCGC	3 cut(s)	74, 702, 917
AclWI	GGATC	4 cut(s)	227, 406, 487, 713
AcsI	RAATTY	2 cut(s)	209, 573
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	792
AfiI	CCNNNNNNNGG	1 cut(s)	728
AflII	CTTAAG	1 cut(s)	941
AgsI	TTSAA	4 cut(s)	102, 451, 772, 964
AjnI	CCWGG	2 cut(s)	762, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	2 cut(s)	105, 673
AluI	AGCT	2 cut(s)	105, 673
Alw26I	GTCTC	4 cut(s)	179, 226, 234, 296
AlwI	GGATC	4 cut(s)	227, 406, 487, 713
AlwNI	CAGNNNCTG	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	1 cut(s)	909
ApeKI	GCWGC	3 cut(s)	319, 375, 823
ApoI	RAATTY	2 cut(s)	209, 573
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	4 cut(s)	319, 711, 806, 883
AspS9I	GGNCC	2 cut(s)	775, 910
AsuHPI	GGTGA	7 cut(s)	47, 313, 443, 470, 617, 763, 856
AvaII	GGWCC	1 cut(s)	775
BanI	GGYRCC	2 cut(s)	41, 632
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	331, 362, 835
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	4 cut(s)	367, 401, 679, 713
BciT130I	CCWGG	2 cut(s)	764, 908
BcoDI	GTCTC	4 cut(s)	179, 226, 234, 296
BfaI	CTAG	5 cut(s)	189, 279, 650, 674, 969
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	807
BfrI	CTTAAG	1 cut(s)	941
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	4 cut(s)	75, 320, 376, 824
BlsI	GCNGC	4 cut(s)	76, 321, 377, 825
Bme1390I	CCNGG	2 cut(s)	764, 908
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	775, 910
BmiI	GGNNCC	4 cut(s)	43, 634, 777, 905
BmrFI	CCNGG	2 cut(s)	764, 908
BmsI	GCATC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	12
Bsa29I	ATCGAT	2 cut(s)	387, 717
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	69, 329, 423, 762
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	2 cut(s)	45, 805
BseAI	TCCGGA	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	764, 908
BseCI	ATCGAT	2 cut(s)	387, 717
BseDI	CCNNGG	4 cut(s)	69, 329, 423, 762
BseGI	GGATG	2 cut(s)	10, 584
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseNI	ACTGG	2 cut(s)	45, 805
BseXI	GCAGC	3 cut(s)	331, 362, 835
BsgI	GTGCAG	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	911
BshNI	GGYRCC	2 cut(s)	41, 632
BshVI	ATCGAT	2 cut(s)	387, 717
BsiSI	CCGG	3 cut(s)	477, 630, 878
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	4 cut(s)	179, 226, 234, 296
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	1 cut(s)	911
Bsp13I	TCCGGA	1 cut(s)	476
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
Bsp19I	CCATGG	2 cut(s)	69, 329
BspACI	CCGC	3 cut(s)	74, 702, 917
BspANI	GGCC	1 cut(s)	911
BspDI	ATCGAT	2 cut(s)	387, 717
BspEI	TCCGGA	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	4 cut(s)	43, 634, 777, 905
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	4 cut(s)	227, 406, 487, 713
BspT107I	GGYRCC	2 cut(s)	41, 632
BspTI	CTTAAG	1 cut(s)	941
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	45, 805
BssECI	CCNNGG	4 cut(s)	69, 329, 423, 762
BssMI	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	2 cut(s)	69, 329
Bst2UI	CCWGG	2 cut(s)	764, 908
Bst4CI	ACNGT	3 cut(s)	41, 790, 859
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	194, 324, 373
BstDSI	CCRYGG	2 cut(s)	69, 329
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	10, 584
BstFNI	CGCG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	807
BstHHI	GCGC	4 cut(s)	319, 711, 806, 883
BstKTI	GATC	7 cut(s)	235, 414, 482, 514, 717, 721, 897
BstMAI	GTCTC	4 cut(s)	179, 226, 234, 296
BstMBI	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 332, 708
BstNI	CCWGG	2 cut(s)	764, 908
BstNSI	RCATGY	1 cut(s)	29
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	762, 906
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	3 cut(s)	331, 362, 835
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	232, 479
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	2 cut(s)	232, 479
Bsu15I	ATCGAT	2 cut(s)	387, 717
BsuRI	GGCC	1 cut(s)	911
BsuTUI	ATCGAT	2 cut(s)	387, 717
BtgI	CCRYGG	2 cut(s)	69, 329
BtgZI	GCGATG	1 cut(s)	864
BtsCI	GGATG	2 cut(s)	10, 584
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	194, 324, 373
CaiI	CAGNNNCTG	1 cut(s)	602
CfoI	GCGC	4 cut(s)	319, 711, 806, 883
Cfr13I	GGNCC	2 cut(s)	775, 910
ClaI	ATCGAT	2 cut(s)	387, 717
CseI	GACGC	2 cut(s)	324, 547
Csp6I	GTAC	1 cut(s)	791
CspCI	CAANNNNNGTGG	4 cut(s)	294, 329, 484, 519
CviAII	CATG	4 cut(s)	26, 70, 288, 330
CviQI	GTAC	1 cut(s)	791
DpnI	GATC	7 cut(s)	234, 413, 481, 513, 716, 720, 896
DpnII	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	69, 329
Eco47I	GGWCC	1 cut(s)	775
Eco91I	GGTNACC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	775
EcoO65I	GGTNACC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	762, 906
EcoT14I	CCWWGG	2 cut(s)	69, 329
ErhI	CCWWGG	2 cut(s)	69, 329
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	4 cut(s)	29, 73, 291, 333
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	4 cut(s)	25, 69, 287, 329
FauI	CCCGC	2 cut(s)	695, 910
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	75, 320, 376, 824
FokI	GGATG	2 cut(s)	17, 571
Fsp4HI	GCNGC	4 cut(s)	75, 320, 376, 824
FspBI	CTAG	5 cut(s)	189, 279, 650, 674, 969
GlaI	GCGC	4 cut(s)	318, 710, 805, 882
GluI	GCNGC	4 cut(s)	75, 320, 376, 824
HaeII	RGCGCY	1 cut(s)	807
HaeIII	GGCC	1 cut(s)	911
HapII	CCGG	3 cut(s)	477, 630, 878
HgaI	GACGC	2 cut(s)	324, 547
HhaI	GCGC	4 cut(s)	319, 711, 806, 883
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	29, 73, 291, 333
Hin6I	GCGC	4 cut(s)	317, 709, 804, 881
HinP1I	GCGC	4 cut(s)	317, 709, 804, 881
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	5 cut(s)	17, 151, 626, 754, 886
HpaII	CCGG	3 cut(s)	477, 630, 878
HphI	GGTGA	7 cut(s)	47, 313, 443, 470, 617, 763, 856
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	3 cut(s)	13, 427, 726
Hpy188III	TCNNGA	4 cut(s)	148, 279, 477, 538
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	340, 563
HpyAV	CCTTC	8 cut(s)	26, 145, 422, 538, 589, 670, 766, 970
HpyCH4III	ACNGT	3 cut(s)	41, 790, 859
HpyCH4V	TGCA	4 cut(s)	171, 371, 378, 978
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 332, 708
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	29, 73, 291, 333
HspAI	GCGC	4 cut(s)	317, 709, 804, 881
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
LmnI	GCTCC	2 cut(s)	820, 880
Lsp1109I	GCAGC	3 cut(s)	331, 362, 835
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	5 cut(s)	189, 279, 650, 674, 969
MaeIII	GTNAC	5 cut(s)	35, 301, 363, 431, 971
MalI	GATC	7 cut(s)	234, 413, 481, 513, 716, 720, 896
MboI	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
MboII	GAAGA	6 cut(s)	12, 242, 247, 523, 526, 689
MflI	RGATCY	2 cut(s)	232, 479
MluCI	AATT	4 cut(s)	78, 209, 573, 591
MlyI	GAGTC	4 cut(s)	26, 620, 763, 895
MmeI	TCCRAC	1 cut(s)	798
MnlI	CCTC	7 cut(s)	295, 433, 541, 598, 601, 732, 747
MroI	TCCGGA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	3 cut(s)	641, 747, 942
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	3 cut(s)	477, 630, 878
MspR9I	CCNGG	2 cut(s)	764, 908
MvaI	CCWGG	2 cut(s)	764, 908
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	3 cut(s)	323, 332, 708
NcoI	CCATGG	2 cut(s)	69, 329
NdeII	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
NlaIII	CATG	4 cut(s)	29, 73, 291, 333
NlaIV	GGNNCC	4 cut(s)	43, 634, 777, 905
NmuCI	GTSAC	4 cut(s)	35, 301, 431, 971
NspI	RCATGY	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	76, 321, 377, 825
PleI	GAGTC	4 cut(s)	25, 620, 762, 894
PpsI	GAGTC	4 cut(s)	25, 620, 762, 894
PpuMI	RGGWCCY	1 cut(s)	775
PsiI	TTATAA	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	762, 906
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	762, 906
PspN4I	GGNNCC	4 cut(s)	43, 634, 777, 905
PspPI	GGNCC	2 cut(s)	775, 910
PspPPI	RGGWCCY	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	2 cut(s)	232, 479
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
SalI	GTCGAC	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	641, 747, 942
SatI	GCNGC	4 cut(s)	75, 320, 376, 824
Sau3AI	GATC	7 cut(s)	232, 411, 479, 511, 714, 718, 894
Sau96I	GGNCC	2 cut(s)	775, 910
SbfI	CCTGCAGG	1 cut(s)	373
SchI	GAGTC	4 cut(s)	26, 620, 763, 895
ScrFI	CCNGG	2 cut(s)	764, 908
SdaI	CCTGCAGG	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
Sse8387I	CCTGCAGG	1 cut(s)	373
Sse9I	AATT	4 cut(s)	78, 209, 573, 591
SsiI	CCGC	3 cut(s)	74, 702, 917
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	5 cut(s)	189, 279, 650, 674, 969
StyD4I	CCNGG	2 cut(s)	762, 906
StyI	CCWWGG	2 cut(s)	69, 329
TaaI	ACNGT	3 cut(s)	41, 790, 859
TaqI	TCGA	7 cut(s)	147, 387, 561, 624, 668, 717, 893
TasI	AATT	4 cut(s)	78, 209, 573, 591
TatI	WGTACW	1 cut(s)	790
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	641, 747, 942
Tru9I	TTAA	3 cut(s)	641, 747, 942
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	4 cut(s)	35, 301, 431, 971
TseI	GCWGC	3 cut(s)	319, 375, 823
Tsp45I	GTSAC	4 cut(s)	35, 301, 431, 971
TspDTI	ATGAA	4 cut(s)	133, 222, 239, 390
TspRI	CASTG	1 cut(s)	805
Vha464I	CTTAAG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	209, 573
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	5 cut(s)	189, 279, 650, 674, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.