Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

21773995 .. 21778534

Gene Structure 4540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAATCTGGCCCGAGTAAAGAGAGTGAATTTCAAAGCGAAAAATGGAAAGTTTTCGTATTGCTTGGTCCCTTTTGGCTCGGAAGGTAACCAAACAAGCAAGTTGAACTTTGGTGATGATGCTGGGGTTTCCGGCTCTGGCGTTGTGTCCACTCCCATTGTCCAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACGAAAATTCCCTTCTCATCATCATCTTCAGCCTCTGGTGAGGGCAACATTATAATTGACTCTGGCACCACGCTAACCATACTGGAGCAGTTCTCCTACTTGGAGCTAGAAAAAGCAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAGGGTCCCTCAGATTCCAATATCTCTTTGCTATAAGGCATCCAAGGATTTGAAGGTGCCAAATATTACTGTGCATTTCAGTGGTGCAGATGTGAAGTTGGAGCCAAATAACATCTTTATTAGGGTGAGCGACGAGGCTGTGTGCTTTCCATTTGTTCCGTCGCAGAGTATTTCGATCTATGGGAACCTAGCCCAGGCGGGATTCTTGGTGGGATATGACCTTAAGAAGAAGACTGTGTCCTTCAAGCCAACTGACTGCACCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

212

Amino Acids

22.99

Weight (kDa)

8.82

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	26 - 204	7.9e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	63 - 205	2.9e-27	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	287, 424
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	357, 566
AcsI	RAATTY	2 cut(s)	28, 228
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	34, 106, 421, 613
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	28, 228
Asp700I	GAANNNNTTC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	10, 67, 373
AsuHPI	GGTGA	3 cut(s)	125, 272, 505
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	67, 373
BanI	GGYRCC	2 cut(s)	287, 424
BbsI	GAAGAC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	563
BfaI	CTAG	2 cut(s)	329, 557
BfrI	CTTAAG	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	2 cut(s)	67, 373
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	3 cut(s)	10, 67, 373
BmiI	GGNNCC	7 cut(s)	69, 289, 374, 375, 426, 471, 554
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	109, 416
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	4 cut(s)	299, 331, 361, 393
BpmI	CTGGAG	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	411, 561, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	3 cut(s)	411, 561, 630
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	122
BsgI	GTGCAG	2 cut(s)	474, 610
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	287, 424
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	53, 359
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	2 cut(s)	53, 359
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	166, 543
BspACI	CCGC	2 cut(s)	357, 566
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	7 cut(s)	69, 289, 374, 375, 426, 471, 554
BspT107I	GGYRCC	2 cut(s)	287, 424
BspTI	CTTAAG	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	411, 561, 630
BssMI	GATC	2 cut(s)	166, 543
BssT1I	CCWWGG	2 cut(s)	411, 630
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	439, 604
BstAFI	CTTAAG	1 cut(s)	590
BstDEI	CTNAG	1 cut(s)	378
BstEII	GGTNACC	1 cut(s)	86
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	169, 546
BstMBI	GATC	2 cut(s)	166, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNI	CCWGG	1 cut(s)	563
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	561
BstUI	CGCG	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	10, 67, 373
CseI	GACGC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	168, 545
DpnII	GATC	2 cut(s)	166, 543
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	411, 630
Eco47I	GGWCC	2 cut(s)	67, 373
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	373
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	411, 630
ErhI	CCWWGG	2 cut(s)	411, 630
FaiI	YATR	6 cut(s)	209, 275, 302, 402, 549, 585
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	53, 359
FauI	CCCGC	2 cut(s)	350, 559
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	394
FspBI	CTAG	2 cut(s)	329, 557
GlaI	GCGC	1 cut(s)	365
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	2 cut(s)	217, 343
HindII	GTYRAC	2 cut(s)	217, 343
HinfI	GANTC	4 cut(s)	4, 281, 382, 570
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	3 cut(s)	125, 272, 505
Hpy166II	GTNNAC	3 cut(s)	150, 217, 343
Hpy188I	TCNGA	2 cut(s)	82, 381
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	150, 217, 343
Hpy99I	CGWCG	3 cut(s)	218, 503, 532
HpyAV	CCTTC	5 cut(s)	77, 193, 244, 415, 619
HpyCH4III	ACNGT	2 cut(s)	439, 604
HpyCH4V	TGCA	3 cut(s)	442, 455, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	1 cut(s)	378
HspAI	GCGC	1 cut(s)	364
KflI	GGGWCCC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	166, 543
LmnI	GCTCC	4 cut(s)	307, 325, 361, 469
LpnPI	CCDG	8 cut(s)	108, 123, 145, 243, 270, 290, 548, 575
LweI	GCATC	2 cut(s)	109, 416
MaeI	CTAG	2 cut(s)	329, 557
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	168, 545
MboI	GATC	2 cut(s)	166, 543
MboII	GAAGA	5 cut(s)	178, 181, 240, 607, 610
MluCI	AATT	3 cut(s)	28, 228, 276
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	6 cut(s)	196, 256, 265, 363, 387, 496
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	363
NdeII	GATC	2 cut(s)	166, 543
NlaIV	GGNNCC	7 cut(s)	69, 289, 374, 375, 426, 471, 554
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	4, 382, 570
PflFI	GACNNNGTC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	561
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	7 cut(s)	69, 289, 374, 375, 426, 471, 554
PspPI	GGNCC	3 cut(s)	10, 67, 373
PspPPI	RGGWCCY	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	591
Sau3AI	GATC	2 cut(s)	166, 543
Sau96I	GGNCC	3 cut(s)	10, 67, 373
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	563
SetI	ASST	8 cut(s)	88, 185, 330, 351, 426, 558, 591, 636
SfaNI	GCATC	2 cut(s)	109, 416
SinI	GGWCC	2 cut(s)	67, 373
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	3 cut(s)	28, 228, 276
SsiI	CCGC	2 cut(s)	357, 566
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	329, 557
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	411, 630
TaaI	ACNGT	2 cut(s)	439, 604
TaqI	TCGA	2 cut(s)	216, 542
TasI	AATT	3 cut(s)	28, 228, 276
TfiI	GAWTC	3 cut(s)	4, 382, 570
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	67, 373
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	2 cut(s)	28, 228
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	2 cut(s)	329, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.