Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

34274465 .. 34275790

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCAGCACCAGCAACAACAGCATTTGCACTCTTCCTTCTTTGTGTCTCTGATTTCTCCTCGGTCTCCGCTAAAGGGGGATTCACCATTGACCTAATTCACCGTGACTCGCCTCACTCTCCCTTTTACAATCCTTCAGAAACTCCATCCCAACGCTTGAAGAATGCCTTTCGCCGTTCCATAAGCCGACTCAACCATTTCAGTCAAACAGCTTCCCCTTCAGTAGCTCAGCCTAACCAGGCCGAGTCCACTATAACCAACAACAACGGCGAGTGCCCCGCTGAGGGGAGTGGTTCTGGTTCGCCTTGCCAATATAAAGTGAACTACGGTGATCAATCACACACAATCGGAGACATTGCCGTTGACACTCTAACCCTAACTTCCACTACCAGGAATAACGTTTCGTTTCCGAAAACAATAATCGGGTGTGGCCATGACAATGCTGGAACCTTTGACAAAAAAAGGTCTGGTATAGTTGGGCTTGGAGGTGGCGATGAGTCACTCATTACCCAATTGGATACTTCCATTGATGGAAAGTTTTCGTATTGCTTGGTTCCTTTTGGCTCGGAAGGTAACCAAACAAGCAAGATGAACTTTGGTGATGATGCTGGGGTTTCCGGCTCTGGTGTTGTGTCCACTCCCATTGTCCAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGGGTCGATAATACGAAAATTCCCTTCTCATCATCATCTTCAGCCTCTGGTGAGGGCAACATTATAATTGACTCTGGCACCACGTTAACCATACTGGAGCAGTTCTCCTACTTGGAGCTAGAAAAAGCAGTTGACAAGGTTGTCGGTGGGGAGCGCGTGAGGGTCCCTCAGATTCCAATATCTCTTTGCTATAAGGCATCCAAGGATTTGAAGGTGCCAAATATTACTGTGCATTTCAGTGGTGCAGATGTGAAGTTGGAGCCAAATAACATCTTTATTAGGGTGAGCGACGAGGCAGTGTGCTTTGCATTTGTTCCGTCGCAGAGTATTTCGATCTATGGGAACCTAGCCCAGGCGGGATTCTTGGTGGGATATGACCTTAAGAAGAAGACTGTGTCCTTCAAGCCAACTGACTGCACCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

375

Amino Acids

39.96

Weight (kDa)

6.09

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	67 - 201	2.2e-27	Xylanase inhibitor N-terminal
Asp	PF00026	105 - 366	1.7e-12	Eukaryotic aspartyl protease
TAXi_C	PF14541	225 - 367	1.6e-27	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
AasI	GACNNNNNNGTC	1 cut(s)	836
AccB1I	GGYRCC	2 cut(s)	773, 910
AccII	CGCG	1 cut(s)	852
AciI	CCGC	3 cut(s)	69, 279, 1052
AclI	AACGTT	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	714
AcuI	CTGAAG	3 cut(s)	120, 204, 720
AfiI	CCNNNNNNNGG	6 cut(s)	75, 283, 284, 285, 390, 1048
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	3 cut(s)	160, 907, 1099
AjnI	CCWGG	3 cut(s)	237, 389, 1047
AluBI	AGCT	3 cut(s)	212, 227, 814
AluI	AGCT	3 cut(s)	212, 227, 814
Alw26I	GTCTC	3 cut(s)	52, 70, 345
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	240, 430
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	1 cut(s)	859
AsuHPI	GGTGA	6 cut(s)	76, 92, 341, 611, 758, 991
AvaII	GGWCC	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	2 cut(s)	773, 910
BbsI	GAAGAC	1 cut(s)	1091
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	154, 524
BceAI	ACGGC	3 cut(s)	159, 283, 344
BciT130I	CCWGG	3 cut(s)	239, 391, 1049
BciVI	GTATCC	1 cut(s)	511
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	3 cut(s)	52, 70, 345
BfaI	CTAG	2 cut(s)	815, 1043
BfrI	CTTAAG	1 cut(s)	1076
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	239, 391, 1049
Bme18I	GGWCC	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	8 cut(s)	448, 555, 775, 860, 861, 912, 957, 1040
BmrFI	CCNGG	3 cut(s)	239, 391, 1049
BmsI	GCATC	2 cut(s)	595, 902
BpiI	GAAGAC	1 cut(s)	1091
BplI	GAGNNNNNCTC	4 cut(s)	785, 817, 847, 879
BpmI	CTGGAG	1 cut(s)	812
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	60, 897, 1047, 1116
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 283, 284, 285, 390, 1048
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	239, 391, 1049
BseDI	CCNNGG	4 cut(s)	60, 897, 1047, 1116
BseGI	GGATG	2 cut(s)	146, 893
BseLI	CCNNNNNNNGG	6 cut(s)	75, 283, 284, 285, 390, 1048
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	242, 273, 878
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	2 cut(s)	960, 1096
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	2 cut(s)	242, 432
BshNI	GGYRCC	2 cut(s)	773, 910
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	6 cut(s)	75, 283, 284, 285, 390, 1048
BsmAI	GTCTC	3 cut(s)	52, 70, 345
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	242, 432
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	331, 652, 1029
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	69, 279, 1052
BspANI	GGCC	2 cut(s)	242, 432
BspCNI	CTCAG	3 cut(s)	241, 274, 877
BspFNI	CGCG	1 cut(s)	852
BspLI	GGNNCC	8 cut(s)	448, 555, 775, 860, 861, 912, 957, 1040
BspT107I	GGYRCC	2 cut(s)	773, 910
BspTI	CTTAAG	1 cut(s)	1076
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	795
BssECI	CCNNGG	4 cut(s)	60, 897, 1047, 1116
BssMI	GATC	3 cut(s)	331, 652, 1029
BssT1I	CCWWGG	2 cut(s)	897, 1116
Bst2UI	CCWGG	3 cut(s)	239, 391, 1049
Bst4CI	ACNGT	4 cut(s)	104, 329, 925, 1090
Bst6I	CTCTTC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	1076
BstDEI	CTNAG	3 cut(s)	228, 282, 864
BstEII	GGTNACC	1 cut(s)	572
BstENI	CCTNNNNNAGG	1 cut(s)	1046
BstF5I	GGATG	2 cut(s)	146, 893
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	3 cut(s)	334, 655, 1032
BstMAI	GTCTC	3 cut(s)	52, 70, 345
BstMBI	GATC	3 cut(s)	331, 652, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	3 cut(s)	239, 391, 1049
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	237, 389, 1047
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	1091
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	242, 432
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	146, 893
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	2 cut(s)	940, 999
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	1 cut(s)	859
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	228, 282, 864
DpnI	GATC	3 cut(s)	333, 654, 1031
DpnII	GATC	3 cut(s)	331, 652, 1029
DrdI	GACNNNNNNGTC	1 cut(s)	836
DseDI	GACNNNNNNGTC	1 cut(s)	836
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	897, 1116
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	859
Eco57I	CTGAAG	3 cut(s)	120, 204, 720
Eco91I	GGTNACC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	1 cut(s)	1046
EcoO109I	RGGNCCY	1 cut(s)	859
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	3 cut(s)	237, 389, 1047
EcoT14I	CCWWGG	2 cut(s)	897, 1116
ErhI	CCWWGG	2 cut(s)	897, 1116
FaeI	CATG	1 cut(s)	437
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 578, 610
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	1 cut(s)	433
FauI	CCCGC	2 cut(s)	286, 1045
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	133, 880
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	815, 1043
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	242, 432
HapII	CCGG	1 cut(s)	618
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	3 cut(s)	364, 783, 829
HindII	GTYRAC	3 cut(s)	364, 783, 829
HinfI	GANTC	8 cut(s)	81, 107, 189, 245, 497, 767, 868, 1056
HpaI	GTTAAC	1 cut(s)	783
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	6 cut(s)	76, 92, 341, 611, 758, 991
Hpy166II	GTNNAC	6 cut(s)	249, 322, 364, 636, 783, 829
Hpy188I	TCNGA	6 cut(s)	52, 139, 350, 411, 568, 867
Hpy188III	TCNNGA	1 cut(s)	679
Hpy8I	GTNNAC	6 cut(s)	249, 322, 364, 636, 783, 829
Hpy99I	CGWCG	2 cut(s)	989, 1018
HpyAV	CCTTC	8 cut(s)	47, 144, 228, 563, 679, 730, 901, 1105
HpyCH4III	ACNGT	4 cut(s)	104, 329, 925, 1090
HpyCH4IV	ACGT	2 cut(s)	399, 779
HpyCH4V	TGCA	5 cut(s)	29, 928, 941, 1004, 1113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	3 cut(s)	228, 282, 864
HpySE526I	ACGT	2 cut(s)	399, 779
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	1 cut(s)	850
KflI	GGGWCCC	1 cut(s)	859
Ksp22I	TGATCA	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	783
Kzo9I	GATC	3 cut(s)	331, 652, 1029
LmnI	GCTCC	4 cut(s)	793, 811, 847, 955
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	595, 902
MaeI	CTAG	2 cut(s)	815, 1043
MaeII	ACGT	2 cut(s)	399, 779
MaeIII	GTNAC	3 cut(s)	104, 498, 572
MalI	GATC	3 cut(s)	333, 654, 1031
MboI	GATC	3 cut(s)	331, 652, 1029
MboII	GAAGA	7 cut(s)	25, 172, 664, 667, 726, 1093, 1096
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	4 cut(s)	96, 512, 714, 762
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	5 cut(s)	101, 183, 254, 506, 761
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	2 cut(s)	782, 1077
MslI	CAYNNNNRTG	2 cut(s)	438, 933
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	3 cut(s)	239, 391, 1049
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	3 cut(s)	239, 391, 1049
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NdeII	GATC	3 cut(s)	331, 652, 1029
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	8 cut(s)	448, 555, 775, 860, 861, 912, 957, 1040
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	104, 498
PctI	GAATGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	81, 868, 1056
PflFI	GACNNNGTC	1 cut(s)	1090
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	5 cut(s)	101, 183, 253, 505, 761
PpsI	GAGTC	5 cut(s)	101, 183, 253, 505, 761
PpuMI	RGGWCCY	1 cut(s)	859
PsiI	TTATAA	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	3 cut(s)	237, 389, 1047
PspEI	GGTNACC	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	3 cut(s)	237, 389, 1047
PspN4I	GGNNCC	8 cut(s)	448, 555, 775, 860, 861, 912, 957, 1040
PspPI	GGNCC	1 cut(s)	859
PspPPI	RGGWCCY	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	1090
RseI	CAYNNNNRTG	2 cut(s)	438, 933
SaqAI	TTAA	2 cut(s)	782, 1077
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	331, 652, 1029
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	5 cut(s)	101, 183, 254, 506, 761
ScrFI	CCNGG	3 cut(s)	239, 391, 1049
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	595, 902
SinI	GGWCC	1 cut(s)	859
SmiMI	CAYNNNNRTG	2 cut(s)	438, 933
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
Sse9I	AATT	4 cut(s)	96, 512, 714, 762
SsiI	CCGC	3 cut(s)	69, 279, 1052
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	2 cut(s)	815, 1043
StyD4I	CCNGG	3 cut(s)	237, 389, 1047
StyI	CCWWGG	2 cut(s)	897, 1116
TaaI	ACNGT	4 cut(s)	104, 329, 925, 1090
TaiI	ACGT	2 cut(s)	402, 782
TaqI	TCGA	2 cut(s)	702, 1028
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	96, 512, 714, 762
TfiI	GAWTC	3 cut(s)	81, 868, 1056
Tru1I	TTAA	2 cut(s)	782, 1077
Tru9I	TTAA	2 cut(s)	782, 1077
TscAI	CASTG	2 cut(s)	940, 999
TseFI	GTSAC	2 cut(s)	104, 498
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	104, 498
TspDTI	ATGAA	1 cut(s)	605
TspGWI	ACGGA	1 cut(s)	1002
TspRI	CASTG	2 cut(s)	940, 999
Tth111I	GACNNNGTC	1 cut(s)	1090
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	1 cut(s)	859
XagI	CCTNNNNNAGG	1 cut(s)	1046
XapI	RAATTY	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	2 cut(s)	815, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.