Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

7534883 .. 7536561

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTTGCGATTTTGGTTAACCATCCTCTCCCCATTGCAATGGCATTAGCATTATCTGTTGCATACTTGTTGCATTTTTCTCTAGTACAAGCTGACCGTAATGGCGGCTTCAGCGTGAAGCTAATTCACCGCAACTCCCCATTGTCTCCTCTCCACAATCCTTCAGAAACACCCTCGCAACGCGTGACAAATGCTTTGCAACGTTCCATCAACCGTGCCAATTTCTTCGGATCAACTAGTTTGTTACCTTCATCAAACGATCCTGAATCCACAATAATATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCACTCCTCCTGTAGAAATCTCAGGAGTTGCGGATACAGCTAGCGATCTTACATGGATTCAATGCATGCCTTGCCGCAACTGCTACAAGCAAAAAGCTCCGCTCTATGATCCGAAGAATTCCAATACATACAAAGTGGTTTTTCGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTCTTGCTCTGATGAAGATATCTGTTACTACAAACGGTTCTATAGGGATGGATCCTACAGCAATGGAGTTGTATCAACAGAGACAATCACTTTCAACTCCACTAGCTTAGGTCAAACAATTTCACTCCCACAGATTATAATTGGTTGTGGGCAGAATAACAGTGGACTCTCTAATGAAGATGGATCAAGCATGATTGGACTCAGTCGTGGATCAATGTCCCTTATCTCCCAAATGGATTCTTCAATTGATGGAAAATTCTCCTACTGCCTTGTTCCAGCTTTTTCACAACTCAACTCTTCAAGCAAAATGAGCTTTGGCAATAATGCTGTGGTTTCTGGTGCCACGGTAGTTTCTACCCCATTACTTTCAGGAGACCTAAAATCTTACTATTTCATAAAGCTGGAAGCAATGAGTGTGGGACGAAAGAGATTGCAATACAACAGTACACTGATGACAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTTTTACGATAGGCTGGAATTGACAGTGACAAAGGCCATAAGATTGAAACGAGTAAAAGACGCTAGTCGCTACTTAAGCCTTTGCTACAAGACCAAATCGACTATAACAGCTCCCATAATCACTGCACATTTCACCGGTGCCGATGTCAAGTTGAAAGCTTCGAACACTTTCATAAGAGTGTCAATGGATGTTGTTTGCTTTGCTTTCAAACCCATTACTCAAGGTAATGCCATCTTTGGCAATATGGCACAAACGAATTTCTTGATAGGCTATGACCTCAAGAAAGAGTTTCTCTCTTTTAAGCCAACTGATTGCACTAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

448

Amino Acids

48.81

Weight (kDa)

9.16

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	98 - 439	8.1e-13	Eukaryotic aspartyl protease
TAXi_N	PF14543	99 - 272	8e-46	Xylanase inhibitor N-terminal
TAXi_C	PF14541	295 - 440	8e-28	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccB1I	GGYRCC	2 cut(s)	833, 1154
AccBSI	CCGCTC	1 cut(s)	418
AccII	CGCG	1 cut(s)	183
AciI	CCGC	5 cut(s)	105, 130, 347, 391, 416
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	7 cut(s)	238, 254, 419, 540, 553, 685, 712
AcsI	RAATTY	3 cut(s)	433, 749, 1273
AcuI	CTGAAG	2 cut(s)	94, 147
AfaI	GTAC	3 cut(s)	87, 296, 940
AfiI	CCNNNNNNNGG	1 cut(s)	965
AflII	CTTAAG	1 cut(s)	1090
AflIII	ACRYGT	1 cut(s)	181
AgeI	ACCGGT	1 cut(s)	1151
AgsI	TTSAA	7 cut(s)	377, 589, 738, 795, 1063, 1171, 1225
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	958
Alw26I	GTCTC	3 cut(s)	150, 569, 861
AlwI	GGATC	7 cut(s)	238, 254, 419, 540, 553, 685, 712
AoxI	GGCC	1 cut(s)	1050
ApoI	RAATTY	3 cut(s)	433, 749, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsiGI	ACCGGT	1 cut(s)	1151
Asp700I	GAANNNNTTC	1 cut(s)	1184
AsuHPI	GGTGA	2 cut(s)	119, 1141
AsuII	TTCGAA	1 cut(s)	1178
AsuNHI	GCTAGC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	833, 1154
BccI	CCATC	6 cut(s)	30, 215, 536, 668, 737, 1256
BciT130I	CCWGG	1 cut(s)	960
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	150, 569, 861
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	5 cut(s)	83, 237, 357, 597, 1080
BfmI	CTRYAG	3 cut(s)	327, 535, 550
BfrI	CTTAAG	1 cut(s)	1090
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	106, 391
BlsI	GCNGC	2 cut(s)	107, 392
Bme1390I	CCNGG	1 cut(s)	960
BmiI	GGNNCC	4 cut(s)	493, 547, 835, 1156
BmrFI	CCNGG	1 cut(s)	960
BmtI	GCTAGC	1 cut(s)	360
BoxI	GACNNNNGTC	1 cut(s)	1080
BplI	GAGNNNNNCTC	2 cut(s)	1295, 1327
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	601
Bpu14I	TTCGAA	1 cut(s)	1178
BpuEI	CTTGAG	3 cut(s)	451, 1221, 1280
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	837
BsaWI	WCCGGW	1 cut(s)	1151
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 940, 970
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse118I	RCCGGY	1 cut(s)	1151
Bse3DI	GCAATG	4 cut(s)	33, 45, 562, 909
BseBI	CCWGG	1 cut(s)	960
BseDI	CCNNGG	1 cut(s)	837
BseGI	GGATG	3 cut(s)	22, 547, 1210
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseMI	GCAATG	4 cut(s)	33, 45, 562, 909
BseMII	CTCAG	2 cut(s)	351, 709
BseRI	GAGGAG	2 cut(s)	138, 312
BsgI	GTGCAG	1 cut(s)	1125
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	1052
BshNI	GGYRCC	2 cut(s)	833, 1154
BshTI	ACCGGT	1 cut(s)	1151
BsiSI	CCGG	1 cut(s)	1152
BslFI	GGGAC	3 cut(s)	697, 927, 1003
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmAI	GTCTC	3 cut(s)	150, 569, 861
BsmFI	GGGAC	3 cut(s)	697, 927, 1003
BsnI	GGCC	1 cut(s)	1052
Bso31I	GGTCTC	1 cut(s)	861
Bsp119I	TTCGAA	1 cut(s)	1178
Bsp143I	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
BspACI	CCGC	5 cut(s)	105, 130, 347, 391, 416
BspANI	GGCC	1 cut(s)	1052
BspCNI	CTCAG	2 cut(s)	350, 708
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	4 cut(s)	493, 547, 835, 1156
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	7 cut(s)	238, 254, 419, 540, 553, 685, 712
BspT104I	TTCGAA	1 cut(s)	1178
BspT107I	GGYRCC	2 cut(s)	833, 1154
BspTI	CTTAAG	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	861
BsrBI	CCGCTC	1 cut(s)	418
BsrDI	GCAATG	4 cut(s)	33, 45, 562, 909
BsrFI	RCCGGY	1 cut(s)	1151
BssAI	RCCGGY	1 cut(s)	1151
BssECI	CCNNGG	1 cut(s)	837
BssMI	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	7 cut(s)	98, 215, 531, 656, 841, 938, 1042
Bst6I	CTCTTC	1 cut(s)	796
BstAFI	CTTAAG	1 cut(s)	1090
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	1178
BstC8I	GCNNGC	2 cut(s)	358, 383
BstDEI	CTNAG	3 cut(s)	337, 601, 695
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	3 cut(s)	22, 547, 1210
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	7 cut(s)	233, 262, 364, 427, 548, 680, 707
BstMAI	GTCTC	3 cut(s)	150, 569, 861
BstMBI	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 396, 804, 1092
BstNI	CCWGG	1 cut(s)	960
BstNSI	RCATGY	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstSCI	CCNGG	1 cut(s)	958
BstSFI	CTRYAG	3 cut(s)	327, 535, 550
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	1052
BtgI	CCRYGG	1 cut(s)	837
BtsCI	GGATG	3 cut(s)	22, 547, 1210
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	4 cut(s)	661, 941, 1047, 1137
Cac8I	GCNNGC	2 cut(s)	358, 383
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	1151
CseI	GACGC	1 cut(s)	1085
Csp6I	GTAC	3 cut(s)	86, 295, 939
CspAI	ACCGGT	1 cut(s)	1151
CspCI	CAANNNNNGTGG	2 cut(s)	891, 926
CviAII	CATG	4 cut(s)	301, 369, 382, 685
CviQI	GTAC	3 cut(s)	86, 295, 939
DdeI	CTNAG	3 cut(s)	337, 601, 695
DpnI	GATC	7 cut(s)	232, 261, 363, 426, 547, 679, 706
DpnII	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
Eam1104I	CTCTTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	796
Eco31I	GGTCTC	1 cut(s)	861
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	94, 147
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	958
EcoRV	GATATC	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	383
FaeI	CATG	4 cut(s)	304, 372, 385, 688
FaqI	GGGAC	3 cut(s)	697, 927, 1003
FatI	CATG	4 cut(s)	300, 368, 381, 684
Fnu4HI	GCNGC	2 cut(s)	106, 391
FokI	GGATG	3 cut(s)	9, 554, 1217
Fsp4HI	GCNGC	2 cut(s)	106, 391
FspBI	CTAG	5 cut(s)	83, 237, 357, 597, 1080
GluI	GCNGC	2 cut(s)	106, 391
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	1052
HapII	CCGG	1 cut(s)	1152
HgaI	GACGC	1 cut(s)	1085
Hin1II	CATG	4 cut(s)	304, 372, 385, 688
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	6 cut(s)	266, 373, 660, 693, 731, 983
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	1152
HphI	GGTGA	2 cut(s)	119, 1141
Hpy166II	GTNNAC	3 cut(s)	19, 659, 941
Hpy188I	TCNGA	5 cut(s)	166, 230, 283, 429, 505
Hpy188III	TCNNGA	6 cut(s)	263, 301, 339, 864, 1279, 1297
Hpy8I	GTNNAC	3 cut(s)	19, 659, 941
HpyAV	CCTTC	3 cut(s)	171, 258, 957
HpyCH4III	ACNGT	7 cut(s)	98, 215, 531, 656, 841, 938, 1042
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	8 cut(s)	38, 62, 73, 199, 381, 928, 1142, 1332
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 396, 804, 1092
HpyF3I	CTNAG	3 cut(s)	337, 601, 695
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	304, 372, 385, 688
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
LmnI	GCTCC	3 cut(s)	418, 961, 1132
MaeI	CTAG	5 cut(s)	83, 237, 357, 597, 1080
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	5 cut(s)	184, 243, 518, 1005, 1042
MalI	GATC	7 cut(s)	232, 261, 363, 426, 547, 679, 706
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
MboII	GAAGA	6 cut(s)	217, 442, 521, 683, 726, 783
MfeI	CAATTG	2 cut(s)	312, 738
MflI	RGATCY	1 cut(s)	545
MluI	ACGCGT	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	654, 687
MnlI	CCTC	8 cut(s)	36, 159, 184, 308, 333, 475, 505, 1304
Mph1103I	ATGCAT	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	1184
MseI	TTAA	4 cut(s)	18, 1091, 1317, 1342
MslI	CAYNNNNRTG	2 cut(s)	38, 1193
MspCI	CTTAAG	1 cut(s)	1090
MspI	CCGG	1 cut(s)	1152
MspR9I	CCNGG	1 cut(s)	960
MunI	CAATTG	2 cut(s)	312, 738
MvaI	CCWGG	1 cut(s)	960
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 396, 804, 1092
NdeII	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	4 cut(s)	304, 372, 385, 688
NlaIV	GGNNCC	4 cut(s)	493, 547, 835, 1156
NmuCI	GTSAC	2 cut(s)	184, 1042
NsiI	ATGCAT	1 cut(s)	383
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	1178
PaeI	GCATGC	1 cut(s)	385
PagI	TCATGA	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	1184
PfeI	GAWTC	4 cut(s)	266, 373, 731, 983
PflFI	GACNNNGTC	1 cut(s)	696
PfoI	TCCNGGA	1 cut(s)	958
PinAI	ACCGGT	1 cut(s)	1151
PkrI	GCNGC	2 cut(s)	107, 392
PleI	GAGTC	2 cut(s)	654, 687
PpsI	GAGTC	2 cut(s)	654, 687
PshAI	GACNNNNGTC	1 cut(s)	1080
PsiI	TTATAA	1 cut(s)	632
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	958
PspGI	CCWGG	1 cut(s)	958
PspN4I	GGNNCC	4 cut(s)	493, 547, 835, 1156
PsuI	RGATCY	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	696
RsaI	GTAC	3 cut(s)	87, 296, 940
RsaNI	GTAC	3 cut(s)	86, 295, 939
RseI	CAYNNNNRTG	2 cut(s)	38, 1193
SaqAI	TTAA	4 cut(s)	18, 1091, 1317, 1342
SatI	GCNGC	2 cut(s)	106, 391
Sau3AI	GATC	7 cut(s)	230, 259, 361, 424, 545, 677, 704
SchI	GAGTC	2 cut(s)	654, 687
ScrFI	CCNGG	1 cut(s)	960
SfcI	CTRYAG	3 cut(s)	327, 535, 550
SfuI	TTCGAA	1 cut(s)	1178
SgrAI	CRCCGGYG	1 cut(s)	1151
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1193
SmlI	CTYRAG	4 cut(s)	466, 1090, 1236, 1295
SmoI	CTYRAG	4 cut(s)	466, 1090, 1236, 1295
SpeI	ACTAGT	1 cut(s)	236
SphI	GCATGC	1 cut(s)	385
SsiI	CCGC	5 cut(s)	105, 130, 347, 391, 416
SspMI	CTAG	5 cut(s)	83, 237, 357, 597, 1080
StyD4I	CCNGG	1 cut(s)	958
TaaI	ACNGT	7 cut(s)	98, 215, 531, 656, 841, 938, 1042
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	1115, 1178
TatI	WGTACW	2 cut(s)	85, 938
TauI	GCSGC	2 cut(s)	108, 393
TfiI	GAWTC	4 cut(s)	266, 373, 731, 983
Tru1I	TTAA	4 cut(s)	18, 1091, 1317, 1342
Tru9I	TTAA	4 cut(s)	18, 1091, 1317, 1342
TscAI	CASTG	4 cut(s)	661, 948, 1047, 1144
TseFI	GTSAC	2 cut(s)	184, 1042
Tsp45I	GTSAC	2 cut(s)	184, 1042
TspDTI	ATGAA	6 cut(s)	240, 317, 522, 684, 877, 1177
TspRI	CASTG	4 cut(s)	661, 948, 1047, 1144
Tth111I	GACNNNGTC	1 cut(s)	696
Vha464I	CTTAAG	1 cut(s)	1090
XapI	RAATTY	3 cut(s)	433, 749, 1273
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	1184
XspI	CTAG	5 cut(s)	83, 237, 357, 597, 1080
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.