FvH4_7g07650

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7532724 .. 7534293
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07650.t1

Sequence Viewer

Length: 1329 bp
ATGGCAGCAACAACGGCATTTGTACTCTTCCTTCTTTGTGTCTCTCATTTCTCTTGGGTCTCAGCTAAAGGGGGATTCACCATTGACCTAATTCACCGTGACTCACCTCGCTCTCCCTTCTACAACCCTTCAGAAACTCCATCCCAACGCTTGAAGAATGCCTTCCACCGTTCCTTCGGTCGACTCAGCCATGTCAACCCAACAGCTTCCTCTTCAGTAGCTCAGCCTAACCAGGCCGAGTCCACTATAATCAACAACCGCGGCGAGTACCTCATGGAGTTGTCTATCGGAACACCACCAGTTCCGATCAAGGCCATCGCTGACACTGGAAGTGACCTCATCTGGACTCAGTGCAAGCCTTGCGTTGATTGCTACACGCAAACCGATCCTATTTTCGACCCCTCAAAATCGTCTACTTACAAAACCATTCCTTGCGCTTCAAACCAATGCACTGAGTTGAAGGGCAAGTGCCCCACCGCGGGGAACGGTTCAAGTTCAGCTTGCCCATACGAAGTGAACTATGGTGATCAGTCACACACAATCGGAGATATTGCCGTGGATACCCTAACCCTAGCTTCCACTACCGGGAGAGACGTTTCCTTCCCAAAAATCATTATCGGTTGTGGCCACGATAATGCTGGAACATTTGACAAAAATGGGTCTGGAATAGTTGGACTCGGAGGGGGTGACGAGTCACTGATTACCCAACTGAGCACTTCTATAGATGGAAAATTTTCGTATTGCTTGGTCCCTTTTGCCTCAGAAGGTGACCAGACAAGCAAGTTGAACTTTGGTGACACTGCTGTGGTTTCCGGCACTGGCGTTGTGTCCACTCCCATCGTCCAAGATCAAACCAAAAAAACCTTCTTCTTCTTGACATTGGACGCTATAAGCGTCGGCAACACGAAAATTCCCTTCTCATCATCATCATCTTCACCCTCTGGTGACGGCAACATTATAATCGACTCCGGCACCACGCTAACCATACTAGAACAGTCCTTCTACTCAAACCTAGAAGATGCAGTTGACAAGGTTGTCGGTAGGGAGCGTACATTCATCCCAGGGATTCCAATGTCTCTTTGCTACACCGTGAGTCTGTCCGAAGAATTGAAAGTGCCAAATATTACTGTAAATTTCAGTGGTGCGGATGTGGAGTTGGAGCCAAAGAACACGTTTGTTAGAGTCAGTGACGAGGCAGTGTGTTTTGCTTTTGCACCGTCGCAAAGTCTTTCGATCTACGGGAACCTGGCTCAGGCAGGTTTCGTGGTAGGATATGACCTTAAGAAGAAGACTGTGTCCTTCAAGCGAACTGACTGCACCAAGGTCTAA

Protein Analysis

443

Amino Acids

47.14

Weight (kDa)

5.23

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 89 - 142 5.2e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 90 - 266 1.7e-57 Xylanase inhibitor N-terminal
Asp PF00026 169 - 434 1.1e-12 Eukaryotic aspartyl protease
TAXi_C PF14541 290 - 435 6.6e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AasI GACNNNNNNGTC 1 cut(s) 1034
Acc36I ACCTGC 1 cut(s) 1247
AccB1I GGYRCC 1 cut(s) 971
AccI GTMKAC 2 cut(s) 181, 413
AccII CGCG 2 cut(s) 261, 479
AciI CCGC 5 cut(s) 259, 261, 477, 479, 1145
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 3 cut(s) 731, 909, 1132
AcuI CTGAAG 2 cut(s) 114, 198
AfaI GTAC 3 cut(s) 24, 269, 1051
AfiI CCNNNNNNNGG 5 cut(s) 478, 479, 480, 585, 1252
AflII CTTAAG 1 cut(s) 1280
AflIII ACRYGT 1 cut(s) 1170
AgsI TTSAA 7 cut(s) 154, 441, 460, 492, 787, 1111, 1303
AjnI CCWGG 3 cut(s) 231, 1060, 1245
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AleI CACNNNNGTG 1 cut(s) 803
AluBI AGCT 5 cut(s) 65, 206, 221, 500, 575
AluI AGCT 5 cut(s) 65, 206, 221, 500, 575
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 4 cut(s) 46, 64, 585, 1080
AlwI GGATC 1 cut(s) 380
AoxI GGCC 3 cut(s) 234, 312, 625
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 731, 909, 1132
Asp700I GAANNNNTTC 2 cut(s) 161, 733
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 748
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 9 cut(s) 70, 86, 96, 536, 698, 779, 806, 927, 956
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 627
BanI GGYRCC 1 cut(s) 971
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 1 cut(s) 1295
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 148, 323, 719, 845
BceAI ACGGC 3 cut(s) 30, 539, 964
BcgI CGANNNNNNTGC 1 cut(s) 1296
BciT130I CCWGG 3 cut(s) 233, 1062, 1247
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 4 cut(s) 46, 64, 585, 1080
BfaI CTAG 3 cut(s) 572, 989, 1013
BfmI CTRYAG 1 cut(s) 720
BfrI CTTAAG 1 cut(s) 1280
BfuAI ACCTGC 1 cut(s) 1247
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 2 cut(s) 6, 262
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 2 cut(s) 7, 263
Bme1390I CCNGG 4 cut(s) 233, 586, 1062, 1247
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 1 cut(s) 748
BmiI GGNNCC 4 cut(s) 750, 973, 1161, 1244
BmrFI CCNGG 4 cut(s) 233, 586, 1062, 1247
BmsI GCATC 1 cut(s) 1009
BpiI GAAGAC 1 cut(s) 1295
Bpu10I CCTNAGC 1 cut(s) 1251
Bpu1102I GCTNAGC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 6 cut(s) 259, 477, 555, 1060, 1061, 1320
Bsc4I CCNNNNNNNGG 5 cut(s) 478, 479, 480, 585, 1252
Bse1I ACTGG 3 cut(s) 299, 331, 823
BseBI CCWGG 3 cut(s) 233, 1062, 1247
BseDI CCNNGG 6 cut(s) 259, 477, 555, 1060, 1061, 1320
BseGI GGATG 3 cut(s) 140, 1056, 1153
BseLI CCNNNNNNNGG 5 cut(s) 478, 479, 480, 585, 1252
BseMII CTCAG 8 cut(s) 75, 199, 236, 362, 444, 701, 774, 1265
BseNI ACTGG 3 cut(s) 299, 331, 823
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 1300
Bsh1236I CGCG 2 cut(s) 261, 479
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 236, 314, 627
BshNI GGYRCC 1 cut(s) 971
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 716
BsiSI CCGG 3 cut(s) 585, 813, 969
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 5 cut(s) 478, 479, 480, 585, 1252
BsmAI GTCTC 4 cut(s) 46, 64, 585, 1080
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 3 cut(s) 236, 314, 627
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 473, 716
Bsp143I GATC 5 cut(s) 306, 385, 526, 847, 1233
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 5 cut(s) 259, 261, 477, 479, 1145
BspANI GGCC 3 cut(s) 236, 314, 627
BspCNI CTCAG 8 cut(s) 74, 198, 235, 361, 445, 702, 773, 1264
BspFNI CGCG 2 cut(s) 261, 479
BspLI GGNNCC 4 cut(s) 750, 973, 1161, 1244
BspMI ACCTGC 1 cut(s) 1247
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 971
BspTI CTTAAG 1 cut(s) 1280
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 3 cut(s) 299, 331, 823
BssECI CCNNGG 6 cut(s) 259, 477, 555, 1060, 1061, 1320
BssMI GATC 5 cut(s) 306, 385, 526, 847, 1233
BssT1I CCWWGG 1 cut(s) 1320
Bst2UI CCWGG 3 cut(s) 233, 1062, 1247
Bst4CI ACNGT 8 cut(s) 98, 170, 488, 996, 1090, 1129, 1218, 1294
Bst6I CTCTTC 2 cut(s) 32, 217
BstAFI CTTAAG 1 cut(s) 1280
BstAPI GCANNNNNTGC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 356, 502
BstDEI CTNAG 8 cut(s) 61, 185, 222, 348, 453, 710, 760, 1251
BstDSI CCRYGG 3 cut(s) 259, 477, 555
BstEII GGTNACC 1 cut(s) 767
BstENI CCTNNNNNAGG 1 cut(s) 1250
BstF5I GGATG 3 cut(s) 140, 1056, 1153
BstFNI CGCG 2 cut(s) 261, 479
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 5 cut(s) 309, 388, 529, 850, 1236
BstMAI GTCTC 4 cut(s) 46, 64, 585, 1080
BstMBI GATC 5 cut(s) 306, 385, 526, 847, 1233
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 14, 360, 369
BstNI CCWGG 3 cut(s) 233, 1062, 1247
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 4 cut(s) 231, 584, 1060, 1245
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 2 cut(s) 261, 479
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 1295
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 3 cut(s) 236, 314, 627
BtgI CCRYGG 3 cut(s) 259, 477, 555
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 140, 1056, 1153
BtsI GCAGTG 2 cut(s) 798, 1203
BtsIMutI CAGTG 9 cut(s) 324, 356, 450, 695, 798, 816, 1144, 1192, 1203
BveI ACCTGC 1 cut(s) 1247
Cac8I GCNNGC 2 cut(s) 356, 502
CfoI GCGC 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 748
Cfr42I CCGCGG 2 cut(s) 262, 480
CseI GACGC 2 cut(s) 883, 893
Csp6I GTAC 3 cut(s) 23, 268, 1050
CviAII CATG 2 cut(s) 191, 274
CviQI GTAC 3 cut(s) 23, 268, 1050
DdeI CTNAG 8 cut(s) 61, 185, 222, 348, 453, 710, 760, 1251
DpnI GATC 5 cut(s) 308, 387, 528, 849, 1235
DpnII GATC 5 cut(s) 306, 385, 526, 847, 1233
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 2 cut(s) 32, 217
EarI CTCTTC 2 cut(s) 32, 217
Eco130I CCWWGG 1 cut(s) 1320
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 2 cut(s) 114, 198
Eco91I GGTNACC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 1250
EcoO65I GGTNACC 1 cut(s) 767
EcoRII CCWGG 3 cut(s) 231, 1060, 1245
EcoT14I CCWWGG 1 cut(s) 1320
ErhI CCWWGG 1 cut(s) 1320
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 2 cut(s) 194, 277
FalI AAGNNNNNCTT 6 cut(s) 146, 178, 484, 516, 773, 805
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 190, 273
FauI CCCGC 1 cut(s) 472
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 2 cut(s) 181, 413
Fnu4HI GCNGC 2 cut(s) 6, 262
FokI GGATG 3 cut(s) 127, 1043, 1160
Fsp4HI GCNGC 2 cut(s) 6, 262
FspBI CTAG 3 cut(s) 572, 989, 1013
GlaI GCGC 1 cut(s) 436
GluI GCNGC 2 cut(s) 6, 262
HaeIII GGCC 3 cut(s) 236, 314, 627
HapII CCGG 3 cut(s) 585, 813, 969
HgaI GACGC 2 cut(s) 883, 893
HhaI GCGC 1 cut(s) 437
Hin1II CATG 2 cut(s) 194, 277
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 3 cut(s) 182, 196, 1027
HindII GTYRAC 3 cut(s) 182, 196, 1027
HpaII CCGG 3 cut(s) 585, 813, 969
HphI GGTGA 9 cut(s) 70, 86, 96, 536, 698, 779, 806, 927, 956
Hpy166II GTNNAC 7 cut(s) 182, 196, 243, 414, 517, 831, 1027
Hpy188I TCNGA 7 cut(s) 133, 290, 306, 545, 680, 763, 1102
Hpy188III TCNNGA 3 cut(s) 343, 663, 874
Hpy8I GTNNAC 7 cut(s) 182, 196, 243, 414, 517, 831, 1027
Hpy99I CGWCG 2 cut(s) 899, 1222
HpyCH4III ACNGT 8 cut(s) 98, 170, 488, 996, 1090, 1129, 1218, 1294
HpyCH4IV ACGT 2 cut(s) 594, 1172
HpyCH4V TGCA 5 cut(s) 354, 450, 1022, 1214, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 360, 369
HpyF3I CTNAG 8 cut(s) 61, 185, 222, 348, 453, 710, 760, 1251
HpySE526I ACGT 2 cut(s) 594, 1172
Hsp92II CATG 2 cut(s) 194, 277
HspAI GCGC 1 cut(s) 435
Ksp22I TGATCA 1 cut(s) 526
KspI CCGCGG 2 cut(s) 262, 480
Kzo9I GATC 5 cut(s) 306, 385, 526, 847, 1233
LmnI GCTCC 2 cut(s) 1045, 1159
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 1009
MaeI CTAG 3 cut(s) 572, 989, 1013
MaeII ACGT 2 cut(s) 594, 1172
MaeIII GTNAC 9 cut(s) 98, 332, 531, 686, 693, 767, 794, 944, 1187
MalI GATC 5 cut(s) 308, 387, 528, 849, 1235
MboI GATC 5 cut(s) 306, 385, 526, 847, 1233
MhlI GDGCHC 2 cut(s) 473, 716
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 5 cut(s) 90, 731, 909, 1106, 1132
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 9 cut(s) 95, 177, 248, 340, 669, 701, 959, 1102, 1191
MmeI TCCRAC 2 cut(s) 652, 1137
MnlI CCTC 9 cut(s) 117, 220, 281, 347, 412, 674, 769, 949, 1186
Mox20I TGGCCA 1 cut(s) 627
MroXI GAANNNNTTC 2 cut(s) 161, 733
MscI TGGCCA 1 cut(s) 627
MseI TTAA 1 cut(s) 1281
MslI CAYNNNNRTG 2 cut(s) 633, 803
Msp20I TGGCCA 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 261, 479
MspCI CTTAAG 1 cut(s) 1280
MspI CCGG 3 cut(s) 585, 813, 969
MspR9I CCNGG 4 cut(s) 233, 586, 1062, 1247
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 3 cut(s) 233, 1062, 1247
MvnI CGCG 2 cut(s) 261, 479
MwoI GCNNNNNNNGC 3 cut(s) 14, 360, 369
NciI CCSGG 1 cut(s) 586
NdeII GATC 5 cut(s) 306, 385, 526, 847, 1233
NlaIII CATG 2 cut(s) 194, 277
NlaIV GGNNCC 4 cut(s) 750, 973, 1161, 1244
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 9 cut(s) 98, 332, 531, 686, 693, 767, 794, 944, 1187
OliI CACNNNNGTG 1 cut(s) 803
PasI CCCWGGG 1 cut(s) 1061
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 161, 733
PfeI GAWTC 2 cut(s) 75, 1066
PflFI GACNNNGTC 1 cut(s) 1294
PkrI GCNGC 2 cut(s) 7, 263
PleI GAGTC 9 cut(s) 95, 177, 247, 340, 669, 700, 959, 1101, 1190
PpsI GAGTC 9 cut(s) 95, 177, 247, 340, 669, 700, 959, 1101, 1190
PsiI TTATAA 1 cut(s) 959
Psp6I CCWGG 3 cut(s) 231, 1060, 1245
PspEI GGTNACC 1 cut(s) 767
PspGI CCWGG 3 cut(s) 231, 1060, 1245
PspN4I GGNNCC 4 cut(s) 750, 973, 1161, 1244
PspPI GGNCC 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 1294
RsaI GTAC 3 cut(s) 24, 269, 1051
RsaNI GTAC 3 cut(s) 23, 268, 1050
RseI CAYNNNNRTG 2 cut(s) 633, 803
SacII CCGCGG 2 cut(s) 262, 480
SalI GTCGAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 1281
SatI GCNGC 2 cut(s) 6, 262
Sau3AI GATC 5 cut(s) 306, 385, 526, 847, 1233
Sau96I GGNCC 1 cut(s) 748
SchI GAGTC 9 cut(s) 95, 177, 248, 340, 669, 701, 959, 1102, 1191
ScrFI CCNGG 4 cut(s) 233, 586, 1062, 1247
SduI GDGCHC 2 cut(s) 473, 716
SfaNI GCATC 1 cut(s) 1009
SfcI CTRYAG 1 cut(s) 720
Sfr303I CCGCGG 2 cut(s) 262, 480
SgrBI CCGCGG 2 cut(s) 262, 480
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 633, 803
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
Sse9I AATT 5 cut(s) 90, 731, 909, 1106, 1132
SsiI CCGC 5 cut(s) 259, 261, 477, 479, 1145
SspI AATATT 1 cut(s) 1123
SspMI CTAG 3 cut(s) 572, 989, 1013
StyD4I CCNGG 4 cut(s) 231, 584, 1060, 1245
StyI CCWWGG 1 cut(s) 1320
TaaI ACNGT 8 cut(s) 98, 170, 488, 996, 1090, 1129, 1218, 1294
TaiI ACGT 2 cut(s) 597, 1175
TaqI TCGA 4 cut(s) 181, 396, 963, 1232
TaqII GACCGA 1 cut(s) 167
TasI AATT 5 cut(s) 90, 731, 909, 1106, 1132
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 75, 1066
Tru1I TTAA 1 cut(s) 1281
Tru9I TTAA 1 cut(s) 1281
TscAI CASTG 9 cut(s) 331, 356, 457, 702, 805, 823, 1144, 1192, 1203
TseFI GTSAC 9 cut(s) 98, 332, 531, 686, 693, 767, 794, 944, 1187
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 9 cut(s) 98, 332, 531, 686, 693, 767, 794, 944, 1187
TspDTI ATGAA 1 cut(s) 1045
TspRI CASTG 9 cut(s) 331, 356, 457, 702, 805, 823, 1144, 1192, 1203
Tth111I GACNNNGTC 1 cut(s) 1294
Vha464I CTTAAG 1 cut(s) 1280
VpaK11BI GGWCC 1 cut(s) 748
XagI CCTNNNNNAGG 1 cut(s) 1250
XapI RAATTY 3 cut(s) 731, 909, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmiI GTMKAC 2 cut(s) 181, 413
XmnI GAANNNNTTC 2 cut(s) 161, 733
XspI CTAG 3 cut(s) 572, 989, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.