Rw1G013640

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
30513113 .. 30514439
1327 bp
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UTR
Exon/CDS
Intron
Rw1G013640.1

Sequence Viewer

Length: 1227 bp
ATGGCAGCACTAGCAACAACAGCATTTACACTCTTCCTTCTTTGTGTCTCTGATTTCTCTTCGGCCTCCGCTAAAGGGGGATTCACCATTGACCTAATTCACCATGACTCGCCTCACTCTCCCTTTTACAATTCTTCAGAAACTCCATCCCAAAGCTTGGAGAATGCCTTTCGCCGTTCCATAAGCCGACTCAACCATTTCAGTCCAACAGCTTCCACTTCAGTAGCTCAGCCTAACCAGGCCGAGTCCACTATAACCAACAACAACGGCAATTACCTTATGGAGTTATCAATTGGAACACCCTCATTTTCGATCAAGGTCATCGCCGACATCAGCAGTGACCTCATCTGGATGCAATGCGAGGCTTGTGTTGATTGTTACACGCAAACCGATCCTATTTTTGACCCCTCAAAATCGTGCCCCGCCGAGGGGAGTGGTTCCGGTTCGGCTTGCCAATATAAAGTGAACTACGATGATCAATCACACACAGTCGGAGACATTGCCGTTGACACTCTAACCCTAATTTCCACTACCAGGAATAACGTTTCGTTTCTGAAAACAATAATCGGGTGTGGCCATGACAATGCTGGAACCTTTGACAAAAAAGGGTCTAGTATAGTTGGGCTTGGAGGTGGTGACGAGTCACTCATTACCCAATTGGATACTTCCATAGATGGAAAGTTTTCATATTGCTTGGTCCCTTATGGCTGGGAAGGTAACCAAACAAGCAAGTTGAACTTTGGTGATGATGTTGGGGTTTCTGGCTCTGGCGTTGTGTCCACTCCCATTGTCCAAAATCAAACCCGAAAAACGTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAATACGAAAATTCCCTTCTCATCATCATCTTCAGCCTCTGGTGAGGGCAACATTATAATTGACTCTGGCACCACACTAACCATACTGGGGCAGTTCTCCTACTTGGAGCTAGAAAAAGCAGTTGACAAGGTTGTCGGCGGAGAGCGCGTGAGGGTCCCTCAGATTCCAATATCTCTTTGCTATAAGTCATCCAAGGATTTGAAGGTGCCAAATATTACTGTGCATTTCAGTGGTGCAGATGTGAAGTTGGAGCCAAATAACATCTTTACTACGAGTATTTCGATCTATGGGAACCTAGCCCAGGCGGGATTCTTGGTGGGATATGACCTTAAGAAGAAGACTGTGTCTTTCAAGCCAACTGACTGCACCAAGGTCTAA

Protein Analysis

408

Amino Acids

43.62

Weight (kDa)

5.09

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 91 - 375 6.4e-12 Eukaryotic aspartyl protease
TAXi_N PF14543 92 - 140 1.3e-12 Xylanase inhibitor N-terminal
TAXi_N PF14543 145 - 249 5.3e-23 Xylanase inhibitor N-terminal
TAXi_C PF14541 273 - 373 2.5e-14 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 905
AasI GACNNNNNNGTC 1 cut(s) 980
AccB1I GGYRCC 2 cut(s) 917, 1054
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 846
AccII CGCG 1 cut(s) 996
AciI CCGC 4 cut(s) 69, 423, 987, 1154
AclI AACGTT 2 cut(s) 543, 812
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 1 cut(s) 858
AcuI CTGAAG 3 cut(s) 120, 204, 864
AfiI CCNNNNNNNGG 8 cut(s) 75, 157, 427, 428, 429, 534, 936, 1150
AflII CTTAAG 1 cut(s) 1178
AgsI TTSAA 3 cut(s) 736, 1051, 1201
AjnI CCWGG 3 cut(s) 237, 533, 1149
AluBI AGCT 4 cut(s) 156, 212, 227, 958
AluI AGCT 4 cut(s) 156, 212, 227, 958
Alw26I GTCTC 2 cut(s) 52, 489
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 887
AoxI GGCC 3 cut(s) 63, 240, 574
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 858
Asp700I GAANNNNTTC 1 cut(s) 682
AspLEI GCGC 1 cut(s) 996
AspS9I GGNCC 2 cut(s) 697, 1003
AsuHPI GGTGA 5 cut(s) 76, 92, 647, 755, 902
AvaII GGWCC 2 cut(s) 697, 1003
BaeGI GKGCMC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 576
BanI GGYRCC 2 cut(s) 917, 1054
BbsI GAAGAC 1 cut(s) 1193
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 154, 668
BceAI ACGGC 3 cut(s) 159, 283, 488
BciT130I CCWGG 3 cut(s) 239, 535, 1151
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 52, 489
BfaI CTAG 4 cut(s) 11, 612, 959, 1145
BfrI CTTAAG 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 239, 535, 1151
Bme18I GGWCC 2 cut(s) 697, 1003
BmgT120I GGNCC 2 cut(s) 697, 1003
BmiI GGNNCC 9 cut(s) 439, 592, 699, 919, 1004, 1005, 1056, 1101, 1142
BmrFI CCNGG 3 cut(s) 239, 535, 1151
BmrI ACTGGG 1 cut(s) 944
BmsI GCATC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 944
BpiI GAAGAC 1 cut(s) 1193
BplI GAGNNNNNCTC 2 cut(s) 991, 1023
Bpu1102I GCTNAGC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 426, 1041, 1149, 1218
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 8 cut(s) 75, 157, 427, 428, 429, 534, 936, 1150
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 2 cut(s) 362, 498
BseBI CCWGG 3 cut(s) 239, 535, 1151
BseDI CCNNGG 4 cut(s) 426, 1041, 1149, 1218
BseGI GGATG 3 cut(s) 146, 357, 1037
BseLI CCNNNNNNNGG 8 cut(s) 75, 157, 427, 428, 429, 534, 936, 1150
BseMI GCAATG 2 cut(s) 362, 498
BseMII CTCAG 2 cut(s) 242, 1022
BseNI ACTGG 1 cut(s) 939
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 708
BsgI GTGCAG 2 cut(s) 1104, 1198
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 3 cut(s) 65, 242, 576
BshNI GGYRCC 2 cut(s) 917, 1054
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 2 cut(s) 683, 989
BslI CCNNNNNNNGG 8 cut(s) 75, 157, 427, 428, 429, 534, 936, 1150
BsmAI GTCTC 2 cut(s) 52, 489
BsmFI GGGAC 2 cut(s) 683, 989
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 3 cut(s) 65, 242, 576
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 4 cut(s) 312, 391, 475, 1131
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 4 cut(s) 69, 423, 987, 1154
BspANI GGCC 3 cut(s) 65, 242, 576
BspCNI CTCAG 2 cut(s) 241, 1021
BspFNI CGCG 1 cut(s) 996
BspLI GGNNCC 9 cut(s) 439, 592, 699, 919, 1004, 1005, 1056, 1101, 1142
BspPI GGATC 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 917, 1054
BspTI CTTAAG 1 cut(s) 1178
BsrDI GCAATG 2 cut(s) 362, 498
BsrI ACTGG 1 cut(s) 939
BssECI CCNNGG 4 cut(s) 426, 1041, 1149, 1218
BssMI GATC 4 cut(s) 312, 391, 475, 1131
BssT1I CCWWGG 2 cut(s) 1041, 1218
Bst2UI CCWGG 3 cut(s) 239, 535, 1151
Bst4CI ACNGT 3 cut(s) 490, 1069, 1192
Bst6I CTCTTC 2 cut(s) 38, 64
BstAFI CTTAAG 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 228, 1008
BstEII GGTNACC 1 cut(s) 716
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 3 cut(s) 146, 357, 1037
BstFNI CGCG 1 cut(s) 996
BstHHI GCGC 1 cut(s) 996
BstKTI GATC 4 cut(s) 315, 394, 478, 1134
BstMAI GTCTC 2 cut(s) 52, 489
BstMBI GATC 4 cut(s) 312, 391, 475, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 993
BstNI CCWGG 3 cut(s) 239, 535, 1151
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 237, 533, 1149
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 1193
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 3 cut(s) 65, 242, 576
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 3 cut(s) 146, 357, 1037
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 343, 1084
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 887
CfoI GCGC 1 cut(s) 996
Cfr13I GGNCC 2 cut(s) 697, 1003
CseI GACGC 1 cut(s) 832
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 2 cut(s) 104, 578
DdeI CTNAG 2 cut(s) 228, 1008
DpnI GATC 4 cut(s) 314, 393, 477, 1133
DpnII GATC 4 cut(s) 312, 391, 475, 1131
DrdI GACNNNNNNGTC 1 cut(s) 980
DseDI GACNNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 38, 64
EarI CTCTTC 2 cut(s) 38, 64
EciI GGCGGA 1 cut(s) 1002
Eco130I CCWWGG 2 cut(s) 1041, 1218
Eco47I GGWCC 2 cut(s) 697, 1003
Eco57I CTGAAG 3 cut(s) 120, 204, 864
Eco91I GGTNACC 1 cut(s) 716
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoO109I RGGNCCY 1 cut(s) 1003
EcoO65I GGTNACC 1 cut(s) 716
EcoRII CCWGG 3 cut(s) 237, 533, 1149
EcoT14I CCWWGG 2 cut(s) 1041, 1218
ErhI CCWWGG 2 cut(s) 1041, 1218
FaeI CATG 2 cut(s) 107, 581
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 2 cut(s) 683, 989
FatI CATG 2 cut(s) 103, 577
FauI CCCGC 2 cut(s) 430, 1147
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 133, 364, 1024
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 4 cut(s) 11, 612, 959, 1145
GlaI GCGC 1 cut(s) 995
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 712
HaeIII GGCC 3 cut(s) 65, 242, 576
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 832
HhaI GCGC 1 cut(s) 996
Hin1II CATG 2 cut(s) 107, 581
Hin6I GCGC 1 cut(s) 994
HinP1I GCGC 1 cut(s) 994
HincII GTYRAC 3 cut(s) 508, 847, 973
HindII GTYRAC 3 cut(s) 508, 847, 973
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 8 cut(s) 81, 107, 189, 245, 641, 911, 1012, 1158
HpaII CCGG 1 cut(s) 441
HphI GGTGA 5 cut(s) 76, 92, 647, 755, 902
Hpy166II GTNNAC 6 cut(s) 249, 466, 508, 780, 847, 973
Hpy188I TCNGA 5 cut(s) 52, 139, 494, 555, 1011
Hpy188III TCNNGA 2 cut(s) 349, 823
Hpy8I GTNNAC 6 cut(s) 249, 466, 508, 780, 847, 973
Hpy99I CGWCG 1 cut(s) 848
HpyAV CCTTC 4 cut(s) 47, 707, 874, 1045
HpyCH4III ACNGT 3 cut(s) 490, 1069, 1192
HpyCH4IV ACGT 2 cut(s) 543, 812
HpyCH4V TGCA 4 cut(s) 355, 1072, 1085, 1215
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 993
HpyF3I CTNAG 2 cut(s) 228, 1008
HpySE526I ACGT 2 cut(s) 543, 812
Hsp92II CATG 2 cut(s) 107, 581
HspAI GCGC 1 cut(s) 994
KflI GGGWCCC 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 4 cut(s) 312, 391, 475, 1131
LmnI GCTCC 2 cut(s) 955, 1099
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 342
MaeI CTAG 4 cut(s) 11, 612, 959, 1145
MaeII ACGT 2 cut(s) 543, 812
MaeIII GTNAC 5 cut(s) 338, 377, 635, 642, 716
MalI GATC 4 cut(s) 314, 393, 477, 1133
MboI GATC 4 cut(s) 312, 391, 475, 1131
MboII GAAGA 8 cut(s) 25, 51, 126, 808, 811, 870, 1195, 1198
MfeI CAATTG 2 cut(s) 291, 656
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 8 cut(s) 96, 130, 271, 291, 522, 656, 858, 906
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 5 cut(s) 101, 183, 254, 650, 905
MmeI TCCRAC 3 cut(s) 230, 472, 1077
Mox20I TGGCCA 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 682
MscI TGGCCA 1 cut(s) 576
MseI TTAA 1 cut(s) 1179
MslI CAYNNNNRTG 3 cut(s) 350, 582, 1077
Msp20I TGGCCA 1 cut(s) 576
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 3 cut(s) 239, 535, 1151
MunI CAATTG 2 cut(s) 291, 656
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 3 cut(s) 239, 535, 1151
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 993
NdeII GATC 4 cut(s) 312, 391, 475, 1131
NlaIII CATG 2 cut(s) 107, 581
NlaIV GGNNCC 9 cut(s) 439, 592, 699, 919, 1004, 1005, 1056, 1101, 1142
NmeAIII GCCGAG 2 cut(s) 268, 451
NmuCI GTSAC 3 cut(s) 338, 635, 642
PcsI WCGNNNNNNNCGW 1 cut(s) 1127
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 3 cut(s) 81, 1012, 1158
PflFI GACNNNGTC 1 cut(s) 1192
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 5 cut(s) 101, 183, 253, 649, 905
PpsI GAGTC 5 cut(s) 101, 183, 253, 649, 905
PpuMI RGGWCCY 1 cut(s) 1003
PsiI TTATAA 1 cut(s) 905
Psp1406I AACGTT 2 cut(s) 543, 812
Psp5II RGGWCCY 1 cut(s) 1003
Psp6I CCWGG 3 cut(s) 237, 533, 1149
PspEI GGTNACC 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 3 cut(s) 237, 533, 1149
PspN4I GGNNCC 9 cut(s) 439, 592, 699, 919, 1004, 1005, 1056, 1101, 1142
PspPI GGNCC 2 cut(s) 697, 1003
PspPPI RGGWCCY 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 887
PsyI GACNNNGTC 1 cut(s) 1192
RseI CAYNNNNRTG 3 cut(s) 350, 582, 1077
SalI GTCGAC 1 cut(s) 845
SaqAI TTAA 1 cut(s) 1179
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 312, 391, 475, 1131
Sau96I GGNCC 2 cut(s) 697, 1003
SchI GAGTC 5 cut(s) 101, 183, 254, 650, 905
ScrFI CCNGG 3 cut(s) 239, 535, 1151
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 1 cut(s) 342
SinI GGWCC 2 cut(s) 697, 1003
SmiMI CAYNNNNRTG 3 cut(s) 350, 582, 1077
SmlI CTYRAG 1 cut(s) 1178
SmoI CTYRAG 1 cut(s) 1178
Sse9I AATT 8 cut(s) 96, 130, 271, 291, 522, 656, 858, 906
SsiI CCGC 4 cut(s) 69, 423, 987, 1154
SspI AATATT 1 cut(s) 1063
SspMI CTAG 4 cut(s) 11, 612, 959, 1145
StyD4I CCNGG 3 cut(s) 237, 533, 1149
StyI CCWWGG 2 cut(s) 1041, 1218
TaaI ACNGT 3 cut(s) 490, 1069, 1192
TaiI ACGT 2 cut(s) 546, 815
TaqI TCGA 3 cut(s) 311, 846, 1130
TasI AATT 8 cut(s) 96, 130, 271, 291, 522, 656, 858, 906
TfiI GAWTC 3 cut(s) 81, 1012, 1158
Tru1I TTAA 1 cut(s) 1179
Tru9I TTAA 1 cut(s) 1179
TscAI CASTG 2 cut(s) 343, 1084
TseFI GTSAC 3 cut(s) 338, 635, 642
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 338, 635, 642
TspDTI ATGAA 1 cut(s) 675
TspRI CASTG 2 cut(s) 343, 1084
Tth111I GACNNNGTC 1 cut(s) 1192
Van91I CCANNNNNTGG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 1178
VpaK11BI GGWCC 2 cut(s) 697, 1003
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 4 cut(s) 11, 612, 959, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.