Rh1DG166100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001618
Physical Location & Seq
Forward (+)
33947019 .. 33947459
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG166100.1

Sequence Viewer

Length: 441 bp
ATGAGTGTGGGACGCAAGAAATTGCAATACAACAGTACACTGATGCCAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGTCTACACTAACAATGTTACCAAAGGACTTTTACAATAGGCTGGAATTGACAATGAGTAAGGCCATAAGATCAAAACGATTAAGACACGCTAGTCGCTACTTAAGCCTTTGCTACAAGACCAAATCGGCTATCAAAGCTCCCATAATTACTGCACATTTCACCGGTGCGGCTGTTAAGTTGAAAGCTTCGAACACTTTCATAAGAGTGTCAATGGATGTTGTCTGCTTCGCTTTCAGACCCATCACTCAAGGTAATGCCATCTTTGGCAGTATGGCACAAACGAATTTCTTGATAGGCTATGACCTCAAGAAAGAGTCCATCTCTTTTAAGCCAACTGACTGCAGTAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

10.24

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 1 - 139 2.1e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 89
AciI CCGC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 3 cut(s) 53, 224, 272
AluI AGCT 3 cut(s) 53, 224, 272
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 370
AsiGI ACCGGT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 275
BccI CCATC 3 cut(s) 335, 353, 413
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 427
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 318, 377
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 248
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 248
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 275
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssMI GATC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 275
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 189, 221
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 427
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 248
CviQI GTAC 1 cut(s) 36
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 55
FaiI YATR 6 cut(s) 74, 152, 230, 287, 359, 387
FaqI GGGAC 1 cut(s) 24
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 2 cut(s) 80, 401
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 38, 90
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 376, 394
Hpy8I GTNNAC 2 cut(s) 38, 90
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 25, 239, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 221
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 58, 229
LpnPI CCDG 5 cut(s) 42, 69, 69, 113, 262
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MluCI AATT 5 cut(s) 20, 131, 231, 370, 436
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 5 cut(s) 167, 188, 261, 414, 439
MslI CAYNNNNRTG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 189, 221
NdeII GATC 1 cut(s) 155
NspV TTCGAA 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PstI CTGCAG 1 cut(s) 431
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 5 cut(s) 167, 188, 261, 414, 439
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 55, 226, 274, 340, 393
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 275
SgrAI CRCCGGYG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 187, 333, 392
SmoI CTYRAG 3 cut(s) 187, 333, 392
Sse9I AATT 5 cut(s) 20, 131, 231, 370, 436
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 275
TasI AATT 5 cut(s) 20, 131, 231, 370, 436
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 167, 188, 261, 414, 439
Tru9I TTAA 5 cut(s) 167, 188, 261, 414, 439
TscAI CASTG 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 274
TspRI CASTG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 187
XapI RAATTY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.