MD02G1235000.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001618
Physical Location & Seq
Reverse (-)
28131716 .. 28132021
306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1235000.v1.1.491

Sequence Viewer

Length: 258 bp
ATGATGTTTGGTTGTGGACAAGACAATGGAGGCCTCTTTAACAGAAATGGATCAGGCATGATTGGGCTTGGACGTGGACCGGTGTCCCTCATCTCTCAGATGAGTTCTTCAATCGATGCGAAATTTTCCTCCTGCCTTGTGCATGCTTTTTCAGGATTCAACTCATCAAGCACAATGAGCTTCGGCATTGAAGCTGTGGTTTCCGGCACCACAGCGGTTTCTACCCCATTACTTTCTGGAGGCTCAAAATCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

86

Amino Acids

8.53

Weight (kDa)

7.84

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 62 9.5e-13 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 3 cut(s) 111, 160, 191
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 2 cut(s) 180, 194
AluI AGCT 2 cut(s) 180, 194
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 208
BmsI GCATC 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 114
BseMII CTCAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 114
BsiSI CCGG 2 cut(s) 80, 204
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 146
BstPAI GACNNNNGTC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 114
BtrI CACGTC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 114
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 2 cut(s) 58, 143
CviJI RGCY 5 cut(s) 33, 67, 180, 194, 243
CviKI_1 RGCY 5 cut(s) 33, 67, 180, 194, 243
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 77
FaeI CATG 2 cut(s) 61, 146
FaiI YATR 3 cut(s) 59, 144, 256
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 57, 142
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 80, 204
Hin1II CATG 2 cut(s) 61, 146
HinfI GANTC 1 cut(s) 156
HpaII CCGG 2 cut(s) 80, 204
Hpy166II GTNNAC 2 cut(s) 17, 77
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 153, 237
Hpy8I GTNNAC 2 cut(s) 17, 77
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 2 cut(s) 61, 146
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 39, 93, 138, 145, 217, 222
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 73
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 99
MluCI AATT 1 cut(s) 122
MnlI CCTC 5 cut(s) 23, 44, 98, 139, 233
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 80, 204
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 1 cut(s) 50
NlaIII CATG 2 cut(s) 61, 146
NlaIV GGNNCC 1 cut(s) 208
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PceI AGGCCT 1 cut(s) 33
PfeI GAWTC 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 1 cut(s) 77
SetI ASST 3 cut(s) 76, 182, 196
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 77
SphI GCATGC 1 cut(s) 146
Sse9I AATT 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 215
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 122
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.