Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

34636591 .. 34637446

Gene Structure 856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCTTGCAGCAGCTGTTACAAGCAAAAATCTCCGCTCTTTGAACCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTCTTGCTCAGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCCTACAGCAATGGAATTGTATCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTGCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCAATGTCCCTTATCTCCCAAATGGATTCTTCAATTGATGGGAACTTATCCTACTGCCTTGTTCCAGCTTTTTCACCACTCAACTCTTCAAGCAAAATGAGCTTTGGTAATAATGCTGTGGTTTCTGGTGCCATGGTGGTTTCTACCCCATTACTTTCAGGAGACCTAAAATCTTTCTATTTCGTAAAGCTGGAAGCAATGAGTGTGGGACGCAAGAAATTGCAATACAACAGTACACTGATGCCAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTTTTACAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

215

Amino Acids

23.08

Weight (kDa)

8.39

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	3 - 144	2.6e-33	Xylanase inhibitor N-terminal
TAXi_C	PF14541	167 - 214	1.7e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	156, 301, 328
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	44, 205, 354, 411
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	6 cut(s)	15, 216, 389, 423, 511, 572
AluI	AGCT	6 cut(s)	15, 216, 389, 423, 511, 572
Alw26I	GTCTC	2 cut(s)	185, 477
AlwI	GGATC	3 cut(s)	156, 301, 328
AlwNI	CAGNNNCTG	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	9, 12
ApoI	RAATTY	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	21, 24
BccI	CCATC	2 cut(s)	284, 353
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	185, 477
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	2 cut(s)	151, 166
BisI	GCNGC	2 cut(s)	10, 13
BlsI	GCNGC	2 cut(s)	11, 14
Bme1390I	CCNGG	1 cut(s)	576
BmgBI	CACGTC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	112, 451
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse3DI	GCAATG	2 cut(s)	178, 525
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	2 cut(s)	178, 525
BseMII	CTCAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	21, 24
BshNI	GGYRCC	1 cut(s)	449
BslFI	GGGAC	3 cut(s)	313, 543, 619
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	2 cut(s)	185, 477
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	3 cut(s)	313, 543, 619
Bso31I	GGTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	161, 195, 293, 320
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	112, 451
BspPI	GGATC	3 cut(s)	156, 301, 328
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	477
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	178, 525
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	4 cut(s)	161, 195, 293, 320
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	229, 272, 554
Bst6I	CTCTTC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	121, 217
BstDSI	CCRYGG	1 cut(s)	453
BstKTI	GATC	4 cut(s)	164, 198, 296, 323
BstMAI	GTCTC	2 cut(s)	185, 477
BstMBI	GATC	4 cut(s)	161, 195, 293, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	151, 166
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	21, 24
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	277, 557
CaiI	CAGNNNCTG	1 cut(s)	15
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	555
CspCI	CAANNNNNGTGG	4 cut(s)	253, 288, 507, 542
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	6 cut(s)	15, 216, 389, 423, 511, 572
CviKI_1	RGCY	6 cut(s)	15, 216, 389, 423, 511, 572
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	2 cut(s)	121, 217
DpnI	GATC	4 cut(s)	163, 197, 295, 322
DpnII	GATC	4 cut(s)	161, 195, 293, 320
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	153, 248, 455, 593
FaqI	GGGAC	3 cut(s)	313, 543, 619
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	10, 13
Fsp4HI	GCNGC	2 cut(s)	10, 13
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	10, 13
GsuI	CTGGAG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	2 cut(s)	347, 599
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	2 cut(s)	275, 557
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	2 cut(s)	275, 557
HpyAV	CCTTC	1 cut(s)	573
HpyCH4III	ACNGT	3 cut(s)	229, 272, 554
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	9, 233, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	2 cut(s)	121, 217
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	161, 195, 293, 320
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	9 cut(s)	145, 282, 399, 432, 465, 497, 561, 588, 588
Lsp1109I	GCAGC	2 cut(s)	21, 24
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	17, 134, 621
MalI	GATC	4 cut(s)	163, 197, 295, 322
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	4 cut(s)	161, 195, 293, 320
MboII	GAAGA	5 cut(s)	61, 137, 299, 342, 399
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	52, 177, 249, 354, 539
MnlI	CCTC	2 cut(s)	94, 124
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	4 cut(s)	161, 195, 293, 320
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	112, 451
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	347, 599
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	11, 14
PsiI	TTATAA	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	112, 451
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	10, 13
Sau3AI	GATC	4 cut(s)	161, 195, 293, 320
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	2 cut(s)	151, 166
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	5 cut(s)	52, 177, 249, 354, 539
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	229, 272, 554
TaiI	ACGT	1 cut(s)	319
TasI	AATT	5 cut(s)	52, 177, 249, 354, 539
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	347, 599
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	277, 564
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	9, 12
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	277, 564
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.