Rh1BG128500

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
21682641 .. 21690685
8045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG128500.1

Sequence Viewer

Length: 1236 bp
ATGGAAATTGAATTTGGAGGCTTCACCGTGGACCTGATTCACCGTGACTCACCTCGCTCTCCCTTCTACAACCCTTCAGAAACTCCATCCCAACGCTTGAAGAATTCCTTTCACCGTTCCTTCGGCCGACTCAGCCATTTAAAACCAACAGCTTACTCTTCGGTAGCTCAGCCTAACCAGGCTGAGTCCACTTTAATCAGCAACCGCGGCGAGTACCTCTTGGAGTTGTCAATCGGAACACCTCCATTTTCGATCAAGGCCATCGTAGACACTGGCAGTGACCTCATTTGGACGCAGTGCGAGCCTTGTGTTAATTGCTACACGCAAACTGATCCTATTTTCGACCCCTCAAAATCATCTACTTACAAAACCATTCATTGCTCTTCAAACCAATGCACTGAGCTAAAAGGCAGGTGCCCCGCCAAGGGGAGTGGTTCGGGTTCGGCTTGCCAATACGAAGTGGACTATGGTATTCAGTACACAATCGGAAACCTTGCCGTGGATACTCTAACCCTAGCTTCCACTACCGGGAGAAACGTTTCGTTCCCGAAAACCATAATCGGGTGTGGCCACAACAATACTGGAACCTTTGACAAAAAAGAGTCTGGCATAGTTGGGCTTGGAGGTGGCGACGAGTCACTTATTACCCAATTGGGTAACCAAACAAGCAAGTTGAACTTTGGTGACAATGTTGTGGTTTCCGGCTCTGGCGTTGTGTCCACTCCCATTGTCGAATACCCAACCCAAAAAACCTTCTTCTTCTTGACATTGAAGGCTATCAGCGTTGGCAAAGTGAAAGTTCCCTACTCATCATCATCTTCAGCATCTAGTAAGGGCAACATTATAATCGACTCCGGCACCACGCTAACCCTACTGGAGCCATCTTTCTACTCGAAACTAGAAAAAGTAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAACGACTCTGACATTGGAATACCCCTTTGCTATAAGGTGAGTCAATCCAAGTATTTGAAGTTGCCAAATATTACTGTGCATTTCAGTGGCGGGAATGTGAAGTTGAAGCCAAATAACACCTTTATTAGGGTGAGCGACGAGGCTTTGTGCTTTGCCTTTGCTCCGGCGGTTTTGGTTCCTTCGCTCTATGGGAACGTGGCCCAGGCAGATTTCTTGGTGGGATATGACGTTAAGAAGAAGACTGTATCCTTCAAGCCAACTGATTGCACCAAGTTGGTTCTTGTATTAGTGCTTTAA

Protein Analysis

411

Amino Acids

44.29

Weight (kDa)

8.37

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 71 - 124 1.2e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 72 - 222 1.6e-47 Xylanase inhibitor N-terminal
Asp PF00026 220 - 397 1.1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 253 - 398 1.2e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AarI CACCTGC 1 cut(s) 402
AasI GACNNNNNNGTC 1 cut(s) 920
Acc36I ACCTGC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 414, 857
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 207, 936
AciI CCGC 6 cut(s) 205, 207, 420, 927, 1029, 1106
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 2 cut(s) 124, 568
AcsI RAATTY 2 cut(s) 11, 103
AcuI CTGAAG 2 cut(s) 60, 804
AfaI GTAC 2 cut(s) 215, 479
AfiI CCNNNNNNNGG 7 cut(s) 424, 425, 426, 499, 528, 561, 1065
AgsI TTSAA 8 cut(s) 11, 100, 387, 676, 772, 997, 1045, 1192
AjnI CCWGG 2 cut(s) 177, 1140
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 4 cut(s) 152, 167, 403, 518
AluI AGCT 4 cut(s) 152, 167, 403, 518
AlwI GGATC 1 cut(s) 326
AoxI GGCC 4 cut(s) 124, 258, 568, 1137
ApoI RAATTY 2 cut(s) 11, 103
Asp700I GAANNNNTTC 1 cut(s) 538
AspLEI GCGC 1 cut(s) 936
AspS9I GGNCC 2 cut(s) 31, 1138
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 7 cut(s) 16, 32, 42, 104, 695, 988, 1081
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 419
BalI TGGCCA 1 cut(s) 570
BanI GGYRCC 2 cut(s) 414, 857
BbsI GAAGAC 1 cut(s) 1184
BccI CCATC 3 cut(s) 94, 269, 889
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 179, 1142
BciVI GTATCC 2 cut(s) 496, 1195
BcnI CCSGG 1 cut(s) 529
BfaI CTAG 3 cut(s) 515, 828, 899
BfuAI ACCTGC 1 cut(s) 402
BfuI GTATCC 2 cut(s) 496, 1195
BisI GCNGC 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 3 cut(s) 179, 529, 1142
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 1138
BmiI GGNNCC 5 cut(s) 416, 586, 859, 879, 1116
BmrFI CCNGG 3 cut(s) 179, 529, 1142
BmsI GCATC 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 1184
BpmI CTGGAG 1 cut(s) 896
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 529
BsaJI CCNNGG 5 cut(s) 27, 205, 423, 498, 1140
Bsc4I CCNNNNNNNGG 7 cut(s) 424, 425, 426, 499, 528, 561, 1065
Bse1I ACTGG 3 cut(s) 277, 586, 879
Bse3DI GCAATG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 179, 1142
BseDI CCNNGG 5 cut(s) 27, 205, 423, 498, 1140
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 7 cut(s) 424, 425, 426, 499, 528, 561, 1065
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 4 cut(s) 145, 174, 182, 390
BseNI ACTGG 3 cut(s) 277, 586, 879
BseSI GKGCMC 1 cut(s) 419
BseX3I CGGCCG 1 cut(s) 124
Bsh1236I CGCG 2 cut(s) 207, 936
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 126, 260, 570, 1139
BshNI GGYRCC 2 cut(s) 414, 857
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 4 cut(s) 528, 702, 855, 1103
BslI CCNNNNNNNGG 7 cut(s) 424, 425, 426, 499, 528, 561, 1065
BsnI GGCC 4 cut(s) 126, 260, 570, 1139
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 252, 331
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 6 cut(s) 205, 207, 420, 927, 1029, 1106
BspANI GGCC 4 cut(s) 126, 260, 570, 1139
BspCNI CTCAG 4 cut(s) 144, 175, 181, 391
BspFNI CGCG 2 cut(s) 207, 936
BspLI GGNNCC 5 cut(s) 416, 586, 859, 879, 1116
BspMI ACCTGC 1 cut(s) 402
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 1 cut(s) 388
BspT107I GGYRCC 2 cut(s) 414, 857
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 3 cut(s) 277, 586, 879
BssECI CCNNGG 5 cut(s) 27, 205, 423, 498, 1140
BssMI GATC 2 cut(s) 252, 331
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 179, 1142
Bst4CI ACNGT 5 cut(s) 28, 44, 116, 1015, 1183
Bst6I CTCTTC 2 cut(s) 163, 388
BstC8I GCNNGC 2 cut(s) 302, 448
BstDEI CTNAG 4 cut(s) 131, 168, 183, 399
BstDSI CCRYGG 3 cut(s) 27, 205, 498
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 1 cut(s) 1063
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 207, 936
BstHHI GCGC 1 cut(s) 936
BstKTI GATC 2 cut(s) 255, 334
BstMBI GATC 2 cut(s) 252, 331
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 132, 207, 301, 933
BstNI CCWGG 2 cut(s) 179, 1142
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 3 cut(s) 177, 527, 1140
BstSLI GKGCMC 1 cut(s) 419
BstUI CGCG 2 cut(s) 207, 936
BstV2I GAAGAC 1 cut(s) 1184
BstZI CGGCCG 1 cut(s) 124
BsuI GTATCC 2 cut(s) 496, 1195
BsuRI GGCC 4 cut(s) 126, 260, 570, 1139
BtgI CCRYGG 3 cut(s) 27, 205, 498
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 2 cut(s) 283, 302
BtsIMutI CAGTG 5 cut(s) 270, 283, 302, 396, 1030
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 302, 448
CfoI GCGC 1 cut(s) 936
Cfr13I GGNCC 2 cut(s) 31, 1138
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 214, 478
CspCI CAANNNNNGTGG 4 cut(s) 412, 447, 709, 744
CviQI GTAC 2 cut(s) 214, 478
DdeI CTNAG 4 cut(s) 131, 168, 183, 399
DpnI GATC 2 cut(s) 254, 333
DpnII GATC 2 cut(s) 252, 331
DraI TTTAAA 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
EaeI YGGCCR 2 cut(s) 124, 568
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 163, 388
EarI CTCTTC 2 cut(s) 163, 388
EclXI CGGCCG 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 60, 804
Eco91I GGTNACC 1 cut(s) 656
EcoNI CCTNNNNNAGG 1 cut(s) 1063
EcoO65I GGTNACC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 177, 1140
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaiI YATR 7 cut(s) 468, 557, 611, 845, 972, 1128, 1164
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 662, 694
FauI CCCGC 3 cut(s) 427, 920, 1022
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 3 cut(s) 515, 828, 899
GlaI GCGC 1 cut(s) 935
GluI GCNGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 896
HaeIII GGCC 4 cut(s) 126, 260, 570, 1139
HapII CCGG 4 cut(s) 528, 702, 855, 1103
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 936
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 9 cut(s) 37, 47, 129, 185, 602, 635, 851, 944, 979
HpaII CCGG 4 cut(s) 528, 702, 855, 1103
HphI GGTGA 7 cut(s) 16, 32, 42, 104, 695, 988, 1081
Hpy166II GTNNAC 8 cut(s) 31, 189, 268, 463, 480, 720, 913, 940
Hpy188I TCNGA 4 cut(s) 79, 236, 488, 949
Hpy188III TCNNGA 2 cut(s) 547, 763
Hpy8I GTNNAC 8 cut(s) 31, 189, 268, 463, 480, 720, 913, 940
Hpy99I CGWCG 2 cut(s) 635, 1079
HpyAV CCTTC 7 cut(s) 73, 84, 130, 763, 766, 1128, 1198
HpyCH4III ACNGT 5 cut(s) 28, 44, 116, 1015, 1183
HpyCH4IV ACGT 3 cut(s) 537, 1134, 1167
HpyCH4V TGCA 3 cut(s) 396, 1018, 1206
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 207, 301, 933
HpyF3I CTNAG 4 cut(s) 131, 168, 183, 399
HpySE526I ACGT 3 cut(s) 537, 1134, 1167
HspAI GCGC 1 cut(s) 934
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 252, 331
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 3 cut(s) 877, 931, 1105
LweI GCATC 1 cut(s) 833
MaeI CTAG 3 cut(s) 515, 828, 899
MaeII ACGT 3 cut(s) 537, 1134, 1167
MaeIII GTNAC 5 cut(s) 44, 278, 636, 656, 683
MalI GATC 2 cut(s) 254, 333
MboI GATC 2 cut(s) 252, 331
MboII GAAGA 8 cut(s) 112, 150, 375, 748, 751, 810, 1186, 1189
MfeI CAATTG 1 cut(s) 650
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 570
MluCI AATT 5 cut(s) 6, 11, 103, 313, 650
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 8 cut(s) 41, 123, 194, 611, 644, 845, 938, 988
MnlI CCTC 8 cut(s) 11, 63, 227, 252, 293, 358, 617, 1072
Mox20I TGGCCA 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 538
MscI TGGCCA 1 cut(s) 570
MseI TTAA 5 cut(s) 140, 194, 312, 1170, 1234
MslI CAYNNNNRTG 1 cut(s) 1023
Msp20I TGGCCA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 4 cut(s) 528, 702, 855, 1103
MspR9I CCNGG 3 cut(s) 179, 529, 1142
MunI CAATTG 1 cut(s) 650
MvaI CCWGG 2 cut(s) 179, 1142
MvnI CGCG 2 cut(s) 207, 936
MwoI GCNNNNNNNGC 4 cut(s) 132, 207, 301, 933
NciI CCSGG 1 cut(s) 529
NdeII GATC 2 cut(s) 252, 331
NlaIV GGNNCC 5 cut(s) 416, 586, 859, 879, 1116
NmuCI GTSAC 4 cut(s) 44, 278, 636, 683
PaqCI CACCTGC 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 8 cut(s) 41, 123, 193, 610, 643, 845, 938, 987
PpsI GAGTC 8 cut(s) 41, 123, 193, 610, 643, 845, 938, 987
PsiI TTATAA 1 cut(s) 845
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 177, 1140
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 2 cut(s) 177, 1140
PspN4I GGNNCC 5 cut(s) 416, 586, 859, 879, 1116
PspPI GGNCC 2 cut(s) 31, 1138
RsaI GTAC 2 cut(s) 215, 479
RsaNI GTAC 2 cut(s) 214, 478
RseI CAYNNNNRTG 1 cut(s) 1023
SacII CCGCGG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 5 cut(s) 140, 194, 312, 1170, 1234
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 252, 331
Sau96I GGNCC 2 cut(s) 31, 1138
SchI GAGTC 8 cut(s) 41, 123, 194, 611, 644, 845, 938, 988
ScrFI CCNGG 3 cut(s) 179, 529, 1142
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 1 cut(s) 833
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 1023
Sse9I AATT 5 cut(s) 6, 11, 103, 313, 650
SsiI CCGC 6 cut(s) 205, 207, 420, 927, 1029, 1106
SspI AATATT 1 cut(s) 1009
SspMI CTAG 3 cut(s) 515, 828, 899
StyD4I CCNGG 3 cut(s) 177, 527, 1140
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 5 cut(s) 28, 44, 116, 1015, 1183
TaiI ACGT 3 cut(s) 540, 1137, 1170
TaqI TCGA 5 cut(s) 251, 342, 732, 849, 893
TasI AATT 5 cut(s) 6, 11, 103, 313, 650
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 5 cut(s) 140, 194, 312, 1170, 1234
Tru9I TTAA 5 cut(s) 140, 194, 312, 1170, 1234
TscAI CASTG 5 cut(s) 277, 283, 302, 403, 1030
TseFI GTSAC 4 cut(s) 44, 278, 636, 683
Tsp45I GTSAC 4 cut(s) 44, 278, 636, 683
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 5 cut(s) 277, 283, 302, 403, 1030
VpaK11BI GGWCC 1 cut(s) 31
XagI CCTNNNNNAGG 1 cut(s) 1063
XapI RAATTY 2 cut(s) 11, 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 3 cut(s) 515, 828, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.