Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

8152875 .. 8153462

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1073600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTTGGCCTTGGACGTGGATCGGAGTCTCTCATCTCCCGAATGGGTTCTTCGATTGATGGAAAGTTCTCTTACTGCCTGGCGGACGAAACAAAACCTAACACAACTAGCAAAATGAACTTTGGCAGCTCAGGTATAGTTTCTGGTTTTGGAACGTTATCTAACCCATTGTTTTTAGGAGAACCGAAATCTTACTACTGCGTAAGACTGGAGGCAATGAGCCTGGGACGCACGAGATTGCAAAACAACACCACTTCGAGCTTTCTCGTTAGATGCTTCACTGGGACAAGGCGCATGCAATGTTATCATCGGCTCCAAGACTACAATGACATTTTACCAGAAGACTTCTACAATAAGTTGGAATCGACCGTGAGTAAGGCCATAAAACTAAAACGTTTAACCGGCGAGTTCCTCAACCTAGGGCTTTGCTACAACACAACATCCGTTATCAAAGCTCCAATAATCACTGTGCATTTTAATCAAGAAAATATCAAGTTAAAAGCTTTGAATACCTTCATGAGAATGTCTATGGATGTCGTTTGCTTTGCTTTCGCAACGAGTCGGTTAAACATTTTCATATTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

196

Amino Acids

22.01

Weight (kDa)

9.41

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 43	1.7e-07	Xylanase inhibitor N-terminal
TAXi_C	PF14541	66 - 187	5.5e-10	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	2 cut(s)	155, 394
AclWI	GGATC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	78, 222
AluBI	AGCT	4 cut(s)	129, 261, 455, 503
AluI	AGCT	4 cut(s)	129, 261, 455, 503
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	7, 378
ApeKI	GCWGC	1 cut(s)	126
Asp700I	GAANNNNTTC	2 cut(s)	46, 512
AspA2I	CCTAGG	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	294
AvrII	CCTAGG	1 cut(s)	418
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	80, 224
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	108, 419
BisI	GCNGC	1 cut(s)	127
BlnI	CCTAGG	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	80, 224
BmgBI	CACGTC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	2 cut(s)	80, 224
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	10, 223, 418
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	213, 286
Bse3DI	GCAATG	2 cut(s)	222, 305
BseBI	CCWGG	2 cut(s)	80, 224
BseDI	CCNNGG	3 cut(s)	10, 223, 418
BseGI	GGATG	2 cut(s)	440, 538
BseMI	GCAATG	2 cut(s)	222, 305
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	213, 286
BseXI	GCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	9, 380
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	240, 298
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	240, 298
BsnI	GGCC	2 cut(s)	9, 380
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	9, 380
BspCNI	CTCAG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	222, 305
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	213, 286
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	10, 223, 418
BssMI	GATC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	10, 418
Bst2BI	CACGAG	1 cut(s)	232
Bst2UI	CCWGG	2 cut(s)	80, 224
Bst4CI	ACNGT	2 cut(s)	370, 469
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	440, 538
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	2 cut(s)	80, 224
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	78, 222
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	9, 380
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	440, 538
BtsIMutI	CAGTG	2 cut(s)	279, 465
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	401
CseI	GACGC	1 cut(s)	237
CviAII	CATG	2 cut(s)	295, 517
CviJI	RGCY	9 cut(s)	9, 129, 222, 261, 313, 380, 424, 455, 503
CviKI_1	RGCY	9 cut(s)	9, 129, 222, 261, 313, 380, 424, 455, 503
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	10, 418
EcoRII	CCWGG	2 cut(s)	78, 222
EcoT14I	CCWWGG	2 cut(s)	10, 418
ErhI	CCWWGG	2 cut(s)	10, 418
FaeI	CATG	2 cut(s)	298, 520
FaiI	YATR	6 cut(s)	137, 296, 383, 518, 530, 578
FaqI	GGGAC	2 cut(s)	240, 298
FatI	CATG	2 cut(s)	294, 516
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	2 cut(s)	427, 545
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	108, 419
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	9, 380
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	298, 520
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	26, 362, 559
HpaII	CCGG	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	39, 482, 517
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	2 cut(s)	370, 469
HpyCH4IV	ACGT	3 cut(s)	16, 155, 394
HpyCH4V	TGCA	3 cut(s)	241, 298, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	3 cut(s)	16, 155, 394
Hsp92II	CATG	2 cut(s)	298, 520
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	318, 460
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	108, 419
MaeII	ACGT	3 cut(s)	16, 155, 394
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	42, 353
MlyI	GAGTC	2 cut(s)	35, 568
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	205, 422
MroXI	GAANNNNTTC	2 cut(s)	46, 512
MseI	TTAA	4 cut(s)	398, 477, 497, 566
MslI	CAYNNNNRTG	1 cut(s)	521
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	80, 224
MvaI	CCWGG	2 cut(s)	80, 224
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	298, 520
NlaIV	GGNNCC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	46, 512
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	2 cut(s)	34, 567
PpsI	GAGTC	2 cut(s)	34, 567
Psp1406I	AACGTT	2 cut(s)	155, 394
Psp6I	CCWGG	2 cut(s)	78, 222
PspGI	CCWGG	2 cut(s)	78, 222
PspN4I	GGNNCC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	398, 477, 497, 566
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	35, 568
ScrFI	CCNGG	2 cut(s)	80, 224
SfaNI	GCATC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	298
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	108, 419
StyD4I	CCNGG	2 cut(s)	78, 222
StyI	CCWWGG	2 cut(s)	10, 418
TaaI	ACNGT	2 cut(s)	370, 469
TaiI	ACGT	3 cut(s)	19, 158, 397
TaqI	TCGA	3 cut(s)	53, 257, 365
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	398, 477, 497, 566
Tru9I	TTAA	4 cut(s)	398, 477, 497, 566
TscAI	CASTG	2 cut(s)	286, 472
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	131, 505, 565
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	2 cut(s)	286, 472
XceI	RCATGY	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	418
XmnI	GAANNNNTTC	2 cut(s)	46, 512
XspI	CTAG	2 cut(s)	108, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.