Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

33251276 .. 33252252

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 733 bp

ATGTGCTATATTCCTATGTCTATAGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGCAAATATCAATTGGCACTCCTCCCGTAGAAATCGCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCATGCCTTGCAGCAGCTGTTACAAGCAAAAAGCTCTGCTCTTTGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAAAGATACCTGCAGCAATGGAATTGTATCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTAAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCGATGTCCCTTATCTCCCAAATGGATTCTTCAATTGATGGGAAATTCTCCTATTGCCTTGTTCCAGCTTTTTCACCACTTAACTCTTCAAGCAAAATGAGCTTTGGTAATAATGCTGTAGTTTCTGGTGCCATGGTGGTTTCTACCCCATTACTTTCAGGAGACCTAAAATCTTTCTATTTCGTAAAGCTGGAAGCAATGAGTGTGGGACGCAAGAGATTCCAATACAACAGTACACTGATGCCAATAGTTCCAGGAAGGGGAAACATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTGTTACAATAGGCTGGAATTGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

244

Amino Acids

26.06

Weight (kDa)

5.82

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	18 - 240	4.4e-13	Eukaryotic aspartyl protease
TAXi_N	PF14543	19 - 78	1.2e-17	Xylanase inhibitor N-terminal
TAXi_N	PF14543	78 - 168	8.9e-21	Xylanase inhibitor N-terminal
TAXi_C	PF14541	191 - 241	3e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	521
AclWI	GGATC	3 cut(s)	179, 373, 400
AcsI	RAATTY	2 cut(s)	193, 437
AfaI	GTAC	2 cut(s)	56, 628
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	4 cut(s)	137, 277, 426, 483
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	7 cut(s)	116, 156, 173, 288, 461, 495, 583
AluI	AGCT	7 cut(s)	116, 156, 173, 288, 461, 495, 583
Alw26I	GTCTC	2 cut(s)	257, 549
AlwI	GGATC	3 cut(s)	179, 373, 400
AlwNI	CAGNNNCTG	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	150, 153, 240
ApoI	RAATTY	2 cut(s)	193, 437
AsuHPI	GGTGA	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BanI	GGYRCC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	162, 165, 252
BccI	CCATC	2 cut(s)	356, 425
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	257, 549
BfaI	CTAG	2 cut(s)	117, 285
BfmI	CTRYAG	3 cut(s)	21, 238, 510
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	151, 154, 241
BlsI	GCNGC	3 cut(s)	152, 155, 242
Bme1390I	CCNGG	1 cut(s)	648
BmgBI	CACGTC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse3DI	GCAATG	2 cut(s)	250, 597
BseBI	CCWGG	1 cut(s)	648
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	2 cut(s)	250, 597
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	162, 165, 252
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	395
BslFI	GGGAC	3 cut(s)	385, 615, 691
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	257, 549
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	385, 615, 691
Bso31I	GGTCTC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	121, 184, 267, 365, 392
Bsp19I	CCATGG	1 cut(s)	525
BspDI	ATCGAT	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	3 cut(s)	179, 373, 400
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	549
BsrDI	GCAATG	2 cut(s)	250, 597
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	5 cut(s)	121, 184, 267, 365, 392
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	5 cut(s)	301, 344, 626, 707, 730
Bst6I	CTCTTC	1 cut(s)	484
BstAPI	GCANNNNNTGC	2 cut(s)	104, 147
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	289
BstDSI	CCRYGG	1 cut(s)	525
BstKTI	GATC	5 cut(s)	124, 187, 270, 368, 395
BstMAI	GTCTC	2 cut(s)	257, 549
BstMBI	GATC	5 cut(s)	121, 184, 267, 365, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 113, 147, 492
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	3 cut(s)	21, 238, 510
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	162, 165, 252
Bsu15I	ATCGAT	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	349, 629
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	395
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	55, 627
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 579, 614
CviAII	CATG	4 cut(s)	61, 129, 142, 526
CviJI	RGCY	8 cut(s)	116, 156, 173, 288, 461, 495, 583, 718
CviKI_1	RGCY	8 cut(s)	116, 156, 173, 288, 461, 495, 583, 718
CviQI	GTAC	2 cut(s)	55, 627
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	5 cut(s)	123, 186, 269, 367, 394
DpnII	GATC	5 cut(s)	121, 184, 267, 365, 392
DraI	TTTAAA	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	64, 132, 145, 529
FaiI	YATR	9 cut(s)	9, 17, 23, 62, 130, 143, 320, 527, 665
FaqI	GGGAC	3 cut(s)	385, 615, 691
FatI	CATG	4 cut(s)	60, 128, 141, 525
Fnu4HI	GCNGC	3 cut(s)	151, 154, 241
Fsp4HI	GCNGC	3 cut(s)	151, 154, 241
FspBI	CTAG	2 cut(s)	117, 285
GluI	GCNGC	3 cut(s)	151, 154, 241
HgaI	GACGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	64, 132, 145, 529
HinfI	GANTC	5 cut(s)	26, 133, 419, 612, 671
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	2 cut(s)	347, 629
Hpy188I	TCNGA	2 cut(s)	43, 189
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	2 cut(s)	347, 629
HpyAV	CCTTC	1 cut(s)	645
HpyCH4III	ACNGT	5 cut(s)	301, 344, 626, 707, 730
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	64, 107, 141, 150, 240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 113, 147, 492
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	64, 132, 145, 529
Kzo9I	GATC	5 cut(s)	121, 184, 267, 365, 392
Lsp1109I	GCAGC	3 cut(s)	162, 165, 252
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	117, 285
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	3 cut(s)	158, 693, 707
MalI	GATC	5 cut(s)	123, 186, 269, 367, 394
MboI	GATC	5 cut(s)	121, 184, 267, 365, 392
MboII	GAAGA	4 cut(s)	202, 371, 414, 471
MfeI	CAATTG	2 cut(s)	72, 426
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	7 cut(s)	72, 193, 249, 321, 426, 437, 722
MnlI	CCTC	3 cut(s)	68, 93, 235
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	2 cut(s)	353, 474
MspA1I	CMGCKG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	648
MunI	CAATTG	2 cut(s)	72, 426
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	4 cut(s)	104, 113, 147, 492
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	5 cut(s)	121, 184, 267, 365, 392
NlaIII	CATG	4 cut(s)	64, 132, 145, 529
NlaIV	GGNNCC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PfeI	GAWTC	5 cut(s)	26, 133, 419, 612, 671
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	152, 155, 242
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	56, 628
RsaNI	GTAC	2 cut(s)	55, 627
SaqAI	TTAA	2 cut(s)	353, 474
SatI	GCNGC	3 cut(s)	151, 154, 241
Sau3AI	GATC	5 cut(s)	121, 184, 267, 365, 392
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	3 cut(s)	21, 238, 510
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	7 cut(s)	72, 193, 249, 321, 426, 437, 722
SspMI	CTAG	2 cut(s)	117, 285
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	5 cut(s)	301, 344, 626, 707, 730
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	395
TasI	AATT	7 cut(s)	72, 193, 249, 321, 426, 437, 722
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	5 cut(s)	26, 133, 419, 612, 671
Tru1I	TTAA	2 cut(s)	353, 474
Tru9I	TTAA	2 cut(s)	353, 474
TscAI	CASTG	2 cut(s)	349, 636
TseI	GCWGC	3 cut(s)	150, 153, 240
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	349, 636
XapI	RAATTY	2 cut(s)	193, 437
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	2 cut(s)	117, 285
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.