MD02G1235700.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001618
Physical Location & Seq
Reverse (-)
28200152 .. 28201955
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1235700.v1.1.491

Sequence Viewer

Length: 732 bp
ATGATGTTTGGTTGTGGACAAGACAATGGAGGCCTCTTTAACAGAAATGGATCAGGCATGATTGGGCTTGGACGTGGACCGGTGTCCCTCATCTCTCAGATGAGTTCTTCAATCGATGGGAAATTTTCCTCCTGCCTTGTGCATGCTTTTTCAGGATTTAACTCATCAAGCACAATGAGCTTCGGCATTGAAGCTGTGGTTTCCGGCACCACAGCGGTTTCTACCCATTACTTTCTGGAGGCTCAAAATCTTTATAGTATTGATAGAGATTTTACCACTTGTAAAACAAAGTCCTGCGCTTATTCTTTCCTGCTTGCTGTCCGTCTCTCTCTATTTCTGCTCCCCCGTGCGCCCTCCCTTCTGTGCTTCTCCTTTCTTCTCTTTATTTTCCGTTTTTCCACTTCGTCCGCTCCCCTCTCACTTGCTTTCTTTCATTTTTTAATTCTTTTCCCTTTTCTTTTCTGCTGTGCTCTCTCCTTTCCCGCTGTCTGCTCACTCTCTCCTTCATTATTCTATATGTCCTTGTGCCATCCTCTCTGTCTGCCAGCGTCTTTCCCCTTTCTTCCTTTTAATTCTTTCTTTTCCGCCAGCCCATGTACCTTTTTCTTCTTTTATTCCTTCCGCACTGCCTCAGTGCTCTCTCCCTTCTGCCTATTTTATTTATTTTCTTTTCTTTCCGCCAGTCTCCCACTCCTCTTTGTCAGTGTTTCCACTTTTCTTCCTTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

244

Amino Acids

26.73

Weight (kDa)

8.48

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 62 1.3e-11 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 410
AciI CCGC 6 cut(s) 215, 408, 483, 585, 622, 678
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 598
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 111, 191
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 2 cut(s) 180, 194
AluI AGCT 2 cut(s) 180, 194
Alw21I GWGCWC 2 cut(s) 472, 639
Alw26I GTCTC 2 cut(s) 329, 689
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 79
AspLEI GCGC 2 cut(s) 299, 352
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 472, 639
BccI CCATC 2 cut(s) 110, 537
BcoDI GTCTC 2 cut(s) 329, 689
Bme18I GGWCC 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 681
BseCI ATCGAT 1 cut(s) 114
BseGI GGATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 110, 645
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 1 cut(s) 683
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 472, 639
BsiSI CCGG 2 cut(s) 80, 204
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 329, 689
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 472, 639
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 6 cut(s) 215, 408, 483, 585, 622, 678
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 109, 644
BspDI ATCGAT 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 1 cut(s) 50
BstC8I GCNNGC 4 cut(s) 144, 315, 546, 589
BstDEI CTNAG 2 cut(s) 96, 631
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 2 cut(s) 299, 352
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 329, 689
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 146
BstPAI GACNNNNGTC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 114
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 624, 639, 709
Cac8I GCNNGC 4 cut(s) 144, 315, 546, 589
CfoI GCGC 2 cut(s) 299, 352
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 597
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 3 cut(s) 58, 143, 594
CviJI RGCY 6 cut(s) 33, 67, 180, 194, 242, 591
CviKI_1 RGCY 6 cut(s) 33, 67, 180, 194, 242, 591
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 2 cut(s) 96, 631
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
EciI GGCGGA 2 cut(s) 574, 667
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 3 cut(s) 61, 146, 597
FaiI YATR 6 cut(s) 59, 144, 255, 516, 518, 595
FaqI GGGAC 1 cut(s) 70
FatI CATG 3 cut(s) 57, 142, 593
FauI CCCGC 1 cut(s) 490
FokI GGATG 1 cut(s) 516
GlaI GCGC 2 cut(s) 298, 351
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 80, 204
HgaI GACGC 1 cut(s) 537
HhaI GCGC 2 cut(s) 299, 352
Hin1II CATG 3 cut(s) 61, 146, 597
Hin6I GCGC 2 cut(s) 297, 350
HinP1I GCGC 2 cut(s) 297, 350
HpaII CCGG 2 cut(s) 80, 204
Hpy166II GTNNAC 2 cut(s) 17, 77
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 153, 236
Hpy8I GTNNAC 2 cut(s) 17, 77
HpyAV CCTTC 4 cut(s) 368, 513, 628, 655
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 96, 631
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 61, 146, 597
HspAI GCGC 2 cut(s) 297, 350
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 345, 415
MaeII ACGT 1 cut(s) 73
MalI GATC 1 cut(s) 52
MbiI CCGCTC 1 cut(s) 410
MboI GATC 1 cut(s) 50
MboII GAAGA 5 cut(s) 99, 368, 554, 598, 710
MhlI GDGCHC 2 cut(s) 472, 639
MluCI AATT 4 cut(s) 122, 441, 571, 727
MseI TTAA 5 cut(s) 39, 159, 440, 570, 726
MspA1I CMGCKG 2 cut(s) 215, 485
MspI CCGG 2 cut(s) 80, 204
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 1 cut(s) 50
NlaIII CATG 3 cut(s) 61, 146, 597
NlaIV GGNNCC 1 cut(s) 208
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PceI AGGCCT 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
SaqAI TTAA 5 cut(s) 39, 159, 440, 570, 726
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 472, 639
SetI ASST 4 cut(s) 76, 182, 196, 602
SinI GGWCC 1 cut(s) 77
SphI GCATGC 1 cut(s) 146
Sse9I AATT 4 cut(s) 122, 441, 571, 727
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 6 cut(s) 215, 408, 483, 585, 622, 678
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 114
TasI AATT 4 cut(s) 122, 441, 571, 727
Tru1I TTAA 5 cut(s) 39, 159, 440, 570, 726
Tru9I TTAA 5 cut(s) 39, 159, 440, 570, 726
TscAI CASTG 3 cut(s) 631, 639, 709
TspDTI ATGAA 2 cut(s) 422, 495
TspGWI ACGGA 2 cut(s) 311, 380
TspRI CASTG 3 cut(s) 631, 639, 709
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.