Rh1DG166000

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001618
Physical Location & Seq
Forward (+)
33945914 .. 33946792
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG166000.1

Sequence Viewer

Length: 879 bp
ATGGTTGGGATTTTGAATAATCATTCTCTCCCCATTGCAATGGCATTAGCATTATCTGTTACCTATTTGTTGCATTTCTCTCTAGTACAAGTTGACCATAAGGGCGGCTTCAGCGTGAAGCTCATTCACCGCAACTCTCCGTTGTCTCCTTTCTACAATCCTTCAGAAACACCTTCGCAACGCGTGACAAATGCTTTGCAACGTTCCATCAACCGTGTCAATCTCTTCGGATCAACTAATTTGTTACCTTCATTAAACGATCCTGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCATTCCTCCCGTAGAAATCTCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCATGCCTTGCAGCAGCTGTTACAAGCAAAAATCTCTGCTCTTTGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTAAATGTCAATCTGTAAGTGGAACCTCTTGCTCAGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCCTACAGCAGTGGAATTGTATCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCAATGTCCCTTATCTCCCAAATGGATTCTTCAATTGATGGAAAATTCTCCTACTGCCTTGTTCCAGCTTTTTCACCACTTAACTCTTCAAGCAAAATGAGCTTTGGTAATAATGCTGTGGTTTCTGGTGCCATGGTGGTTTCTACCCCATTACTTTCAGGTATGGTATACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

292

Amino Acids

31.34

Weight (kDa)

8.04

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 99 - 271 2.1e-49 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 830
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 105, 130
AclI AACGTT 1 cut(s) 202
AclWI GGATC 6 cut(s) 238, 254, 419, 537, 682, 709
AcsI RAATTY 2 cut(s) 433, 746
AcuI CTGAAG 2 cut(s) 94, 147
AfaI GTAC 2 cut(s) 87, 296
AflIII ACRYGT 2 cut(s) 181, 873
AgsI TTSAA 5 cut(s) 16, 377, 586, 735, 792
AjiI CACGTC 1 cut(s) 698
AluBI AGCT 6 cut(s) 121, 356, 396, 597, 770, 804
AluI AGCT 6 cut(s) 121, 356, 396, 597, 770, 804
Alw26I GTCTC 2 cut(s) 150, 566
AlwI GGATC 6 cut(s) 238, 254, 419, 537, 682, 709
AlwNI CAGNNNCTG 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 390, 393
ApoI RAATTY 2 cut(s) 433, 746
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AsuHPI GGTGA 2 cut(s) 119, 768
BaeGI GKGCMC 1 cut(s) 645
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BanI GGYRCC 1 cut(s) 830
BbvI GCAGC 2 cut(s) 402, 405
BccI CCATC 3 cut(s) 215, 665, 734
BcoDI GTCTC 2 cut(s) 150, 566
BfaI CTAG 3 cut(s) 83, 357, 594
BfmI CTRYAG 2 cut(s) 532, 547
BisI GCNGC 3 cut(s) 106, 391, 394
BlsI GCNGC 3 cut(s) 107, 392, 395
BmgBI CACGTC 1 cut(s) 698
BmiI GGNNCC 2 cut(s) 493, 832
Bpu10I CCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 874
BsaJI CCNNGG 1 cut(s) 834
Bse3DI GCAATG 2 cut(s) 33, 45
BseDI CCNNGG 1 cut(s) 834
BseMI GCAATG 2 cut(s) 33, 45
BseMII CTCAG 2 cut(s) 351, 516
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 2 cut(s) 402, 405
Bsh1236I CGCG 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 830
BslFI GGGAC 1 cut(s) 694
BsmAI GTCTC 2 cut(s) 150, 566
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 645
Bsp143I GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 2 cut(s) 105, 130
BspCNI CTCAG 2 cut(s) 350, 515
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 493, 832
BspPI GGATC 6 cut(s) 238, 254, 419, 537, 682, 709
BspT107I GGYRCC 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 33, 45
BssECI CCNNGG 1 cut(s) 834
BssMI GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
BssNAI GTATAC 1 cut(s) 871
BssT1I CCWWGG 1 cut(s) 834
Bst1107I GTATAC 1 cut(s) 871
Bst4CI ACNGT 3 cut(s) 215, 610, 653
Bst6I CTCTTC 2 cut(s) 230, 793
BstAPI GCANNNNNTGC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 874
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 337, 502, 598
BstDSI CCRYGG 1 cut(s) 834
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 8 cut(s) 233, 262, 364, 427, 545, 579, 677, 704
BstMAI GTCTC 2 cut(s) 150, 566
BstMBI GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
BstMWI GCNNNNNNNGC 4 cut(s) 111, 353, 387, 801
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 2 cut(s) 532, 547
BstSLI GKGCMC 1 cut(s) 645
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 402, 405
BstX2I RGATCY 1 cut(s) 542
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 542
BstZ17I GTATAC 1 cut(s) 871
BtgI CCRYGG 1 cut(s) 834
BtrI CACGTC 1 cut(s) 698
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 559, 658
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 396
CciI TCATGA 1 cut(s) 300
Csp6I GTAC 2 cut(s) 86, 295
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 4 cut(s) 301, 369, 382, 835
CviJI RGCY 7 cut(s) 108, 121, 356, 396, 597, 770, 804
CviKI_1 RGCY 7 cut(s) 108, 121, 356, 396, 597, 770, 804
CviQI GTAC 2 cut(s) 86, 295
DdeI CTNAG 3 cut(s) 337, 502, 598
DpnI GATC 8 cut(s) 232, 261, 363, 426, 544, 578, 676, 703
DpnII GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
Eam1104I CTCTTC 2 cut(s) 230, 793
EarI CTCTTC 2 cut(s) 230, 793
Eco130I CCWWGG 1 cut(s) 834
Eco57I CTGAAG 2 cut(s) 94, 147
EcoRI GAATTC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 834
EcoT22I ATGCAT 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 834
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 4 cut(s) 304, 372, 385, 838
FaiI YATR 9 cut(s) 99, 302, 370, 383, 534, 629, 836, 866, 871
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 694
FatI CATG 4 cut(s) 300, 368, 381, 834
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 3 cut(s) 106, 391, 394
Fsp4HI GCNGC 3 cut(s) 106, 391, 394
FspBI CTAG 3 cut(s) 83, 357, 594
GluI GCNGC 3 cut(s) 106, 391, 394
Hin1II CATG 4 cut(s) 304, 372, 385, 838
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 3 cut(s) 266, 373, 728
HphI GGTGA 2 cut(s) 119, 768
Hpy166II GTNNAC 3 cut(s) 94, 656, 871
Hpy188I TCNGA 5 cut(s) 166, 230, 283, 429, 505
Hpy188III TCNNGA 3 cut(s) 263, 301, 339
Hpy8I GTNNAC 3 cut(s) 94, 656, 871
HpyAV CCTTC 3 cut(s) 171, 183, 258
HpyCH4III ACNGT 3 cut(s) 215, 610, 653
HpyCH4IV ACGT 3 cut(s) 202, 697, 873
HpyCH4V TGCA 6 cut(s) 38, 73, 199, 347, 381, 390
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 353, 387, 801
HpyF3I CTNAG 3 cut(s) 337, 502, 598
HpySE526I ACGT 3 cut(s) 202, 697, 873
Hsp92II CATG 4 cut(s) 304, 372, 385, 838
Kzo9I GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
LpnPI CCDG 7 cut(s) 276, 324, 526, 663, 780, 813, 846
Lsp1109I GCAGC 2 cut(s) 402, 405
MaeI CTAG 3 cut(s) 83, 357, 594
MaeII ACGT 3 cut(s) 202, 697, 873
MaeIII GTNAC 5 cut(s) 58, 184, 243, 398, 515
MalI GATC 8 cut(s) 232, 261, 363, 426, 544, 578, 676, 703
MboI GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
MboII GAAGA 6 cut(s) 217, 442, 518, 680, 723, 780
MfeI CAATTG 2 cut(s) 312, 735
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 645
MluCI AATT 7 cut(s) 238, 312, 433, 558, 630, 735, 746
MluI ACGCGT 1 cut(s) 181
MnlI CCTC 4 cut(s) 308, 333, 475, 505
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 3 cut(s) 254, 663, 783
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 396
MunI CAATTG 2 cut(s) 312, 735
Mva1269I GAATGC 1 cut(s) 318
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 111, 353, 387, 801
NcoI CCATGG 1 cut(s) 834
NdeII GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
NlaIII CATG 4 cut(s) 304, 372, 385, 838
NlaIV GGNNCC 2 cut(s) 493, 832
NmuCI GTSAC 2 cut(s) 184, 515
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 300
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 266, 373, 728
PkrI GCNGC 3 cut(s) 107, 392, 395
Ppu21I YACGTR 1 cut(s) 874
PsiI TTATAA 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 493, 832
PstNI CAGNNNCTG 1 cut(s) 396
PsuI RGATCY 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 396
RsaI GTAC 2 cut(s) 87, 296
RsaNI GTAC 2 cut(s) 86, 295
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 3 cut(s) 254, 663, 783
SatI GCNGC 3 cut(s) 106, 391, 394
Sau3AI GATC 8 cut(s) 230, 259, 361, 424, 542, 576, 674, 701
SduI GDGCHC 1 cut(s) 645
SfcI CTRYAG 2 cut(s) 532, 547
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
SphI GCATGC 1 cut(s) 385
Sse9I AATT 7 cut(s) 238, 312, 433, 558, 630, 735, 746
SsiI CCGC 2 cut(s) 105, 130
SspMI CTAG 3 cut(s) 83, 357, 594
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 3 cut(s) 215, 610, 653
TaiI ACGT 3 cut(s) 205, 700, 876
TasI AATT 7 cut(s) 238, 312, 433, 558, 630, 735, 746
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 3 cut(s) 266, 373, 728
Tru1I TTAA 3 cut(s) 254, 663, 783
Tru9I TTAA 3 cut(s) 254, 663, 783
TscAI CASTG 2 cut(s) 559, 658
TseFI GTSAC 2 cut(s) 184, 515
TseI GCWGC 2 cut(s) 390, 393
Tsp45I GTSAC 2 cut(s) 184, 515
TspDTI ATGAA 3 cut(s) 240, 317, 681
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 559, 658
XapI RAATTY 2 cut(s) 433, 746
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 3 cut(s) 83, 357, 594
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.