Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

21640712 .. 21641857

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAACCTTTGACAAGAAAGGGTGACCAAACAAGCAAGTTGAACTTTGGTGACAATGCTGTGGTTTCCGGATCTGGCGTTCTTTCCACTCCCATTGTCAAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACAAAAATTCCCTTCTCATCCTCAATTTCAGGCTCTGGTGAGGGCAACATTATAATCGACTCCGGCACCACACTAACCATACTAGAGCAGTCCTTCTACTCGAAGCTAGAAGAAGCAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAGCGACCCTCAGATTGGAATACCTCTTTGCTATAAGGTGAGTCTATCCCAGGATTTGAAGGTCCCAAATATTACCGTACATTTCACCGGCGCTGATGTGAAGTTGGAGCAGCAGAACACTTTTGTTAGGGTGAGCGATGATACTGTATGCTTTGCCTTTGCTCCGGCGCAGAGTCTTTCGATCTATGGGAACCTGGCCCAAGCGGGTTTCTTGGTGGGATATGACCTTAAGGGCAAGGCTGTGTCCTTCAAGCCAATGCATAACCACTTAATCAACATCTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

197

Amino Acids

21.34

Weight (kDa)

5.77

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	4 - 185	4e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	42 - 186	1.3e-28	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AasI	GACNNNNNNGTC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	2 cut(s)	294, 509
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	43, 364, 556
AjnI	CCWGG	2 cut(s)	354, 498
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	303, 398, 475
AspS9I	GGNCC	2 cut(s)	367, 502
AsuHPI	GGTGA	6 cut(s)	35, 62, 209, 355, 382, 448
AvaII	GGWCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	427
BciT130I	CCWGG	2 cut(s)	356, 500
BfaI	CTAG	2 cut(s)	242, 266
BfoI	RGCGCY	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	356, 500
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	367, 502
BmiI	GGNNCC	4 cut(s)	6, 226, 369, 497
BmrFI	CCNGG	2 cut(s)	356, 500
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	356, 500
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	4 cut(s)	69, 222, 393, 470
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	71, 103, 486
BspACI	CCGC	2 cut(s)	294, 509
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	4 cut(s)	6, 226, 369, 497
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	71, 103, 486
Bst2UI	CCWGG	2 cut(s)	356, 500
Bst4CI	ACNGT	2 cut(s)	382, 451
BstAFI	CTTAAG	1 cut(s)	533
BstDEI	CTNAG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	3 cut(s)	303, 398, 475
BstKTI	GATC	3 cut(s)	74, 106, 489
BstMBI	GATC	3 cut(s)	71, 103, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	2 cut(s)	356, 500
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	354, 498
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	3 cut(s)	303, 398, 475
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	367, 502
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviJI	RGCY	6 cut(s)	143, 192, 265, 503, 545, 559
CviKI_1	RGCY	6 cut(s)	143, 192, 265, 503, 545, 559
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	73, 105, 488
DpnII	GATC	3 cut(s)	71, 103, 486
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	354, 498
EcoT22I	ATGCAT	1 cut(s)	567
FaiI	YATR	8 cut(s)	146, 212, 239, 339, 454, 492, 528, 567
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	353
FauI	CCCGC	2 cut(s)	287, 502
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	242, 266
GlaI	GCGC	3 cut(s)	302, 397, 474
GluI	GCNGC	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	4 cut(s)	69, 222, 393, 470
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	3 cut(s)	303, 398, 475
Hin6I	GCGC	3 cut(s)	301, 396, 473
HinP1I	GCGC	3 cut(s)	301, 396, 473
HincII	GTYRAC	2 cut(s)	154, 280
HindII	GTYRAC	2 cut(s)	154, 280
HinfI	GANTC	3 cut(s)	218, 346, 478
HpaII	CCGG	4 cut(s)	69, 222, 393, 470
HphI	GGTGA	6 cut(s)	35, 62, 209, 355, 382, 448
Hpy166II	GTNNAC	2 cut(s)	154, 280
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	2 cut(s)	69, 130
Hpy8I	GTNNAC	2 cut(s)	154, 280
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	5 cut(s)	130, 181, 262, 358, 562
HpyCH4III	ACNGT	2 cut(s)	382, 451
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	315
HspAI	GCGC	3 cut(s)	301, 396, 473
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	71, 103, 486
LmnI	GCTCC	3 cut(s)	298, 412, 472
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	242, 266
MaeIII	GTNAC	2 cut(s)	23, 50
MalI	GATC	3 cut(s)	73, 105, 488
MboI	GATC	3 cut(s)	71, 103, 486
MboII	GAAGA	3 cut(s)	115, 118, 281
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	2 cut(s)	165, 183
MlyI	GAGTC	3 cut(s)	212, 355, 487
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	133, 190, 193, 324, 339
Mph1103I	ATGCAT	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	3 cut(s)	534, 575, 592
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	4 cut(s)	69, 222, 393, 470
MspR9I	CCNGG	2 cut(s)	356, 500
MvaI	CCWGG	2 cut(s)	356, 500
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	300
NdeII	GATC	3 cut(s)	71, 103, 486
NlaIV	GGNNCC	4 cut(s)	6, 226, 369, 497
NmuCI	GTSAC	2 cut(s)	23, 50
NsiI	ATGCAT	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	3 cut(s)	212, 354, 486
PpsI	GAGTC	3 cut(s)	212, 354, 486
PpuMI	RGGWCCY	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	354, 498
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	354, 498
PspN4I	GGNNCC	4 cut(s)	6, 226, 369, 497
PspPI	GGNCC	2 cut(s)	367, 502
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	534, 575, 592
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	71, 103, 486
Sau96I	GGNCC	2 cut(s)	367, 502
SchI	GAGTC	3 cut(s)	212, 355, 487
ScrFI	CCNGG	2 cut(s)	356, 500
SetI	ASST	9 cut(s)	10, 122, 267, 288, 331, 345, 369, 501, 534
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	2 cut(s)	165, 183
SsiI	CCGC	2 cut(s)	294, 509
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	242, 266
StyD4I	CCNGG	2 cut(s)	354, 498
TaaI	ACNGT	2 cut(s)	382, 451
TaqI	TCGA	4 cut(s)	153, 216, 260, 485
TasI	AATT	2 cut(s)	165, 183
Tru1I	TTAA	3 cut(s)	534, 575, 592
Tru9I	TTAA	3 cut(s)	534, 575, 592
TseFI	GTSAC	2 cut(s)	23, 50
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	2 cut(s)	23, 50
TspDTI	ATGAA	1 cut(s)	578
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	2 cut(s)	242, 266
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.