Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

34257400 .. 34258948

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTTGCGATTTTGAATAATCATTCTCTCCCCATTGCAATGGCATTAGCATTATCTGTTACCTATTTGTTGCATTTCTCTCTAGTACAAGCTGACCATAAGGGCGGCTTCAGCGTGAAGCTCATTCACTGCAACTCTCCGCTGTCTCCTTTCTACAATCCTTCAGAAACACCTTCGCAATGCGTGACAAATGCTTTGCAACGTTCCATCAACCGTGTCAATCTCTTCAGATCAACTAATTTGTTACCTTCATTAAACGATCCTGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCACTCCTCCCGTAGAAATCTCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCATGCCTTGCAGCAGCTGTTACAAGCAAAAATCTCCGCTCTTTGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTCTTGCTCGGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCGTACAGCAATGGAATTGTATCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCAATGTCCCTTATCTCCCAAATGTATTCTTCAATTGATGGGAAATTCTCCTACTGCCTTGTTCCAGCTTTTTCACCACTTAACTCTTCAAGCAAAGTGAGCTTTGGTAATAATGCTGTGGTTTCTGGTGCCATGGTGGTTTCTACCCCATTACTTTCAGGAGACCTAAAATCTTTCTATTTTGTAAAGCTGGAAGCAATGAGTGTGGGACGCAAGAAATTGCAATACAACAGTACACTGATGCCAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTTTTACAATAGGCTGGAATTGACAATGAGTAAGGCCATAAGATCAAAACGAGTAAGACACGCTAGTCGCTACTTAAGCCTTTGCTACAAGACCAAATCGGCTATCAAAGCTCCCATAATTACTGCACATTTCACCGGTGCGGCTGTTAAGTTGAAAGCTTCGAACACTTTCATAAGAGTGTCAATGGATGTTGTCTGCTTTGCTTTCAGACCCATCACTCAAGGTAATGCCATCTTTGGCAGTATGGCACAAACGAATTTCTTGATAGGCTATGACCTCAAGAAAGAGTCCATCTCTTTTAAGCCAACTGATTGCAGTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

447

Amino Acids

48.49

Weight (kDa)

9.28

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	98 - 438	6.7e-15	Eukaryotic aspartyl protease
TAXi_N	PF14543	99 - 271	1.1e-50	Xylanase inhibitor N-terminal
TAXi_C	PF14541	294 - 439	1.2e-26	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AasI	GACNNNNNNGTC	1 cut(s)	1077
AccB1I	GGYRCC	1 cut(s)	830
AccBSI	CCGCTC	1 cut(s)	418
AciI	CCGC	4 cut(s)	105, 140, 416, 1154
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	4 cut(s)	254, 419, 682, 709
AcsI	RAATTY	3 cut(s)	433, 746, 1270
AcuI	CTGAAG	3 cut(s)	94, 147, 211
AfaI	GTAC	4 cut(s)	87, 296, 548, 937
AfiI	CCNNNNNNNGG	1 cut(s)	962
AflII	CTTAAG	1 cut(s)	1087
AgeI	ACCGGT	1 cut(s)	1148
AgsI	TTSAA	6 cut(s)	16, 377, 586, 735, 792, 1168
AjiI	CACGTC	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	955
Alw26I	GTCTC	3 cut(s)	150, 566, 858
AlwI	GGATC	4 cut(s)	254, 419, 682, 709
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	1047
ApeKI	GCWGC	2 cut(s)	390, 393
ApoI	RAATTY	3 cut(s)	433, 746, 1270
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsiGI	ACCGGT	1 cut(s)	1148
Asp700I	GAANNNNTTC	1 cut(s)	1181
AsuHPI	GGTGA	2 cut(s)	768, 1138
AsuII	TTCGAA	1 cut(s)	1175
BaeGI	GKGCMC	1 cut(s)	645
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	402, 405
BccI	CCATC	6 cut(s)	215, 665, 734, 1235, 1253, 1313
BciT130I	CCWGG	1 cut(s)	957
BcoDI	GTCTC	3 cut(s)	150, 566, 858
BfaI	CTAG	4 cut(s)	83, 357, 594, 1077
BfmI	CTRYAG	1 cut(s)	532
BfrI	CTTAAG	1 cut(s)	1087
BisI	GCNGC	4 cut(s)	106, 391, 394, 1155
BlsI	GCNGC	4 cut(s)	107, 392, 395, 1156
Bme1390I	CCNGG	1 cut(s)	957
BmgBI	CACGTC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	493, 832
BmrFI	CCNGG	1 cut(s)	957
BmsI	GCATC	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	1292, 1324
BpmI	CTGGAG	1 cut(s)	939
Bpu10I	CCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	1175
BpuEI	CTTGAG	3 cut(s)	451, 1218, 1277
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	834
BsaWI	WCCGGW	1 cut(s)	1148
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse118I	RCCGGY	1 cut(s)	1148
Bse3DI	GCAATG	5 cut(s)	33, 45, 185, 559, 906
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	1 cut(s)	1207
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMI	GCAATG	5 cut(s)	33, 45, 185, 559, 906
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	402, 405
BsgI	GTGCAG	1 cut(s)	1122
BshFI	GGCC	1 cut(s)	1049
BshNI	GGYRCC	1 cut(s)	830
BshTI	ACCGGT	1 cut(s)	1148
BsiSI	CCGG	1 cut(s)	1149
BslFI	GGGAC	3 cut(s)	694, 924, 1000
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	3 cut(s)	150, 566, 858
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	3 cut(s)	694, 924, 1000
BsnI	GGCC	1 cut(s)	1049
Bso31I	GGTCTC	1 cut(s)	858
Bsp119I	TTCGAA	1 cut(s)	1175
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	4 cut(s)	105, 140, 416, 1154
BspANI	GGCC	1 cut(s)	1049
BspCNI	CTCAG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	493, 832
BspPI	GGATC	4 cut(s)	254, 419, 682, 709
BspT104I	TTCGAA	1 cut(s)	1175
BspT107I	GGYRCC	1 cut(s)	830
BspTI	CTTAAG	1 cut(s)	1087
BspTNI	GGTCTC	1 cut(s)	858
BsrBI	CCGCTC	1 cut(s)	418
BsrDI	GCAATG	5 cut(s)	33, 45, 185, 559, 906
BsrFI	RCCGGY	1 cut(s)	1148
BssAI	RCCGGY	1 cut(s)	1148
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	4 cut(s)	215, 610, 653, 935
Bst6I	CTCTTC	2 cut(s)	230, 793
BstAFI	CTTAAG	1 cut(s)	1087
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	1175
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	337, 598
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	1 cut(s)	1207
BstKTI	GATC	9 cut(s)	233, 262, 364, 427, 545, 579, 677, 704, 1058
BstMAI	GTCTC	3 cut(s)	150, 566, 858
BstMBI	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 801, 1089, 1121
BstNI	CCWGG	1 cut(s)	957
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	955
BstSFI	CTRYAG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	402, 405
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	1049
BtgI	CCRYGG	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	1207
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	127, 658, 938
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	1148
CseI	GACGC	1 cut(s)	921
Csp6I	GTAC	4 cut(s)	86, 295, 547, 936
CspAI	ACCGGT	1 cut(s)	1148
CspCI	CAANNNNNGTGG	4 cut(s)	634, 669, 888, 923
CviAII	CATG	4 cut(s)	301, 369, 382, 835
CviQI	GTAC	4 cut(s)	86, 295, 547, 936
DdeI	CTNAG	2 cut(s)	337, 598
DpnI	GATC	9 cut(s)	232, 261, 363, 426, 544, 578, 676, 703, 1057
DpnII	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
DrdI	GACNNNNNNGTC	1 cut(s)	1077
DseDI	GACNNNNNNGTC	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	230, 793
EarI	CTCTTC	2 cut(s)	230, 793
Eco130I	CCWWGG	1 cut(s)	834
Eco31I	GGTCTC	1 cut(s)	858
Eco57I	CTGAAG	3 cut(s)	94, 147, 211
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	834
EcoT22I	ATGCAT	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	834
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	4 cut(s)	304, 372, 385, 838
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	3 cut(s)	694, 924, 1000
FatI	CATG	4 cut(s)	300, 368, 381, 834
Fnu4HI	GCNGC	4 cut(s)	106, 391, 394, 1155
FokI	GGATG	1 cut(s)	1214
Fsp4HI	GCNGC	4 cut(s)	106, 391, 394, 1155
FspBI	CTAG	4 cut(s)	83, 357, 594, 1077
GluI	GCNGC	4 cut(s)	106, 391, 394, 1155
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	1 cut(s)	1049
HapII	CCGG	1 cut(s)	1149
HgaI	GACGC	1 cut(s)	921
Hin1II	CATG	4 cut(s)	304, 372, 385, 838
HindIII	AAGCTT	1 cut(s)	1170
HinfI	GANTC	4 cut(s)	266, 373, 980, 1301
HpaII	CCGG	1 cut(s)	1149
HphI	GGTGA	2 cut(s)	768, 1138
Hpy166II	GTNNAC	2 cut(s)	656, 938
Hpy188I	TCNGA	6 cut(s)	166, 230, 283, 429, 505, 1223
Hpy188III	TCNNGA	6 cut(s)	263, 301, 339, 861, 1276, 1294
Hpy8I	GTNNAC	2 cut(s)	656, 938
HpyAV	CCTTC	4 cut(s)	171, 183, 258, 954
HpyCH4III	ACNGT	4 cut(s)	215, 610, 653, 935
HpyCH4IV	ACGT	2 cut(s)	202, 697
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 801, 1089, 1121
HpyF3I	CTNAG	2 cut(s)	337, 598
HpySE526I	ACGT	2 cut(s)	202, 697
Hsp92II	CATG	4 cut(s)	304, 372, 385, 838
Kzo9I	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
LmnI	GCTCC	2 cut(s)	958, 1129
Lsp1109I	GCAGC	2 cut(s)	402, 405
LweI	GCATC	1 cut(s)	933
MaeI	CTAG	4 cut(s)	83, 357, 594, 1077
MaeII	ACGT	2 cut(s)	202, 697
MaeIII	GTNAC	6 cut(s)	58, 184, 243, 398, 515, 1002
MalI	GATC	9 cut(s)	232, 261, 363, 426, 544, 578, 676, 703, 1057
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
MboII	GAAGA	6 cut(s)	217, 442, 518, 680, 723, 780
MfeI	CAATTG	2 cut(s)	312, 735
MhlI	GDGCHC	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	1310
MnlI	CCTC	5 cut(s)	308, 333, 475, 505, 1301
Mph1103I	ATGCAT	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	1181
MseI	TTAA	7 cut(s)	254, 663, 783, 1088, 1161, 1314, 1339
MslI	CAYNNNNRTG	2 cut(s)	38, 1190
MspA1I	CMGCKG	2 cut(s)	142, 396
MspCI	CTTAAG	1 cut(s)	1087
MspI	CCGG	1 cut(s)	1149
MspR9I	CCNGG	1 cut(s)	957
MunI	CAATTG	2 cut(s)	312, 735
MvaI	CCWGG	1 cut(s)	957
MwoI	GCNNNNNNNGC	6 cut(s)	111, 353, 387, 801, 1089, 1121
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
NlaIII	CATG	4 cut(s)	304, 372, 385, 838
NlaIV	GGNNCC	2 cut(s)	493, 832
NmuCI	GTSAC	2 cut(s)	184, 515
NsiI	ATGCAT	1 cut(s)	383
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	1175
PaeI	GCATGC	1 cut(s)	385
PagI	TCATGA	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	1181
PfeI	GAWTC	3 cut(s)	266, 373, 980
PfoI	TCCNGGA	1 cut(s)	955
PinAI	ACCGGT	1 cut(s)	1148
PkrI	GCNGC	4 cut(s)	107, 392, 395, 1156
PleI	GAGTC	1 cut(s)	1309
PpsI	GAGTC	1 cut(s)	1309
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	2 cut(s)	493, 832
PstNI	CAGNNNCTG	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	4 cut(s)	87, 296, 548, 937
RsaNI	GTAC	4 cut(s)	86, 295, 547, 936
RseI	CAYNNNNRTG	2 cut(s)	38, 1190
SaqAI	TTAA	7 cut(s)	254, 663, 783, 1088, 1161, 1314, 1339
SatI	GCNGC	4 cut(s)	106, 391, 394, 1155
Sau3AI	GATC	9 cut(s)	230, 259, 361, 424, 542, 576, 674, 701, 1055
SchI	GAGTC	1 cut(s)	1310
ScrFI	CCNGG	1 cut(s)	957
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	1 cut(s)	933
SfcI	CTRYAG	1 cut(s)	532
SfuI	TTCGAA	1 cut(s)	1175
SgrAI	CRCCGGYG	1 cut(s)	1148
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1190
SmlI	CTYRAG	4 cut(s)	466, 1087, 1233, 1292
SmoI	CTYRAG	4 cut(s)	466, 1087, 1233, 1292
SphI	GCATGC	1 cut(s)	385
SsiI	CCGC	4 cut(s)	105, 140, 416, 1154
SspMI	CTAG	4 cut(s)	83, 357, 594, 1077
StyD4I	CCNGG	1 cut(s)	955
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	4 cut(s)	215, 610, 653, 935
TaiI	ACGT	2 cut(s)	205, 700
TaqI	TCGA	1 cut(s)	1175
TatI	WGTACW	2 cut(s)	85, 935
TauI	GCSGC	2 cut(s)	108, 1157
TfiI	GAWTC	3 cut(s)	266, 373, 980
Tru1I	TTAA	7 cut(s)	254, 663, 783, 1088, 1161, 1314, 1339
Tru9I	TTAA	7 cut(s)	254, 663, 783, 1088, 1161, 1314, 1339
TscAI	CASTG	3 cut(s)	134, 658, 945
TseFI	GTSAC	2 cut(s)	184, 515
TseI	GCWGC	2 cut(s)	390, 393
Tsp45I	GTSAC	2 cut(s)	184, 515
TspDTI	ATGAA	4 cut(s)	240, 317, 681, 1174
TspRI	CASTG	3 cut(s)	134, 658, 945
Vha464I	CTTAAG	1 cut(s)	1087
XapI	RAATTY	3 cut(s)	433, 746, 1270
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	1181
XspI	CTAG	4 cut(s)	83, 357, 594, 1077
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.