Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

33805081 .. 33808736

Gene Structure 3656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG164600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAGACGGTAGCTCCACACGTTTTTCTCGATGGAAAGTTTTCATATTGCTTGATCCCTTTTGCCTCGGAAGGTGACCAAACAAGCAAGTTGAACTTTGGTGACAATGCTGTGGTTTCCGGATCTGGCGTTCTTTCCACTCCCATTGTCAAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACAAAAATTCCCTTCTCATCCTCAATTTCAGGCTCTGGTGAGGGCAACATTATAATCGACTCCGGCACCACACTAACCATACTAGAGCAGTCCTTCTACTCGAAGCTAGAAGAAGCAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAGCGACCCTCAGATTGGAATACCTCTTTGCTATAAGGTGAGTCTATCCCAGGATTTGAAGGTCCCAAATATTACCGTACATTTCACCGGCGCTGATGTGAAGTTGGAGCAGCAGAACACTTTTGTTAGGGTGAGCGATGATACTGTATGCTTTGCCTTTGCTCCGGCGCAGAGTCTTTCGATCTATGGGAACCTGGCCCAAGCGGGTTTCTTGGTGGGATATGACCTTAAGGGCAAGGCTGTGTCCTTCAAGCCAAGTGACTGCACCAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

210

Amino Acids

22.59

Weight (kDa)

5.0

Isoelectric Point (pI)

26.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	23 - 202	6.6e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	59 - 203	1.6e-28	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	2 cut(s)	345, 560
AclWI	GGATC	2 cut(s)	49, 130
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	94, 415, 607
AjnI	CCWGG	2 cut(s)	405, 549
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	14, 316
AluI	AGCT	2 cut(s)	14, 316
AlwI	GGATC	2 cut(s)	49, 130
AlwNI	CAGNNNCTG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	3 cut(s)	354, 449, 526
AspS9I	GGNCC	2 cut(s)	418, 553
AsuHPI	GGTGA	6 cut(s)	86, 113, 260, 406, 433, 499
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	407, 551
BfaI	CTAG	2 cut(s)	293, 317
BfoI	RGCGCY	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme1390I	CCNGG	2 cut(s)	407, 551
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	418, 553
BmiI	GGNNCC	3 cut(s)	277, 420, 548
BmrFI	CCNGG	2 cut(s)	407, 551
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BsaJI	CCNNGG	2 cut(s)	66, 405
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	443
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	407, 551
BseDI	CCNNGG	2 cut(s)	66, 405
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	120, 273, 444, 521
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	554
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	54, 122, 154, 537
BspACI	CCGC	2 cut(s)	345, 560
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	277, 420, 548
BspPI	GGATC	2 cut(s)	49, 130
BspT107I	GGYRCC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	66, 405
BssMI	GATC	4 cut(s)	54, 122, 154, 537
Bst2UI	CCWGG	2 cut(s)	407, 551
Bst4CI	ACNGT	3 cut(s)	10, 433, 502
BstAFI	CTTAAG	1 cut(s)	584
BstDEI	CTNAG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	3 cut(s)	354, 449, 526
BstKTI	GATC	4 cut(s)	57, 125, 157, 540
BstMBI	GATC	4 cut(s)	54, 122, 154, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	2 cut(s)	407, 551
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	405, 549
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	3 cut(s)	354, 449, 526
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	418, 553
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	434
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviJI	RGCY	7 cut(s)	14, 194, 243, 316, 554, 596, 610
CviKI_1	RGCY	7 cut(s)	14, 194, 243, 316, 554, 596, 610
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	4 cut(s)	56, 124, 156, 539
DpnII	GATC	4 cut(s)	54, 122, 154, 537
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	418
Eco91I	GGTNACC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	405, 549
FaiI	YATR	8 cut(s)	46, 197, 263, 290, 390, 505, 543, 579
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	404
FauI	CCCGC	2 cut(s)	338, 553
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	467
FspBI	CTAG	2 cut(s)	293, 317
GlaI	GCGC	3 cut(s)	353, 448, 525
GluI	GCNGC	1 cut(s)	467
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	4 cut(s)	120, 273, 444, 521
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	354, 449, 526
Hin6I	GCGC	3 cut(s)	352, 447, 524
HinP1I	GCGC	3 cut(s)	352, 447, 524
HincII	GTYRAC	2 cut(s)	205, 331
HindII	GTYRAC	2 cut(s)	205, 331
HinfI	GANTC	3 cut(s)	269, 397, 529
HpaII	CCGG	4 cut(s)	120, 273, 444, 521
HphI	GGTGA	6 cut(s)	86, 113, 260, 406, 433, 499
Hpy166II	GTNNAC	2 cut(s)	205, 331
Hpy188I	TCNGA	2 cut(s)	70, 369
Hpy188III	TCNNGA	3 cut(s)	29, 120, 181
Hpy8I	GTNNAC	2 cut(s)	205, 331
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	6 cut(s)	65, 181, 232, 313, 409, 613
HpyCH4III	ACNGT	3 cut(s)	10, 433, 502
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	4, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	21
HspAI	GCGC	3 cut(s)	352, 447, 524
Kpn2I	TCCGGA	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	54, 122, 154, 537
LmnI	GCTCC	4 cut(s)	19, 349, 463, 523
Lsp1109I	GCAGC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	293, 317
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	74, 101, 614
MalI	GATC	4 cut(s)	56, 124, 156, 539
MboI	GATC	4 cut(s)	54, 122, 154, 537
MboII	GAAGA	3 cut(s)	166, 169, 332
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	2 cut(s)	216, 234
MlyI	GAGTC	3 cut(s)	263, 406, 538
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	6 cut(s)	76, 184, 241, 244, 375, 390
MroI	TCCGGA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	4 cut(s)	120, 273, 444, 521
MspR9I	CCNGG	2 cut(s)	407, 551
MvaI	CCWGG	2 cut(s)	407, 551
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	351
NdeII	GATC	4 cut(s)	54, 122, 154, 537
NlaIV	GGNNCC	3 cut(s)	277, 420, 548
NmuCI	GTSAC	3 cut(s)	74, 101, 614
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	468
PleI	GAGTC	3 cut(s)	263, 405, 537
PpsI	GAGTC	3 cut(s)	263, 405, 537
PpuMI	RGGWCCY	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	405, 549
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	405, 549
PspN4I	GGNNCC	3 cut(s)	277, 420, 548
PspPI	GGNCC	2 cut(s)	418, 553
PspPPI	RGGWCCY	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	4 cut(s)	54, 122, 154, 537
Sau96I	GGNCC	2 cut(s)	418, 553
SchI	GAGTC	3 cut(s)	263, 406, 538
ScrFI	CCNGG	2 cut(s)	407, 551
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	216, 234
SsiI	CCGC	2 cut(s)	345, 560
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	293, 317
StyD4I	CCNGG	2 cut(s)	405, 549
TaaI	ACNGT	3 cut(s)	10, 433, 502
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	5 cut(s)	30, 204, 267, 311, 536
TasI	AATT	2 cut(s)	216, 234
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseFI	GTSAC	3 cut(s)	74, 101, 614
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	3 cut(s)	74, 101, 614
TspDTI	ATGAA	1 cut(s)	33
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	2 cut(s)	293, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.