Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

33941331 .. 33942656

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAGCACTAGCAACAACAGCATTTGCACTCTTCCTTCTTTGTGTCTCTGATTTCTCTTCGGTCTCCGCTAAAGGGGGATTCACCATTGACCTAATTCACCATGGAAAGTTTTCGTATTGCTTGGTCCCTTTTGGCTCGGAAGGTAACCAAACAAGCAAGTTGAACTTTGGTGATGATGCTGGGGTTTCCGGCTCTGGCGTTGTGTCCACTCCCATTGTCCAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACGAAAATTCCCTTCTCATCATCATCTTCAGCCTCTGGTGAGGGCAACATTATAATTGACTCTGGCACCACGCTAACCATACTGGAGCAGTTCTCCTACTTGGAGCTAGAAAAAGCAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAGGGTCCCTCAGATTCCAATATCTCTTTGCTATAAGGCATCCAAGGATTTGAAGGTGCCAAATATTACTGTGCATTTCAGTGGTGCAGATGTGAAGTTGGAGCCAAATAACATCTTTATTAGGGTGAGCGACGAGGCTGTGTGCTTTCCATTTGTTCCGTCGCAGAGTATTTCGATCTATGGGAACCTAGCCCAGGCGGGATTCTTGGTGGGATATGACCTTAAGAAGAAGACTGTGTCCTTCAAGCCAACTGACTGCACCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

232

Amino Acids

24.86

Weight (kDa)

5.92

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	46 - 224	6.3e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	83 - 225	3.8e-27	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AasI	GACNNNNNNGTC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	347, 484
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	426
AciI	CCGC	3 cut(s)	69, 417, 626
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	75, 622
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	166, 481, 673
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	52, 70
AlwNI	CAGNNNCTG	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	127, 433
AsuHPI	GGTGA	5 cut(s)	76, 92, 185, 332, 565
AvaII	GGWCC	2 cut(s)	127, 433
BanI	GGYRCC	2 cut(s)	347, 484
BbsI	GAAGAC	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	52, 70
BfaI	CTAG	3 cut(s)	11, 389, 617
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	623
Bme18I	GGWCC	2 cut(s)	127, 433
BmgT120I	GGNCC	2 cut(s)	127, 433
BmiI	GGNNCC	7 cut(s)	129, 349, 434, 435, 486, 531, 614
BmrFI	CCNGG	1 cut(s)	623
BmsI	GCATC	2 cut(s)	169, 476
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	4 cut(s)	359, 391, 421, 453
BpmI	CTGGAG	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	103, 471, 621, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 622
Bse1I	ACTGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	4 cut(s)	103, 471, 621, 690
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	75, 622
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	2 cut(s)	534, 670
Bsh1236I	CGCG	1 cut(s)	426
BshNI	GGYRCC	2 cut(s)	347, 484
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	113, 419
BslI	CCNNNNNNNGG	2 cut(s)	75, 622
BsmAI	GTCTC	2 cut(s)	52, 70
BsmFI	GGGAC	2 cut(s)	113, 419
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	226, 603
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	3 cut(s)	69, 417, 626
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	7 cut(s)	129, 349, 434, 435, 486, 531, 614
BspT107I	GGYRCC	2 cut(s)	347, 484
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	4 cut(s)	103, 471, 621, 690
BssMI	GATC	2 cut(s)	226, 603
BssT1I	CCWWGG	3 cut(s)	103, 471, 690
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	2 cut(s)	499, 664
Bst6I	CTCTTC	2 cut(s)	38, 64
BstAFI	CTTAAG	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	467
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	229, 606
BstMAI	GTCTC	2 cut(s)	52, 70
BstMBI	GATC	2 cut(s)	226, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 423
BstNI	CCWGG	1 cut(s)	623
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	127, 433
CseI	GACGC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	9 cut(s)	138, 195, 266, 314, 388, 532, 566, 620, 676
CviKI_1	RGCY	9 cut(s)	138, 195, 266, 314, 388, 532, 566, 620, 676
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	228, 605
DpnII	GATC	2 cut(s)	226, 603
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	38, 64
EarI	CTCTTC	2 cut(s)	38, 64
Eco130I	CCWWGG	3 cut(s)	103, 471, 690
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	127, 433
Eco57I	CTGAAG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	3 cut(s)	103, 471, 690
ErhI	CCWWGG	3 cut(s)	103, 471, 690
FaeI	CATG	1 cut(s)	107
FaiI	YATR	7 cut(s)	105, 269, 335, 362, 462, 609, 645
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	113, 419
FatI	CATG	1 cut(s)	103
FauI	CCCGC	2 cut(s)	410, 619
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	11, 389, 617
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	386
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	277, 403
HindII	GTYRAC	2 cut(s)	277, 403
HinfI	GANTC	4 cut(s)	81, 341, 442, 630
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	5 cut(s)	76, 92, 185, 332, 565
Hpy166II	GTNNAC	3 cut(s)	210, 277, 403
Hpy188I	TCNGA	3 cut(s)	52, 142, 441
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	210, 277, 403
Hpy99I	CGWCG	3 cut(s)	278, 563, 592
HpyAV	CCTTC	6 cut(s)	47, 137, 253, 304, 475, 679
HpyCH4III	ACNGT	2 cut(s)	499, 664
HpyCH4V	TGCA	4 cut(s)	29, 502, 515, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 423
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	424
KflI	GGGWCCC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	226, 603
LmnI	GCTCC	4 cut(s)	367, 385, 421, 529
LpnPI	CCDG	8 cut(s)	168, 183, 205, 303, 330, 350, 608, 635
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	169, 476
MaeI	CTAG	3 cut(s)	11, 389, 617
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	228, 605
MboI	GATC	2 cut(s)	226, 603
MboII	GAAGA	7 cut(s)	25, 51, 238, 241, 300, 667, 670
MluCI	AATT	3 cut(s)	96, 288, 336
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	6 cut(s)	256, 316, 325, 423, 447, 556
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	507
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	623
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 423
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	226, 603
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	7 cut(s)	129, 349, 434, 435, 486, 531, 614
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	81, 442, 630
PflFI	GACNNNGTC	1 cut(s)	664
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	621
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	7 cut(s)	129, 349, 434, 435, 486, 531, 614
PspPI	GGNCC	2 cut(s)	127, 433
PspPPI	RGGWCCY	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	664
RseI	CAYNNNNRTG	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	226, 603
Sau96I	GGNCC	2 cut(s)	127, 433
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	623
SetI	ASST	9 cut(s)	96, 148, 245, 390, 411, 486, 618, 651, 696
SfaNI	GCATC	2 cut(s)	169, 476
SinI	GGWCC	2 cut(s)	127, 433
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	96, 288, 336
SsiI	CCGC	3 cut(s)	69, 417, 626
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	3 cut(s)	11, 389, 617
StyD4I	CCNGG	1 cut(s)	621
StyI	CCWWGG	3 cut(s)	103, 471, 690
TaaI	ACNGT	2 cut(s)	499, 664
TaqI	TCGA	2 cut(s)	276, 602
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	96, 288, 336
TfiI	GAWTC	3 cut(s)	81, 442, 630
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	664
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	127, 433
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	3 cut(s)	11, 389, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.