MD14G1073700.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001618
Physical Location & Seq
Reverse (-)
8162469 .. 8162741
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1073700.v1.1.491

Sequence Viewer

Length: 273 bp
ATGACACTTTTACTAGAAGACTTTTACAATGAGTTGGAATTAACCATGAGTAAGGCTATAATACTAAAACATTTAATTGGTGAGTTCCTCGACCAAGGGCTTTGCTACAACACAACACCGGTTATCAAAGCTCCGATAATCACTGTGCATTTTAATTGTGCAAATGTCAAGTTAAAAGCTTTGAATACCTTCATGAGGATGTCGACGGATATTGTTTGCTTTGCTTTTGCAACGAGTCCGTTAAACGTTTTCATTTTTGGTAACATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

6.02

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 2 - 88 3e-07 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 203
AclI AACGTT 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 195
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 2 cut(s) 131, 179
AluI AGCT 2 cut(s) 131, 179
AsiGI ACCGGT 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 24
BfaI CTAG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 195
BshTI ACCGGT 1 cut(s) 118
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 118
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 3 cut(s) 46, 193, 265
CviJI RGCY 4 cut(s) 56, 100, 131, 179
CviKI_1 RGCY 4 cut(s) 56, 100, 131, 179
Eco130I CCWWGG 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 49, 196, 268
FaiI YATR 5 cut(s) 47, 59, 194, 266, 271
FatI CATG 3 cut(s) 45, 192, 264
FblI GTMKAC 1 cut(s) 203
FokI GGATG 1 cut(s) 211
FspBI CTAG 1 cut(s) 14
HapII CCGG 1 cut(s) 119
Hin1II CATG 3 cut(s) 49, 196, 268
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 148, 161, 230
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 49, 196, 268
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 1 cut(s) 132
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 260
MboII GAAGA 1 cut(s) 29
MluCI AATT 3 cut(s) 38, 75, 154
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 2 cut(s) 98, 189
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 5 cut(s) 41, 74, 153, 173, 242
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 1 cut(s) 119
NlaIII CATG 3 cut(s) 49, 196, 268
PagI TCATGA 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 118
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 202
SaqAI TTAA 5 cut(s) 41, 74, 153, 173, 242
SchI GAGTC 1 cut(s) 244
SetI ASST 4 cut(s) 133, 181, 191, 249
SgeI CNNG 8 cut(s) 26, 58, 101, 107, 131, 181, 205, 246
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 3 cut(s) 38, 75, 154
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 90, 203
TasI AATT 3 cut(s) 38, 75, 154
Tru1I TTAA 5 cut(s) 41, 74, 153, 173, 242
Tru9I TTAA 5 cut(s) 41, 74, 153, 173, 242
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 181, 241
TspGWI ACGGA 2 cut(s) 221, 228
TspRI CASTG 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.