Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

33391327 .. 33393057

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTCATTCACCTTGTTCAAGATGGAAAGTTTTCATATTGCTTGATCCCTTTTGCCTCGGAAGGTGACCAAACAAGCAAGTTGAACTTTGGTGATAATGCTGTGGTTTCCGGATCTGGCGTTCTTTCCACTCCCATTGTCAAAGATCAAACCCGAAAAACCTTCTTCTTCTTGACATTGGAGGCTATAAGCGTCGACAACACAAAAATTCCCTTCTCATCCTCAATTTCAGGCTCTGGTGAGGGCAACATTATAATCGACTCCGGCACCACATTAACCATACTAGAGCAGTCCTTCTACTCGAAGCTAGAAGAAGCAGTTGGCAAGGTTGTCGGCGGGGTGCGCGTGATCGATCCTCTGATTGGAATACCTCTTTGCTTTAAGGTGAGTCTATCCCAGGATTTGAAGGTCCCAAATATTACTGTACATTTCACTGGCGCTGATGTGAAGTTGGAGCAGCAGAACACTTTTGTTAGGGTGAGCGATGATACTGTGTGCTTTGCCTTTGCTCCGGCGCAGAGTCTTTCGATCTATGGGAACCTGGCCCAAGCGGGTTTCTTGGTGGGATATGACCTTAAGGGCAAGGCTGTGTCCTTCAAGCCTAGTGACTGCACCAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0010310 GO:0010337 GO:0010565 GO:0010817 GO:0016787 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0032350 GO:0042742 GO:0043170 GO:0043207 GO:0044238 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0062012 GO:0065007 GO:0065008 GO:0070001 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

207

Amino Acids

22.21

Weight (kDa)

5.35

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	19 - 199	1.2e-10	Eukaryotic aspartyl protease
TAXi_C	PF14541	56 - 200	1.3e-26	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	2 cut(s)	336, 551
AclWI	GGATC	3 cut(s)	40, 121, 347
AcsI	RAATTY	1 cut(s)	207
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflII	CTTAAG	1 cut(s)	575
AgsI	TTSAA	4 cut(s)	20, 85, 406, 598
AjnI	CCWGG	2 cut(s)	396, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
AlwI	GGATC	3 cut(s)	40, 121, 347
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	3 cut(s)	345, 440, 517
AspS9I	GGNCC	2 cut(s)	409, 544
AsuHPI	GGTGA	5 cut(s)	77, 104, 251, 397, 490
AvaII	GGWCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	2 cut(s)	398, 542
BfaI	CTAG	3 cut(s)	284, 308, 603
BfoI	RGCGCY	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	575
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	398, 542
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	409, 544
BmiI	GGNNCC	3 cut(s)	268, 411, 539
BmrFI	CCNGG	2 cut(s)	398, 542
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	57, 396
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	439
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	398, 542
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	57, 396
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	545
BshNI	GGYRCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	3 cut(s)	111, 264, 512
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	545
Bsp13I	TCCGGA	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
BspACI	CCGC	2 cut(s)	336, 551
BspANI	GGCC	1 cut(s)	545
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	268, 411, 539
BspPI	GGATC	3 cut(s)	40, 121, 347
BspT107I	GGYRCC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	575
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	57, 396
BssMI	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
Bst2UI	CCWGG	2 cut(s)	398, 542
Bst4CI	ACNGT	2 cut(s)	424, 493
BstAFI	CTTAAG	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	424
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	345, 440, 517
BstKTI	GATC	6 cut(s)	48, 116, 148, 351, 355, 531
BstMBI	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	2 cut(s)	398, 542
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	396, 540
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	3 cut(s)	345, 440, 517
Cfr13I	GGNCC	2 cut(s)	409, 544
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	425
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviJI	RGCY	6 cut(s)	185, 234, 307, 545, 587, 601
CviKI_1	RGCY	6 cut(s)	185, 234, 307, 545, 587, 601
CviQI	GTAC	1 cut(s)	425
DpnI	GATC	6 cut(s)	47, 115, 147, 350, 354, 530
DpnII	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
Eco47I	GGWCC	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	396, 540
FaiI	YATR	6 cut(s)	37, 188, 254, 281, 534, 570
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	395
FauI	CCCGC	2 cut(s)	329, 544
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	3 cut(s)	284, 308, 603
GlaI	GCGC	3 cut(s)	344, 439, 516
GluI	GCNGC	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	3 cut(s)	111, 264, 512
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	345, 440, 517
Hin6I	GCGC	3 cut(s)	343, 438, 515
HinP1I	GCGC	3 cut(s)	343, 438, 515
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	260, 388, 520
HpaII	CCGG	3 cut(s)	111, 264, 512
HphI	GGTGA	5 cut(s)	77, 104, 251, 397, 490
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	61, 360
Hpy188III	TCNNGA	3 cut(s)	20, 111, 172
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	56, 172, 223, 304, 400, 604
HpyCH4III	ACNGT	2 cut(s)	424, 493
HpyCH4V	TGCA	1 cut(s)	612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HspAI	GCGC	3 cut(s)	343, 438, 515
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
LmnI	GCTCC	2 cut(s)	454, 514
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	3 cut(s)	284, 308, 603
MaeIII	GTNAC	2 cut(s)	65, 605
MalI	GATC	6 cut(s)	47, 115, 147, 350, 354, 530
MboI	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
MboII	GAAGA	3 cut(s)	157, 160, 323
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	2 cut(s)	207, 225
MlyI	GAGTC	3 cut(s)	254, 397, 529
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	67, 175, 232, 235, 366, 381
MroI	TCCGGA	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	3 cut(s)	275, 381, 576
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	3 cut(s)	111, 264, 512
MspR9I	CCNGG	2 cut(s)	398, 542
MvaI	CCWGG	2 cut(s)	398, 542
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
NlaIV	GGNNCC	3 cut(s)	268, 411, 539
NmuCI	GTSAC	2 cut(s)	65, 605
PdmI	GAANNNNTTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	459
PleI	GAGTC	3 cut(s)	254, 396, 528
PpsI	GAGTC	3 cut(s)	254, 396, 528
PpuMI	RGGWCCY	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	396, 540
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	396, 540
PspN4I	GGNNCC	3 cut(s)	268, 411, 539
PspPI	GGNCC	2 cut(s)	409, 544
PspPPI	RGGWCCY	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	275, 381, 576
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	6 cut(s)	45, 113, 145, 348, 352, 528
Sau96I	GGNCC	2 cut(s)	409, 544
SchI	GAGTC	3 cut(s)	254, 397, 529
ScrFI	CCNGG	2 cut(s)	398, 542
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	2 cut(s)	207, 225
SsiI	CCGC	2 cut(s)	336, 551
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	3 cut(s)	284, 308, 603
StyD4I	CCNGG	2 cut(s)	396, 540
TaaI	ACNGT	2 cut(s)	424, 493
TaqI	TCGA	5 cut(s)	195, 258, 302, 351, 527
TasI	AATT	2 cut(s)	207, 225
TatI	WGTACW	1 cut(s)	424
Tru1I	TTAA	3 cut(s)	275, 381, 576
Tru9I	TTAA	3 cut(s)	275, 381, 576
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	65, 605
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	2 cut(s)	65, 605
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	31
XspI	CTAG	3 cut(s)	284, 308, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.