Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Forward (+)

19409087 .. 19410521

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTTGACTTACCTGTTTTTATCCATTGCAGTGTCACTGACAATATCTCTTACATCTATGTTCCCATTGTTTTCTCTTATACAAGCTAATAATCATGGTGAACGCGGTTTTACTGTGGAACTTATTCACCGAGACTCTCCATTTTCGCCTCTCTATAATCCTTTAGAAACACCTTCAAAACGTGTTGCAAATGCTTTACAGCGTTCCATCAACCATGCCAATAGGATCTTCAAGGCAACTTCATTCACATCAAACTGGCCGCAATCCACAATAATGCCCGACACCGGTGAATACCTCATGGAAATATCAATTGGTACGCCTCCAGTAGAAATCTTAGGCACTGCAGATACAGCCAGTGATCTTTCATGGATACAATGCATCCCTTGTAGAACCTCTTGCTCTAATGAAGAAATTTGCCATTACGAAATTACCTATGGGGATAAATCCTACAGCAATGGAATTGTTGCCACAGACACAATTACATTTGGCTCCACTACTAGGCAACCCTTTCGACTCCCTCAGATTATCTTGGGGTGTGGACACAACAACAGTGGGCTCTTTCGTGAAGCAGCATCTGGCATGATTGGACTTGCTCGGGGATCAGCCTCGCTTATATCCCAAATGGATTCTACGATTGATGGAAGATTCTCTTATTGTCAAGTGCATGCTATCTGGAAGCCAAACTCAACAGTCACAAGCAAAATGAACTTTGGCAGTAGAGCTGTGGTGTCCGGGTTCAGGGTAGTTTCAACCCCATTACTTACAGGCGACCCAAATATGTCATTCTATTTCCTAAGGTTGGAAGCAATGAACGTTGGACTTAAGAGATTCCAATATTATACCAATGGTACTGCTTCAACAAAACTAGGAAAGGGCAATATCATCATCGACGCGGGGACTACGCTGACATATTTACGGAAGGACGTTTACGGTAAATTGGAATCGGCAATGAGTGAGGCAATAAAATTAGAACGTGTAAATGATACTCAACATCATCTAAACCTTTGCTATAAAACCTATTCGGATATCAAAGCTCCGATAATCACAGCGCATTTTACTAGTGGTACAAAATTGAAGTTAAAAGCTTTAAATACATTCATGAGGTTGTCAAAGACTCTAGTCTGCTTTGCTTTCAAACCAACTCCAGTAGACATCGCTATTTTTGGCAACATGGCACAAAGGAATTTCTTCATAGGATACATCCTTAAGAAAGAGACTGTCTCTCCTTTAAGCCTACTGATTGTACCAAGCATTAATCACCAATATGCTAGGACGCATAAGTATCCGCGACTGGTTCTTTTCATAATAATGTACTCTCAACTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

442

Amino Acids

49.27

Weight (kDa)

9.31

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	97 - 407	4.3e-09	Eukaryotic aspartyl protease
TAXi_N	PF14543	98 - 132	8.9e-09	Xylanase inhibitor N-terminal
TAXi_N	PF14543	131 - 239	1.7e-24	Xylanase inhibitor N-terminal
TAXi_C	PF14541	263 - 407	6.5e-21	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1149
AccII	CGCG	3 cut(s)	105, 893, 1288
AciI	CCGC	4 cut(s)	105, 260, 893, 1286
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	2 cut(s)	233, 607
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	411, 1183
AfaI	GTAC	5 cut(s)	316, 850, 1066, 1245, 1313
AfiI	CCNNNNNNNGG	4 cut(s)	284, 498, 738, 799
AflII	CTTAAG	2 cut(s)	821, 1205
AflIII	ACRYGT	2 cut(s)	181, 973
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	6 cut(s)	177, 232, 750, 858, 1075, 1135
AhlI	ACTAGT	1 cut(s)	1058
AjuI	GAANNNNNNNTTGG	4 cut(s)	212, 244, 294, 326
AluBI	AGCT	4 cut(s)	86, 722, 1034, 1085
AluI	AGCT	4 cut(s)	86, 722, 1034, 1085
Alw26I	GTCTC	3 cut(s)	126, 1208, 1225
AlwI	GGATC	2 cut(s)	233, 607
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	2 cut(s)	411, 1183
AseI	ATTAAT	1 cut(s)	1254
AsiGI	ACCGGT	1 cut(s)	284
Asp700I	GAANNNNTTC	2 cut(s)	123, 1187
AspLEI	GCGC	1 cut(s)	1051
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	4 cut(s)	110, 119, 299, 1250
AvaI	CYCGRG	1 cut(s)	594
AxyI	CCTNAGG	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	215, 632
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciVI	GTATCC	3 cut(s)	363, 1190, 1293
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	3 cut(s)	126, 1208, 1225
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	5 cut(s)	498, 866, 1059, 1118, 1269
BfmI	CTRYAG	2 cut(s)	342, 448
BfrI	CTTAAG	2 cut(s)	821, 1205
BfuI	GTATCC	3 cut(s)	363, 1190, 1293
BisI	GCNGC	2 cut(s)	260, 570
BlsI	GCNGC	2 cut(s)	261, 571
Bme1390I	CCNGG	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	2 cut(s)	387, 581
BoxI	GACNNNNGTC	1 cut(s)	1118
BplI	GAGNNNNNCTC	2 cut(s)	1205, 1237
BpmI	CTGGAG	2 cut(s)	306, 1128
BpuMI	CCSGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	1207, 1237
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 498, 738, 799
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	5 cut(s)	260, 323, 354, 1145, 1296
Bse21I	CCTNAGG	1 cut(s)	794
Bse3DI	GCAATG	4 cut(s)	24, 460, 813, 954
BseGI	GGATG	2 cut(s)	378, 1200
BseLI	CCNNNNNNNGG	4 cut(s)	284, 498, 738, 799
BseMI	GCAATG	4 cut(s)	24, 460, 813, 954
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	5 cut(s)	260, 323, 354, 1145, 1296
BseXI	GCAGC	1 cut(s)	581
Bsh1236I	CGCG	3 cut(s)	105, 893, 1288
BshFI	GGCC	1 cut(s)	259
BshTI	ACCGGT	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	285, 732
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	4 cut(s)	284, 498, 738, 799
BsmAI	GTCTC	3 cut(s)	126, 1208, 1225
BsmFI	GGGAC	1 cut(s)	910
BsnI	GGCC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	225, 358, 599
BspACI	CCGC	4 cut(s)	105, 260, 893, 1286
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	3 cut(s)	105, 893, 1288
BspHI	TCATGA	1 cut(s)	1098
BspLI	GGNNCC	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	233, 607
BspTI	CTTAAG	2 cut(s)	821, 1205
BsrDI	GCAATG	4 cut(s)	24, 460, 813, 954
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	5 cut(s)	260, 323, 354, 1145, 1296
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	3 cut(s)	225, 358, 599
Bst4CI	ACNGT	5 cut(s)	115, 551, 691, 932, 1219
BstAFI	CTTAAG	2 cut(s)	821, 1205
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	334, 519, 794
BstF5I	GGATG	2 cut(s)	378, 1200
BstFNI	CGCG	3 cut(s)	105, 893, 1288
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	3 cut(s)	228, 361, 602
BstMAI	GTCTC	3 cut(s)	126, 1208, 1225
BstMBI	GATC	3 cut(s)	225, 358, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	668
BstPAI	GACNNNNGTC	1 cut(s)	1118
BstSCI	CCNGG	1 cut(s)	731
BstSFI	CTRYAG	2 cut(s)	342, 448
BstUI	CGCG	3 cut(s)	105, 893, 1288
BstV1I	GCAGC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	794
BsuI	GTATCC	3 cut(s)	363, 1190, 1293
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	1138
BtsCI	GGATG	2 cut(s)	378, 1200
BtsI	GCAGTG	2 cut(s)	36, 339
BtsIMutI	CAGTG	5 cut(s)	35, 36, 339, 361, 556
Cac8I	GCNNGC	1 cut(s)	666
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	1098
CfoI	GCGC	1 cut(s)	1051
Cfr10I	RCCGGY	1 cut(s)	284
CseI	GACGC	2 cut(s)	899, 1282
Csp6I	GTAC	5 cut(s)	315, 849, 1065, 1244, 1312
CspAI	ACCGGT	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	8 cut(s)	95, 215, 298, 366, 580, 665, 1099, 1171
CviQI	GTAC	5 cut(s)	315, 849, 1065, 1244, 1312
DdeI	CTNAG	3 cut(s)	334, 519, 794
DpnI	GATC	3 cut(s)	227, 360, 601
DpnII	GATC	3 cut(s)	225, 358, 599
DraI	TTTAAA	1 cut(s)	1089
EaeI	YGGCCR	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	1027
Eco81I	CCTNAGG	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	1027
EcoT22I	ATGCAT	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	8 cut(s)	98, 218, 301, 369, 583, 668, 1102, 1174
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	8 cut(s)	94, 214, 297, 365, 579, 664, 1098, 1170
FauI	CCCGC	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	2 cut(s)	260, 570
FokI	GGATG	2 cut(s)	365, 1187
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	260, 570
FspBI	CTAG	5 cut(s)	498, 866, 1059, 1118, 1269
GlaI	GCGC	1 cut(s)	1050
GluI	GCNGC	2 cut(s)	260, 570
GsuI	CTGGAG	2 cut(s)	306, 1128
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	285, 732
HgaI	GACGC	2 cut(s)	899, 1282
HhaI	GCGC	1 cut(s)	1051
Hin1II	CATG	8 cut(s)	98, 218, 301, 369, 583, 668, 1102, 1174
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	7 cut(s)	134, 513, 626, 645, 828, 941, 1114
HpaII	CCGG	2 cut(s)	285, 732
HphI	GGTGA	4 cut(s)	110, 119, 299, 1250
Hpy166II	GTNNAC	5 cut(s)	6, 101, 539, 928, 1150
Hpy188I	TCNGA	3 cut(s)	522, 1024, 1038
Hpy188III	TCNNGA	3 cut(s)	563, 673, 1099
Hpy8I	GTNNAC	5 cut(s)	6, 101, 539, 928, 1150
Hpy99I	CGWCG	1 cut(s)	893
HpyAV	CCTTC	2 cut(s)	183, 913
HpyCH4III	ACNGT	5 cut(s)	115, 551, 691, 932, 1219
HpyCH4IV	ACGT	4 cut(s)	181, 813, 924, 973
HpyCH4V	TGCA	5 cut(s)	29, 188, 344, 378, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	334, 519, 794
HpySE526I	ACGT	4 cut(s)	181, 813, 924, 973
Hsp92II	CATG	8 cut(s)	98, 218, 301, 369, 583, 668, 1102, 1174
HspAI	GCGC	1 cut(s)	1049
Kzo9I	GATC	3 cut(s)	225, 358, 599
LmnI	GCTCC	2 cut(s)	494, 1039
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	2 cut(s)	387, 581
MaeI	CTAG	5 cut(s)	498, 866, 1059, 1118, 1269
MaeII	ACGT	4 cut(s)	181, 813, 924, 973
MaeIII	GTNAC	2 cut(s)	33, 691
MalI	GATC	3 cut(s)	227, 360, 601
MboI	GATC	3 cut(s)	225, 358, 599
MboII	GAAGA	4 cut(s)	220, 419, 654, 1180
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	9 cut(s)	309, 411, 426, 459, 477, 935, 965, 1070, 1183
MlyI	GAGTC	3 cut(s)	128, 507, 1108
MmeI	TCCRAC	2 cut(s)	780, 796
MnlI	CCTC	8 cut(s)	159, 305, 330, 403, 528, 616, 949, 1095
Mph1103I	ATGCAT	1 cut(s)	380
MroXI	GAANNNNTTC	2 cut(s)	123, 1187
MseI	TTAA	7 cut(s)	822, 1079, 1088, 1206, 1229, 1254, 1327
MslI	CAYNNNNRTG	4 cut(s)	29, 272, 1263, 1307
MspCI	CTTAAG	2 cut(s)	821, 1205
MspI	CCGG	2 cut(s)	285, 732
MspR9I	CCNGG	1 cut(s)	733
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	3 cut(s)	105, 893, 1288
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	733
NdeII	GATC	3 cut(s)	225, 358, 599
NlaIII	CATG	8 cut(s)	98, 218, 301, 369, 583, 668, 1102, 1174
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	33, 691
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PagI	TCATGA	1 cut(s)	1098
PdmI	GAANNNNTTC	2 cut(s)	123, 1187
PfeI	GAWTC	4 cut(s)	626, 645, 828, 941
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	261, 571
PleI	GAGTC	3 cut(s)	128, 507, 1108
PpsI	GAGTC	3 cut(s)	128, 507, 1108
PshAI	GACNNNNGTC	1 cut(s)	1118
PshBI	ATTAAT	1 cut(s)	1254
Psp1406I	AACGTT	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	5 cut(s)	316, 850, 1066, 1245, 1313
RsaNI	GTAC	5 cut(s)	315, 849, 1065, 1244, 1312
RseI	CAYNNNNRTG	4 cut(s)	29, 272, 1263, 1307
SaqAI	TTAA	7 cut(s)	822, 1079, 1088, 1206, 1229, 1254, 1327
SatI	GCNGC	2 cut(s)	260, 570
Sau3AI	GATC	3 cut(s)	225, 358, 599
SchI	GAGTC	3 cut(s)	128, 507, 1108
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	387, 581
SfcI	CTRYAG	2 cut(s)	342, 448
SgrAI	CRCCGGYG	1 cut(s)	284
SmiMI	CAYNNNNRTG	4 cut(s)	29, 272, 1263, 1307
SmlI	CTYRAG	2 cut(s)	821, 1205
SmoI	CTYRAG	2 cut(s)	821, 1205
SpeI	ACTAGT	1 cut(s)	1058
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	9 cut(s)	309, 411, 426, 459, 477, 935, 965, 1070, 1183
SsiI	CCGC	4 cut(s)	105, 260, 893, 1286
SspI	AATATT	1 cut(s)	836
SspMI	CTAG	5 cut(s)	498, 866, 1059, 1118, 1269
StyD4I	CCNGG	1 cut(s)	731
TaaI	ACNGT	5 cut(s)	115, 551, 691, 932, 1219
TaiI	ACGT	4 cut(s)	184, 816, 927, 976
TaqI	TCGA	2 cut(s)	511, 888
TasI	AATT	9 cut(s)	309, 411, 426, 459, 477, 935, 965, 1070, 1183
TatI	WGTACW	1 cut(s)	1311
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	4 cut(s)	626, 645, 828, 941
Tru1I	TTAA	7 cut(s)	822, 1079, 1088, 1206, 1229, 1254, 1327
Tru9I	TTAA	7 cut(s)	822, 1079, 1088, 1206, 1229, 1254, 1327
TscAI	CASTG	5 cut(s)	36, 42, 346, 361, 556
TseFI	GTSAC	2 cut(s)	33, 691
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	33, 691
TspDTI	ATGAA	8 cut(s)	231, 354, 420, 719, 824, 1087, 1180, 1291
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	5 cut(s)	36, 42, 346, 361, 556
Vha464I	CTTAAG	2 cut(s)	821, 1205
VspI	ATTAAT	1 cut(s)	1254
XapI	RAATTY	2 cut(s)	411, 1183
XceI	RCATGY	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	1149
XmnI	GAANNNNTTC	2 cut(s)	123, 1187
XspI	CTAG	5 cut(s)	498, 866, 1059, 1118, 1269
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.