RchiOBHm_Chr1g0342861

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
34650455 .. 34651761
1307 bp
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UTR
Exon/CDS
Intron
PRQ56946

Sequence Viewer

Length: 1242 bp
ATGGCAGCACTAGCAACAACAGCATTTGCACTCTTCCTTCTTTGTGTCTCTGATTTCTCTTCGGTCTCCGCTAAAGGGGGATTCACCATTGACTTAATTCACCGTGACTCGCCTCACTCTCCCTTTTACAATCCTTCAGAAACTCCATCCCAACGCTTGAAGAATGCCTTTTGCCGTTCCATAAGCCGACTCAACCATTTCAGTCCAACAGCTTCCTCTTCAGTGGCTCAGCCTAACCAGGCCGAGTCCACTATAACCAACAACAACGGCGATTACCTTATGGAGTTATCAGTTGGAACACCTCCATTTCCGATCAAGGCCATCGCCGACACCGGCAGTGACCTCATCTGGACGCAGTGCGAGCCTTGTGTTGATTGTTACACGCAAACCGATCCTATTTTTGACCCCTCAAAATCGTCTACTTACAGAACCATTCCTTGCTCTTCAGACCAATGCACTGAACTAAAGGGCAGGTGCCCCGCCGAGGGGAGTGGTTCCGGTTCGGCTTGCCAATATAAAGTGAGCTACGGTGATCAGTCACACACAATCGGAGACATTGCGGTCGACACTCTAACCCTAACTTCCACTACCGGGAATAACGTTTCGTTTCCGAAAACAATGGCCACACCCGCCATGACAATGCTGGAACCTTTGACAAAAAAGGATGGAAAGTTTTCGTATTGCTTGGTCCCTTTTGGCTCGGAAGGTAACCAAACAAGCAAGTTGAACTTTGGTGATGATGCTGGGGTTTTGGGCTCTGGCGTTGTGTCCACTCCCATTGTCCAAGATCAAACCCGAAAAACGTTCTTCTTCTTGACTTTGGAGGCTATAAGCGTCAACAACACGAAAATTCCCTTCTCATCATCATCTTCAGCCTCTGGTGAGGGCAACATTATAATTGACTCTGGCACCACGTTAACCATACTGGAGCAGTTCTCCTACTTGGAGCTAGAAAAAGCAGTTGACAAGGTTGTCGGCGGGGAGCGCGTGAGGGTCCCTCAGATTCCAATATCTCTTTGCTATAAGGCATCCAAGGATTTGAAGGTACCAAATATTACTGTGCATTTCAGTGGTGCAGATGTGAAGTTGGAGCCAAATAACATCTTTATTAGGGTGAGCGACGAGGCTGTGTGCTTTGCATTTGTTCCGTCGCAGAGTATTTCGATCTATGGGAACCTAGCCCAGGCGGGATTCTTGGTGGGATATGACCTTAAGAAGAAGACTGTCCTTCAAGCCAACTGA

Protein Analysis

413

Amino Acids

44.3

Weight (kDa)

5.34

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 92 - 208 1.7e-35 Xylanase inhibitor N-terminal
Asp PF00026 92 - 144 6.3e-06 Eukaryotic aspartyl protease
Asp PF00026 234 - 410 1.8e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 270 - 409 2e-26 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
AarI CACCTGC 1 cut(s) 462
AasI GACNNNNNNGTC 2 cut(s) 560, 971
Acc36I ACCTGC 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 1045
AccB1I GGYRCC 3 cut(s) 474, 908, 1045
AccI GTMKAC 2 cut(s) 419, 564
AccII CGCG 1 cut(s) 987
AciI CCGC 6 cut(s) 69, 480, 560, 630, 978, 1187
AclI AACGTT 2 cut(s) 600, 803
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 849
AcuI CTGAAG 4 cut(s) 120, 204, 429, 855
AfaI GTAC 1 cut(s) 1047
AfiI CCNNNNNNNGG 6 cut(s) 75, 484, 485, 486, 591, 1183
AflII CTTAAG 1 cut(s) 1211
AgsI TTSAA 4 cut(s) 160, 727, 1042, 1232
AjnI CCWGG 2 cut(s) 237, 1182
AluBI AGCT 3 cut(s) 212, 525, 949
AluI AGCT 3 cut(s) 212, 525, 949
Alw26I GTCTC 3 cut(s) 52, 70, 546
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 3 cut(s) 240, 318, 621
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 849
Asp700I GAANNNNTTC 1 cut(s) 673
Asp718I GGTACC 1 cut(s) 1045
AspLEI GCGC 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 688, 994
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 6 cut(s) 76, 92, 542, 746, 893, 1126
AvaII GGWCC 2 cut(s) 688, 994
BaeGI GKGCMC 1 cut(s) 479
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 3 cut(s) 474, 908, 1045
BanII GRGCYC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 1226
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 154, 329, 659
BceAI ACGGC 2 cut(s) 159, 283
BciT130I CCWGG 2 cut(s) 239, 1184
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 52, 70, 546
BfaI CTAG 3 cut(s) 11, 950, 1178
BfrI CTTAAG 1 cut(s) 1211
BfuAI ACCTGC 1 cut(s) 462
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 239, 592, 1184
Bme18I GGWCC 2 cut(s) 688, 994
BmgT120I GGNCC 2 cut(s) 688, 994
BmrFI CCNGG 3 cut(s) 239, 592, 1184
BmsI GCATC 2 cut(s) 730, 1037
BpiI GAAGAC 1 cut(s) 1226
BplI GAGNNNNNCTC 4 cut(s) 920, 952, 982, 1014
BpmI CTGGAG 1 cut(s) 947
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 483, 1032, 1182
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 6 cut(s) 75, 484, 485, 486, 591, 1183
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 930
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 239, 1184
BseDI CCNNGG 3 cut(s) 483, 1032, 1182
BseGI GGATG 3 cut(s) 146, 670, 1028
BseLI CCNNNNNNNGG 6 cut(s) 75, 484, 485, 486, 591, 1183
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 242, 1013
BseNI ACTGG 1 cut(s) 930
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 743
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 987
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 242, 320, 623
BshNI GGYRCC 3 cut(s) 474, 908, 1045
BsiEI CGRYCG 1 cut(s) 564
BsiSI CCGG 3 cut(s) 333, 498, 591
BslFI GGGAC 2 cut(s) 674, 980
BslI CCNNNNNNNGG 6 cut(s) 75, 484, 485, 486, 591, 1183
BsmAI GTCTC 3 cut(s) 52, 70, 546
BsmFI GGGAC 2 cut(s) 674, 980
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 3 cut(s) 242, 320, 623
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 479, 758
Bsp143I GATC 5 cut(s) 312, 391, 532, 787, 1164
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 6 cut(s) 69, 480, 560, 630, 978, 1187
BspANI GGCC 3 cut(s) 242, 320, 623
BspCNI CTCAG 2 cut(s) 241, 1012
BspFNI CGCG 1 cut(s) 987
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 448
BspT107I GGYRCC 3 cut(s) 474, 908, 1045
BspTI CTTAAG 1 cut(s) 1211
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 930
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 3 cut(s) 483, 1032, 1182
BssMI GATC 5 cut(s) 312, 391, 532, 787, 1164
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 2 cut(s) 239, 1184
Bst4CI ACNGT 4 cut(s) 104, 530, 1060, 1225
Bst6I CTCTTC 4 cut(s) 38, 64, 223, 448
BstAFI CTTAAG 1 cut(s) 1211
BstC8I GCNNGC 2 cut(s) 362, 508
BstDEI CTNAG 2 cut(s) 228, 999
BstEII GGTNACC 1 cut(s) 707
BstENI CCTNNNNNAGG 1 cut(s) 1181
BstF5I GGATG 3 cut(s) 146, 670, 1028
BstFNI CGCG 1 cut(s) 987
BstHHI GCGC 1 cut(s) 987
BstKTI GATC 5 cut(s) 315, 394, 535, 790, 1167
BstMAI GTCTC 3 cut(s) 52, 70, 546
BstMBI GATC 5 cut(s) 312, 391, 532, 787, 1164
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 361, 629, 984
BstNI CCWGG 2 cut(s) 239, 1184
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 237, 590, 1182
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 1 cut(s) 987
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 1226
BsuRI GGCC 3 cut(s) 242, 320, 623
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 3 cut(s) 146, 670, 1028
BtsI GCAGTG 2 cut(s) 343, 362
BtsIMutI CAGTG 5 cut(s) 228, 343, 362, 456, 1075
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 362, 508
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 1 cut(s) 987
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 688, 994
CseI GACGC 2 cut(s) 361, 823
Csp6I GTAC 1 cut(s) 1046
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 1 cut(s) 634
CviQI GTAC 1 cut(s) 1046
DdeI CTNAG 2 cut(s) 228, 999
DpnI GATC 5 cut(s) 314, 393, 534, 789, 1166
DpnII GATC 5 cut(s) 312, 391, 532, 787, 1164
DrdI GACNNNNNNGTC 2 cut(s) 560, 971
DseDI GACNNNNNNGTC 2 cut(s) 560, 971
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 4 cut(s) 38, 64, 223, 448
EarI CTCTTC 4 cut(s) 38, 64, 223, 448
Eco130I CCWWGG 1 cut(s) 1032
Eco24I GRGCYC 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 688, 994
Eco57I CTGAAG 4 cut(s) 120, 204, 429, 855
Eco91I GGTNACC 1 cut(s) 707
EcoNI CCTNNNNNAGG 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 994
EcoO65I GGTNACC 1 cut(s) 707
EcoRII CCWGG 2 cut(s) 237, 1182
EcoT14I CCWWGG 1 cut(s) 1032
EcoT38I GRGCYC 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 1 cut(s) 637
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 713, 745
FaqI GGGAC 2 cut(s) 674, 980
FatI CATG 1 cut(s) 633
FauI CCCGC 4 cut(s) 487, 637, 971, 1180
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 2 cut(s) 419, 564
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 133, 677, 1015
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 11, 950, 1178
GlaI GCGC 1 cut(s) 986
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 947
HaeIII GGCC 3 cut(s) 242, 320, 623
HapII CCGG 3 cut(s) 333, 498, 591
HgaI GACGC 2 cut(s) 361, 823
HhaI GCGC 1 cut(s) 987
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 1 cut(s) 985
HinP1I GCGC 1 cut(s) 985
HincII GTYRAC 4 cut(s) 565, 838, 918, 964
HindII GTYRAC 4 cut(s) 565, 838, 918, 964
HinfI GANTC 7 cut(s) 81, 107, 189, 245, 902, 1003, 1191
HpaI GTTAAC 1 cut(s) 918
HpaII CCGG 3 cut(s) 333, 498, 591
HphI GGTGA 6 cut(s) 76, 92, 542, 746, 893, 1126
Hpy166II GTNNAC 7 cut(s) 249, 420, 565, 771, 838, 918, 964
Hpy188I TCNGA 8 cut(s) 52, 139, 312, 448, 551, 612, 703, 1002
Hpy188III TCNNGA 2 cut(s) 349, 814
Hpy8I GTNNAC 7 cut(s) 249, 420, 565, 771, 838, 918, 964
Hpy99I CGWCG 2 cut(s) 1124, 1153
HpyAV CCTTC 6 cut(s) 47, 144, 698, 865, 1036, 1238
HpyCH4III ACNGT 4 cut(s) 104, 530, 1060, 1225
HpyCH4IV ACGT 3 cut(s) 600, 803, 914
HpyCH4V TGCA 5 cut(s) 29, 456, 1063, 1076, 1139
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 361, 629, 984
HpyF3I CTNAG 2 cut(s) 228, 999
HpySE526I ACGT 3 cut(s) 600, 803, 914
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 1 cut(s) 985
KflI GGGWCCC 1 cut(s) 994
KpnI GGTACC 1 cut(s) 1049
Ksp22I TGATCA 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 918
Kzo9I GATC 5 cut(s) 312, 391, 532, 787, 1164
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 4 cut(s) 928, 946, 982, 1090
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 730, 1037
MaeI CTAG 3 cut(s) 11, 950, 1178
MaeII ACGT 3 cut(s) 600, 803, 914
MaeIII GTNAC 5 cut(s) 104, 338, 377, 537, 707
MalI GATC 5 cut(s) 314, 393, 534, 789, 1166
MboI GATC 5 cut(s) 312, 391, 532, 787, 1164
MhlI GDGCHC 2 cut(s) 479, 758
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 3 cut(s) 96, 849, 897
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 4 cut(s) 101, 183, 254, 896
MmeI TCCRAC 3 cut(s) 230, 274, 1068
Mox20I TGGCCA 1 cut(s) 623
MroXI GAANNNNTTC 1 cut(s) 673
MscI TGGCCA 1 cut(s) 623
MseI TTAA 3 cut(s) 95, 917, 1212
MslI CAYNNNNRTG 2 cut(s) 638, 1068
Msp20I TGGCCA 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 1211
MspI CCGG 3 cut(s) 333, 498, 591
MspR9I CCNGG 3 cut(s) 239, 592, 1184
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 2 cut(s) 239, 1184
MvnI CGCG 1 cut(s) 987
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 361, 629, 984
NciI CCSGG 1 cut(s) 592
NdeII GATC 5 cut(s) 312, 391, 532, 787, 1164
NlaIII CATG 1 cut(s) 637
NmeAIII GCCGAG 2 cut(s) 268, 508
NmuCI GTSAC 3 cut(s) 104, 338, 537
PaqCI CACCTGC 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 448
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 81, 1003, 1191
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 4 cut(s) 101, 183, 253, 896
PpsI GAGTC 4 cut(s) 101, 183, 253, 896
PpuMI RGGWCCY 1 cut(s) 994
PsiI TTATAA 1 cut(s) 896
Psp1406I AACGTT 2 cut(s) 600, 803
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 2 cut(s) 237, 1182
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 2 cut(s) 237, 1182
PspPI GGNCC 2 cut(s) 688, 994
PspPPI RGGWCCY 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 878
RsaI GTAC 1 cut(s) 1047
RsaNI GTAC 1 cut(s) 1046
RseI CAYNNNNRTG 2 cut(s) 638, 1068
SalI GTCGAC 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 3 cut(s) 95, 917, 1212
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 312, 391, 532, 787, 1164
Sau96I GGNCC 2 cut(s) 688, 994
SchI GAGTC 4 cut(s) 101, 183, 254, 896
ScrFI CCNGG 3 cut(s) 239, 592, 1184
SduI GDGCHC 2 cut(s) 479, 758
SfaNI GCATC 2 cut(s) 730, 1037
SinI GGWCC 2 cut(s) 688, 994
SmiMI CAYNNNNRTG 2 cut(s) 638, 1068
SmlI CTYRAG 1 cut(s) 1211
SmoI CTYRAG 1 cut(s) 1211
Sse9I AATT 3 cut(s) 96, 849, 897
SsiI CCGC 6 cut(s) 69, 480, 560, 630, 978, 1187
SspI AATATT 1 cut(s) 1054
SspMI CTAG 3 cut(s) 11, 950, 1178
StyD4I CCNGG 3 cut(s) 237, 590, 1182
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 4 cut(s) 104, 530, 1060, 1225
TaiI ACGT 3 cut(s) 603, 806, 917
TaqI TCGA 2 cut(s) 564, 1163
TaqII GACCGA 1 cut(s) 52
TasI AATT 3 cut(s) 96, 849, 897
TfiI GAWTC 3 cut(s) 81, 1003, 1191
Tru1I TTAA 3 cut(s) 95, 917, 1212
Tru9I TTAA 3 cut(s) 95, 917, 1212
TscAI CASTG 5 cut(s) 228, 343, 362, 463, 1075
TseFI GTSAC 3 cut(s) 104, 338, 537
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 104, 338, 537
TspGWI ACGGA 1 cut(s) 1137
TspRI CASTG 5 cut(s) 228, 343, 362, 463, 1075
Vha464I CTTAAG 1 cut(s) 1211
VpaK11BI GGWCC 2 cut(s) 688, 994
XagI CCTNNNNNAGG 1 cut(s) 1181
XapI RAATTY 1 cut(s) 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmiI GTMKAC 2 cut(s) 419, 564
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 3 cut(s) 11, 950, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.