Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

34551472 .. 34552706

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTTGCGATTTTGAATAATCATTCTCTCCCCATTGCAATGGCATTAGCATTATCTGTTACCTATTTGTTGCATTTCTCTCTAGTACAAGCTGAACATAAGGGCGGCTTCAGCGTGAAGCTCATTCACCGCAACTCTCCGTTGTCTCCTTTCTACAATCCTTCAGAAACACCTTCGCAACGCGTGACAAATGCTTTGCAACGTTCCATCAACCGTGTCAATCTCTTCGGATCAACTAATTTGTTACCTTCATTAAACGATCCTGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCACTCCTCCCGTAGAAATCTCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCGTGCCTTGCAGCAGCTGTTACAAGCAAAAATCTCCGCTCTTTGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTTTTGCTCAGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCCTACAGCAATGGAATTGTCTCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCAATGTCCCTTATCTCCCAAATGGATTCTTCAATTGATGGGAAATTCTCCTACTGCCTTGTTCCAGCTTTTTCACCACTCAACTCTTCAAGCAAAATGAGCTTTGGTAATAATGCTGTGGTTTCTGGTGCCATGGTGGTTTCTACCCCATTACTTTCAGGAGACCTAAAATCTTTCTATTTCGTAAAGCTGGAAGCAATGAGTGTGGGACGCAAGAAATTGCAATACAACAGTACACTGATGCCAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTTTTACAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

342

Amino Acids

36.96

Weight (kDa)

8.31

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	98 - 341	2.7e-09	Eukaryotic aspartyl protease
TAXi_N	PF14543	99 - 271	1e-50	Xylanase inhibitor N-terminal
TAXi_C	PF14541	294 - 341	3.5e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	830
AccBSI	CCGCTC	1 cut(s)	418
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	105, 130, 416
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	6 cut(s)	238, 254, 419, 537, 682, 709
AcsI	RAATTY	2 cut(s)	433, 746
AcuI	CTGAAG	2 cut(s)	94, 147
AfaI	GTAC	3 cut(s)	87, 296, 937
AfiI	CCNNNNNNNGG	1 cut(s)	962
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	16, 377, 586, 735, 792
AjiI	CACGTC	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	955
AluBI	AGCT	9 cut(s)	92, 121, 356, 396, 597, 770, 804, 892, 953
AluI	AGCT	9 cut(s)	92, 121, 356, 396, 597, 770, 804, 892, 953
Alw26I	GTCTC	4 cut(s)	150, 566, 568, 858
AlwI	GGATC	6 cut(s)	238, 254, 419, 537, 682, 709
AlwNI	CAGNNNCTG	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	390, 393
ApoI	RAATTY	2 cut(s)	433, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsuHPI	GGTGA	2 cut(s)	119, 768
BaeGI	GKGCMC	1 cut(s)	645
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	402, 405
BccI	CCATC	3 cut(s)	215, 665, 734
BciT130I	CCWGG	1 cut(s)	957
BcoDI	GTCTC	4 cut(s)	150, 566, 568, 858
BfaI	CTAG	3 cut(s)	83, 357, 594
BfmI	CTRYAG	2 cut(s)	532, 547
BisI	GCNGC	3 cut(s)	106, 391, 394
BlsI	GCNGC	3 cut(s)	107, 392, 395
Bme1390I	CCNGG	1 cut(s)	957
BmgBI	CACGTC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	493, 832
BmrFI	CCNGG	1 cut(s)	957
BmsI	GCATC	1 cut(s)	933
BpmI	CTGGAG	1 cut(s)	939
Bpu10I	CCTNAGC	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	834
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse3DI	GCAATG	4 cut(s)	33, 45, 559, 906
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMI	GCAATG	4 cut(s)	33, 45, 559, 906
BseMII	CTCAG	2 cut(s)	351, 516
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	402, 405
Bsh1236I	CGCG	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	830
BslFI	GGGAC	3 cut(s)	694, 924, 1000
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	4 cut(s)	150, 566, 568, 858
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	3 cut(s)	694, 924, 1000
Bso31I	GGTCTC	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	3 cut(s)	105, 130, 416
BspCNI	CTCAG	2 cut(s)	350, 515
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	493, 832
BspPI	GGATC	6 cut(s)	238, 254, 419, 537, 682, 709
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	858
BsrBI	CCGCTC	1 cut(s)	418
BsrDI	GCAATG	4 cut(s)	33, 45, 559, 906
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	4 cut(s)	215, 610, 653, 935
Bst6I	CTCTTC	2 cut(s)	230, 793
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	337, 502, 598
BstDSI	CCRYGG	1 cut(s)	834
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	8 cut(s)	233, 262, 364, 427, 545, 579, 677, 704
BstMAI	GTCTC	4 cut(s)	150, 566, 568, 858
BstMBI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 353, 387, 801
BstNI	CCWGG	1 cut(s)	957
BstSCI	CCNGG	1 cut(s)	955
BstSFI	CTRYAG	2 cut(s)	532, 547
BstSLI	GKGCMC	1 cut(s)	645
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	402, 405
BstX2I	RGATCY	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	658, 938
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	300
CseI	GACGC	1 cut(s)	921
Csp6I	GTAC	3 cut(s)	86, 295, 936
CspCI	CAANNNNNGTGG	4 cut(s)	634, 669, 888, 923
CviAII	CATG	3 cut(s)	301, 369, 835
CviQI	GTAC	3 cut(s)	86, 295, 936
DdeI	CTNAG	3 cut(s)	337, 502, 598
DpnI	GATC	8 cut(s)	232, 261, 363, 426, 544, 578, 676, 703
DpnII	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
Eam1104I	CTCTTC	2 cut(s)	230, 793
EarI	CTCTTC	2 cut(s)	230, 793
Eco130I	CCWWGG	1 cut(s)	834
Eco31I	GGTCTC	1 cut(s)	858
Eco57I	CTGAAG	2 cut(s)	94, 147
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	834
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	3 cut(s)	304, 372, 838
FaiI	YATR	7 cut(s)	99, 302, 370, 534, 629, 836, 974
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	3 cut(s)	694, 924, 1000
FatI	CATG	3 cut(s)	300, 368, 834
Fnu4HI	GCNGC	3 cut(s)	106, 391, 394
Fsp4HI	GCNGC	3 cut(s)	106, 391, 394
FspBI	CTAG	3 cut(s)	83, 357, 594
GluI	GCNGC	3 cut(s)	106, 391, 394
GsuI	CTGGAG	1 cut(s)	939
HgaI	GACGC	1 cut(s)	921
Hin1II	CATG	3 cut(s)	304, 372, 838
HinfI	GANTC	4 cut(s)	266, 373, 728, 980
HphI	GGTGA	2 cut(s)	119, 768
Hpy166II	GTNNAC	2 cut(s)	656, 938
Hpy188I	TCNGA	5 cut(s)	166, 230, 283, 429, 505
Hpy188III	TCNNGA	4 cut(s)	263, 301, 339, 861
Hpy8I	GTNNAC	2 cut(s)	656, 938
HpyAV	CCTTC	4 cut(s)	171, 183, 258, 954
HpyCH4III	ACNGT	4 cut(s)	215, 610, 653, 935
HpyCH4IV	ACGT	2 cut(s)	202, 697
HpyCH4V	TGCA	6 cut(s)	38, 73, 199, 347, 390, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 353, 387, 801
HpyF3I	CTNAG	3 cut(s)	337, 502, 598
HpySE526I	ACGT	2 cut(s)	202, 697
Hsp92II	CATG	3 cut(s)	304, 372, 838
Kzo9I	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	2 cut(s)	402, 405
LweI	GCATC	1 cut(s)	933
MaeI	CTAG	3 cut(s)	83, 357, 594
MaeII	ACGT	2 cut(s)	202, 697
MaeIII	GTNAC	6 cut(s)	58, 184, 243, 398, 515, 1002
MalI	GATC	8 cut(s)	232, 261, 363, 426, 544, 578, 676, 703
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
MboII	GAAGA	6 cut(s)	217, 442, 518, 680, 723, 780
MfeI	CAATTG	2 cut(s)	312, 735
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	8 cut(s)	238, 312, 433, 558, 630, 735, 746, 920
MluI	ACGCGT	1 cut(s)	181
MnlI	CCTC	3 cut(s)	308, 333, 475
MseI	TTAA	2 cut(s)	254, 663
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	957
MunI	CAATTG	2 cut(s)	312, 735
MvaI	CCWGG	1 cut(s)	957
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	111, 353, 387, 801
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
NlaIII	CATG	3 cut(s)	304, 372, 838
NlaIV	GGNNCC	2 cut(s)	493, 832
NmuCI	GTSAC	2 cut(s)	184, 515
PagI	TCATGA	1 cut(s)	300
PfeI	GAWTC	4 cut(s)	266, 373, 728, 980
PfoI	TCCNGGA	1 cut(s)	955
PkrI	GCNGC	3 cut(s)	107, 392, 395
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	2 cut(s)	493, 832
PstNI	CAGNNNCTG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	3 cut(s)	87, 296, 937
RsaNI	GTAC	3 cut(s)	86, 295, 936
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	254, 663
SatI	GCNGC	3 cut(s)	106, 391, 394
Sau3AI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 701
ScrFI	CCNGG	1 cut(s)	957
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	1 cut(s)	933
SfcI	CTRYAG	2 cut(s)	532, 547
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	8 cut(s)	238, 312, 433, 558, 630, 735, 746, 920
SsiI	CCGC	3 cut(s)	105, 130, 416
SspMI	CTAG	3 cut(s)	83, 357, 594
StyD4I	CCNGG	1 cut(s)	955
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	4 cut(s)	215, 610, 653, 935
TaiI	ACGT	2 cut(s)	205, 700
TasI	AATT	8 cut(s)	238, 312, 433, 558, 630, 735, 746, 920
TatI	WGTACW	2 cut(s)	85, 935
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	266, 373, 728, 980
Tru1I	TTAA	2 cut(s)	254, 663
Tru9I	TTAA	2 cut(s)	254, 663
TscAI	CASTG	2 cut(s)	658, 945
TseFI	GTSAC	2 cut(s)	184, 515
TseI	GCWGC	2 cut(s)	390, 393
Tsp45I	GTSAC	2 cut(s)	184, 515
TspDTI	ATGAA	3 cut(s)	240, 317, 681
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	658, 945
XapI	RAATTY	2 cut(s)	433, 746
XspI	CTAG	3 cut(s)	83, 357, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.