Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001618

Physical Location & Seq

Genomic Coordinates Reverse (-)

29773619 .. 29775168

Gene Structure 1550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTTGCGATTTTGAATAATCATTCTCTCCCCATTGCAATGGCATTAGCATTATCTGTTACCTATTTGTTGCATTTCTCTCTAGTACAAGCTGACCATAAGGGCGGCTTCAGCGTGAAGCTCATTCACCGCAACTCTCCGTTGTCTCCTTTCTACAATCCTTCAGAAACACCTTCGCAATGCGTGACAAATGCTTTGCAACGTTGCATCAACCGTGTCAATCTCTTCGGATCAACTAATTTGTTACCTTCATTAAACGATCCTGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCACTCCTCCCGTAGAAATCTCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCGTGCCTTGCAGCAGCTGTTACAAGCAAAAATCTCCGCTCTTTGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTCTTGCTCAGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCCTACAGCAATGGAATTGTCTCAACAGAGACGATCACTTTCAACTCCACTAGCTTAGGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACACCTAAAATCTTTCTATTTCGTAAAGCTGGAAGCAATGAGTGTGGGACGCAAGAAATTGCAATACAACAGTACACTGATGCCAATAGCTCCAGGAAGGGGAAATATCATAGTTGATTCTGGGACTACACTAACAATGTTACCAAAGGACTTTTACAATAGGCTGGAATTGACAATGAGTAGGGCCATAAGATCAAAACGAGTAAGACACGCTAGTCGCTACTTAAGCCTTTGCTACAAGACCAAATCGGCTATCAAAGCTCCCATAATCACTGCACTTTTCACCGGTGCGGCTGTTAAGTGGAAAGCTTCGAACACTTTCATAAGAGTGTCAATGGATGTTGTAATTAATGCCATCTTTGGCAGTATGGCACAAACTAATTTCTTGATAGGCTATGACCTCAAGAAAGAGTCCATCTCTTTTAAGCCAACTGATTGCAGTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

381

Amino Acids

41.76

Weight (kDa)

9.28

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	99 - 235	8.4e-40	Xylanase inhibitor N-terminal
TAXi_C	PF14541	238 - 374	1.8e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64830 AT5G33340
fragaria_vesca	FvH4_7g07620 FvH4_7g07650 FvH4_7g07651
malus_domestica	MD02G1235000.v1.1 MD02G1235700.v1.1 MD07G1079900.v1.1 MD07G1080000.v1.1 MD14G1073600.v1.1 MD14G1073700.v1.1
prunus_persica	Prupe.2G103100_v2.0.a1 Prupe.7G050200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342781 RchiOBHm_Chr1g0342851 RchiOBHm_Chr1g0342861 RchiOBHm_Chr1g0343021 RchiOBHm_Chr1g0343031 RchiOBHm_Chr4g0401311
rosa_laevigata	RLG00000029117 RLG00000029193 RLG00000029194 RLG00000029196 RLG00000029198
rosa_roxburghii	Rroxscaffold_4G00313290
rosa_rugosa	Rorug01G0144700.1 Rorug01G0144800.1 Rorug01G0144900.1 Rorug01G0146000.1
rosa_samantha	Rh1AG161100 Rh1AG161300 Rh1AG161700 Rh1BG128300 Rh1BG128500 Rh1BG129200 Rh1BG129300 Rh1BG129400 Rh1CG150900 Rh1DG164600 Rh1DG164700 Rh1DG165900 Rh1DG166000 Rh1DG166100
rosa_wichuraiana	Rw1G013350 Rw1G013380 Rw1G013590 Rw1G013600 Rw1G013640 Rw1G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AasI	GACNNNNNNGTC	1 cut(s)	909
AccBSI	CCGCTC	1 cut(s)	418
AciI	CCGC	4 cut(s)	105, 130, 416, 986
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	5 cut(s)	238, 254, 419, 537, 682
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	94, 147
AfaI	GTAC	3 cut(s)	87, 296, 769
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflII	CTTAAG	1 cut(s)	919
AgeI	ACCGGT	1 cut(s)	980
AgsI	TTSAA	3 cut(s)	16, 377, 586
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	9 cut(s)	92, 121, 356, 396, 597, 724, 785, 956, 1004
AluI	AGCT	9 cut(s)	92, 121, 356, 396, 597, 724, 785, 956, 1004
Alw26I	GTCTC	3 cut(s)	150, 566, 568
AlwI	GGATC	5 cut(s)	238, 254, 419, 537, 682
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	879
ApeKI	GCWGC	2 cut(s)	390, 393
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AseI	ATTAAT	1 cut(s)	1044
AsiGI	ACCGGT	1 cut(s)	980
Asp700I	GAANNNNTTC	1 cut(s)	1013
AspS9I	GGNCC	1 cut(s)	879
AsuHPI	GGTGA	2 cut(s)	119, 970
AsuII	TTCGAA	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	645
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BbvI	GCAGC	2 cut(s)	402, 405
BccI	CCATC	3 cut(s)	665, 1058, 1118
BciT130I	CCWGG	1 cut(s)	789
BcoDI	GTCTC	3 cut(s)	150, 566, 568
BfaI	CTAG	4 cut(s)	83, 357, 594, 909
BfmI	CTRYAG	2 cut(s)	532, 547
BfrI	CTTAAG	1 cut(s)	919
BisI	GCNGC	4 cut(s)	106, 391, 394, 987
BlsI	GCNGC	4 cut(s)	107, 392, 395, 988
Bme1390I	CCNGG	1 cut(s)	789
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	2 cut(s)	216, 765
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	1007
BpuEI	CTTGAG	2 cut(s)	451, 1082
BsaWI	WCCGGW	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse118I	RCCGGY	1 cut(s)	980
Bse3DI	GCAATG	5 cut(s)	33, 45, 185, 559, 738
BseBI	CCWGG	1 cut(s)	789
BseGI	GGATG	1 cut(s)	1039
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	5 cut(s)	33, 45, 185, 559, 738
BseMII	CTCAG	2 cut(s)	351, 516
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	402, 405
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	1 cut(s)	881
BshTI	ACCGGT	1 cut(s)	980
BsiSI	CCGG	1 cut(s)	981
BslFI	GGGAC	2 cut(s)	756, 832
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	150, 566, 568
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	2 cut(s)	756, 832
BsnI	GGCC	1 cut(s)	881
Bsp119I	TTCGAA	1 cut(s)	1007
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
BspACI	CCGC	4 cut(s)	105, 130, 416, 986
BspANI	GGCC	1 cut(s)	881
BspCNI	CTCAG	2 cut(s)	350, 515
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	5 cut(s)	238, 254, 419, 537, 682
BspT104I	TTCGAA	1 cut(s)	1007
BspTI	CTTAAG	1 cut(s)	919
BsrBI	CCGCTC	1 cut(s)	418
BsrDI	GCAATG	5 cut(s)	33, 45, 185, 559, 738
BsrFI	RCCGGY	1 cut(s)	980
BssAI	RCCGGY	1 cut(s)	980
BssMI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	4 cut(s)	215, 610, 653, 767
Bst6I	CTCTTC	1 cut(s)	230
BstAFI	CTTAAG	1 cut(s)	919
BstBI	TTCGAA	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	337, 502, 598
BstF5I	GGATG	1 cut(s)	1039
BstKTI	GATC	8 cut(s)	233, 262, 364, 427, 545, 579, 677, 890
BstMAI	GTCTC	3 cut(s)	150, 566, 568
BstMBI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 353, 387, 921, 953
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	787
BstSFI	CTRYAG	2 cut(s)	532, 547
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	402, 405
BstX2I	RGATCY	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	881
BtsCI	GGATG	1 cut(s)	1039
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	658, 770, 966
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	980
Cfr13I	GGNCC	1 cut(s)	879
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	86, 295, 768
CspAI	ACCGGT	1 cut(s)	980
CspCI	CAANNNNNGTGG	4 cut(s)	634, 669, 720, 755
CviAII	CATG	2 cut(s)	301, 369
CviQI	GTAC	3 cut(s)	86, 295, 768
DdeI	CTNAG	3 cut(s)	337, 502, 598
DpnI	GATC	8 cut(s)	232, 261, 363, 426, 544, 578, 676, 889
DpnII	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
DrdI	GACNNNNNNGTC	1 cut(s)	909
DseDI	GACNNNNNNGTC	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	94, 147
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	787
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	2 cut(s)	304, 372
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	756, 832
FatI	CATG	2 cut(s)	300, 368
Fnu4HI	GCNGC	4 cut(s)	106, 391, 394, 987
FokI	GGATG	1 cut(s)	1046
Fsp4HI	GCNGC	4 cut(s)	106, 391, 394, 987
FspBI	CTAG	4 cut(s)	83, 357, 594, 909
GluI	GCNGC	4 cut(s)	106, 391, 394, 987
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	881
HapII	CCGG	1 cut(s)	981
HgaI	GACGC	1 cut(s)	753
Hin1II	CATG	2 cut(s)	304, 372
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	4 cut(s)	266, 373, 812, 1106
HpaII	CCGG	1 cut(s)	981
HphI	GGTGA	2 cut(s)	119, 970
Hpy166II	GTNNAC	2 cut(s)	656, 770
Hpy188I	TCNGA	5 cut(s)	166, 230, 283, 429, 505
Hpy188III	TCNNGA	5 cut(s)	263, 301, 339, 1081, 1099
Hpy8I	GTNNAC	2 cut(s)	656, 770
HpyAV	CCTTC	4 cut(s)	171, 183, 258, 786
HpyCH4III	ACNGT	4 cut(s)	215, 610, 653, 767
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	9 cut(s)	38, 73, 199, 207, 347, 390, 757, 971, 1134
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 353, 387, 921, 953
HpyF3I	CTNAG	3 cut(s)	337, 502, 598
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	304, 372
Kzo9I	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
LmnI	GCTCC	2 cut(s)	790, 961
Lsp1109I	GCAGC	2 cut(s)	402, 405
LweI	GCATC	2 cut(s)	216, 765
MaeI	CTAG	4 cut(s)	83, 357, 594, 909
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	6 cut(s)	58, 184, 243, 398, 515, 834
MalI	GATC	8 cut(s)	232, 261, 363, 426, 544, 578, 676, 889
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
MboII	GAAGA	4 cut(s)	217, 442, 518, 680
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	1115
MnlI	CCTC	5 cut(s)	308, 333, 475, 505, 1106
MroXI	GAANNNNTTC	1 cut(s)	1013
MseI	TTAA	7 cut(s)	254, 663, 920, 993, 1044, 1119, 1144
MslI	CAYNNNNRTG	2 cut(s)	38, 1022
MspA1I	CMGCKG	1 cut(s)	396
MspCI	CTTAAG	1 cut(s)	919
MspI	CCGG	1 cut(s)	981
MspR9I	CCNGG	1 cut(s)	789
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	5 cut(s)	111, 353, 387, 921, 953
NdeII	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
NlaIII	CATG	2 cut(s)	304, 372
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	184, 515
NspV	TTCGAA	1 cut(s)	1007
PagI	TCATGA	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	1013
PfeI	GAWTC	3 cut(s)	266, 373, 812
PfoI	TCCNGGA	1 cut(s)	787
PinAI	ACCGGT	1 cut(s)	980
PkrI	GCNGC	4 cut(s)	107, 392, 395, 988
PleI	GAGTC	1 cut(s)	1114
PpsI	GAGTC	1 cut(s)	1114
PshBI	ATTAAT	1 cut(s)	1044
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	3 cut(s)	87, 296, 769
RsaNI	GTAC	3 cut(s)	86, 295, 768
RseI	CAYNNNNRTG	2 cut(s)	38, 1022
SaqAI	TTAA	7 cut(s)	254, 663, 920, 993, 1044, 1119, 1144
SatI	GCNGC	4 cut(s)	106, 391, 394, 987
Sau3AI	GATC	8 cut(s)	230, 259, 361, 424, 542, 576, 674, 887
Sau96I	GGNCC	1 cut(s)	879
SchI	GAGTC	1 cut(s)	1115
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	216, 765
SfcI	CTRYAG	2 cut(s)	532, 547
SfuI	TTCGAA	1 cut(s)	1007
SgrAI	CRCCGGYG	1 cut(s)	980
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1022
SmlI	CTYRAG	3 cut(s)	466, 919, 1097
SmoI	CTYRAG	3 cut(s)	466, 919, 1097
SsiI	CCGC	4 cut(s)	105, 130, 416, 986
SspMI	CTAG	4 cut(s)	83, 357, 594, 909
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	4 cut(s)	215, 610, 653, 767
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	1007
TatI	WGTACW	2 cut(s)	85, 767
TauI	GCSGC	2 cut(s)	108, 989
TfiI	GAWTC	3 cut(s)	266, 373, 812
Tru1I	TTAA	7 cut(s)	254, 663, 920, 993, 1044, 1119, 1144
Tru9I	TTAA	7 cut(s)	254, 663, 920, 993, 1044, 1119, 1144
TscAI	CASTG	3 cut(s)	658, 777, 973
TseFI	GTSAC	2 cut(s)	184, 515
TseI	GCWGC	2 cut(s)	390, 393
Tsp45I	GTSAC	2 cut(s)	184, 515
TspDTI	ATGAA	4 cut(s)	240, 317, 681, 1006
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	3 cut(s)	658, 777, 973
Vha464I	CTTAAG	1 cut(s)	919
VspI	ATTAAT	1 cut(s)	1044
XapI	RAATTY	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	1013
XspI	CTAG	4 cut(s)	83, 357, 594, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.