Rw1G013670

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001618
Physical Location & Seq
Forward (+)
30537820 .. 30538533
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013670.1

Sequence Viewer

Length: 714 bp
ATGGCATTAGCATTATCTGTTACCTATTTGTTGCATTTCTCTCTAGTACAAGCTGACCATAAGGGCGGCTTCAGCGTGAAGCTCATTCACCGCAACTCTCCGTTGTCTCCTTTCTACAATCCTTCAGAAACACCTTCGCAACGCGTGACAAATGCTTTGCAACGTTCCATCAACCGTGTCAATCTCTTCGGATCAACTAATTTGTTACCTTCATTAAACGATCCTGAATCTACAATAGTATCAGACAAGGGCGAGTACCTCATGAAAATATCAATTGGCACTCCTGCCGTAGAAATCTCAGGAGTTGCAGATACAGCTAGTGATCTTACATGGATTCAATGCGTGCCTTGCAGCAACTGTTACAAGCAAAAATCTCCGCTCTATGATCCGAAGAATTCCAATACTTACAAAGTGGTTTCTTGCCCCTCAAGTCAATGTCAATCTGTAAGTGGAACCTCTTGCTCAGAAGATACCTGTCACTACAAAAGGTTCTATAGGGATAGATCCTACAGCAATGGAATTGTCTCAACAGAGACGATCACTTTCAACTCCACTAGCTTACGTCAAACAGTTTCACTCCCACAGATTATAATTGGTTGTGGGCACAATAACAGTGGACTTTTTAATGAAGATGGATCAGGCGTGATTGGACTTGGACGTGGATCAATGTCCCTTATCTCCCAAATAGATTCTTCAATTGATGGGACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

237

Amino Acids

25.7

Weight (kDa)

6.93

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 86 - 235 1.7e-44 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccBSI CCGCTC 1 cut(s) 379
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 66, 91, 377
AclI AACGTT 1 cut(s) 163
AclWI GGATC 6 cut(s) 199, 215, 380, 498, 643, 670
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 2 cut(s) 55, 108
AfaI GTAC 2 cut(s) 48, 257
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 338, 547, 696
AjiI CACGTC 1 cut(s) 659
AluBI AGCT 4 cut(s) 53, 82, 317, 558
AluI AGCT 4 cut(s) 53, 82, 317, 558
Alw26I GTCTC 3 cut(s) 111, 527, 529
AlwI GGATC 6 cut(s) 199, 215, 380, 498, 643, 670
AlwNI CAGNNNCTG 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BbvI GCAGC 1 cut(s) 363
BccI CCATC 3 cut(s) 176, 626, 695
BceAI ACGGC 1 cut(s) 272
BcoDI GTCTC 3 cut(s) 111, 527, 529
BfaI CTAG 3 cut(s) 44, 318, 555
BfmI CTRYAG 2 cut(s) 493, 508
BisI GCNGC 2 cut(s) 67, 352
BlsI GCNGC 2 cut(s) 68, 353
BmgBI CACGTC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 312, 477
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 655
BsmAI GTCTC 3 cut(s) 111, 527, 529
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
BspACI CCGC 3 cut(s) 66, 91, 377
BspCNI CTCAG 2 cut(s) 311, 476
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 6 cut(s) 199, 215, 380, 498, 643, 670
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 520
BssMI GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
Bst4CI ACNGT 4 cut(s) 176, 359, 571, 614
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 298, 463
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 8 cut(s) 194, 223, 325, 388, 506, 540, 638, 665
BstMAI GTCTC 3 cut(s) 111, 527, 529
BstMBI GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
BstMWI GCNNNNNNNGC 3 cut(s) 72, 314, 348
BstSFI CTRYAG 2 cut(s) 493, 508
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BtrI CACGTC 1 cut(s) 659
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 357
CciI TCATGA 1 cut(s) 261
Csp6I GTAC 2 cut(s) 47, 256
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 2 cut(s) 262, 330
CviJI RGCY 5 cut(s) 53, 69, 82, 317, 558
CviKI_1 RGCY 5 cut(s) 53, 69, 82, 317, 558
CviQI GTAC 2 cut(s) 47, 256
DdeI CTNAG 2 cut(s) 298, 463
DpnI GATC 8 cut(s) 193, 222, 324, 387, 505, 539, 637, 664
DpnII GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 55, 108
EcoRI GAATTC 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 2 cut(s) 265, 333
FaiI YATR 6 cut(s) 60, 263, 331, 384, 495, 590
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 655
FatI CATG 2 cut(s) 261, 329
Fnu4HI GCNGC 2 cut(s) 67, 352
Fsp4HI GCNGC 2 cut(s) 67, 352
FspBI CTAG 3 cut(s) 44, 318, 555
GluI GCNGC 2 cut(s) 67, 352
Hin1II CATG 2 cut(s) 265, 333
HinfI GANTC 3 cut(s) 227, 334, 689
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 5 cut(s) 127, 191, 244, 390, 466
Hpy188III TCNNGA 3 cut(s) 224, 262, 300
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 3 cut(s) 132, 144, 219
HpyCH4III ACNGT 4 cut(s) 176, 359, 571, 614
HpyCH4IV ACGT 3 cut(s) 163, 562, 658
HpyCH4V TGCA 4 cut(s) 34, 160, 308, 351
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 314, 348
HpyF3I CTNAG 2 cut(s) 298, 463
HpySE526I ACGT 3 cut(s) 163, 562, 658
Hsp92II CATG 2 cut(s) 265, 333
Kzo9I GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
LpnPI CCDG 5 cut(s) 237, 285, 297, 487, 624
Lsp1109I GCAGC 1 cut(s) 363
MaeI CTAG 3 cut(s) 44, 318, 555
MaeII ACGT 3 cut(s) 163, 562, 658
MaeIII GTNAC 5 cut(s) 19, 145, 204, 359, 476
MalI GATC 8 cut(s) 193, 222, 324, 387, 505, 539, 637, 664
MbiI CCGCTC 1 cut(s) 379
MboI GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
MboII GAAGA 5 cut(s) 178, 403, 479, 641, 684
MfeI CAATTG 2 cut(s) 273, 696
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 6 cut(s) 199, 273, 394, 519, 591, 696
MluI ACGCGT 1 cut(s) 142
MnlI CCTC 3 cut(s) 269, 436, 466
MseI TTAA 3 cut(s) 215, 624, 712
MunI CAATTG 2 cut(s) 273, 696
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 72, 314, 348
NdeII GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
NlaIII CATG 2 cut(s) 265, 333
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 145, 476
PagI TCATGA 1 cut(s) 261
PfeI GAWTC 3 cut(s) 227, 334, 689
PkrI GCNGC 2 cut(s) 68, 353
PsiI TTATAA 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 2 cut(s) 48, 257
RsaNI GTAC 2 cut(s) 47, 256
SaqAI TTAA 3 cut(s) 215, 624, 712
SatI GCNGC 2 cut(s) 67, 352
Sau3AI GATC 8 cut(s) 191, 220, 322, 385, 503, 537, 635, 662
SduI GDGCHC 1 cut(s) 606
SfcI CTRYAG 2 cut(s) 493, 508
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 6 cut(s) 199, 273, 394, 519, 591, 696
SsiI CCGC 3 cut(s) 66, 91, 377
SspMI CTAG 3 cut(s) 44, 318, 555
TaaI ACNGT 4 cut(s) 176, 359, 571, 614
TaiI ACGT 3 cut(s) 166, 565, 661
TasI AATT 6 cut(s) 199, 273, 394, 519, 591, 696
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 227, 334, 689
Tru1I TTAA 3 cut(s) 215, 624, 712
Tru9I TTAA 3 cut(s) 215, 624, 712
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 2 cut(s) 145, 476
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 2 cut(s) 145, 476
TspDTI ATGAA 3 cut(s) 201, 278, 642
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 619
XapI RAATTY 1 cut(s) 394
XspI CTAG 3 cut(s) 44, 318, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.