AT5G35920

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001167
Physical Location & Seq
Forward (+)
14056437 .. 14056904
468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35920.1

Sequence Viewer

Length: 468 bp
ATGAAAAAATTAAAAATCTTGAAAGAGGCATTCCGGTTACATCATGTGGCGCCATTCAACCTCCCTCACATGTCCACTACTGATGTTGTGGTGGATGGTTACTTCATCCCCAAGGGAAGCCACAAGCTTATTAGTCGTATGGGGATCGGGAGAAACCCTAAAGTGTGGGACAAACCGCTTAAGTTTGATCCTGAGAGACATTTAAGCAATAACACATGTGTAGAACTAAAAGAGCCTGATCTCAATATAATAACGTTCGGTGCAGAAAGACGAGGGTGTATGGGTGCGGACATTGGGTCAGCCATGACGTACATGTTGGTGGCTCGGTTGATTCAAGGGTTCACGTGGTCACCAGTACCCAGTGAAAGTAAAATTGATATTTCAGTAAGCAAGAGTGATCTTTTTATGGCAAAACCCTTAAATGCGGTTGTAACACCTCGTTTGGATCCAAATGTGTATCCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006520 GO:0006568 GO:0006569 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009403 GO:0009404 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009625 GO:0009628 GO:0009682 GO:0009683 GO:0009684 GO:0009700 GO:0009850 GO:0009851 GO:0009987 GO:0010035 GO:0010112 GO:0010120 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0016054 GO:0016137 GO:0016138 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019439 GO:0019748 GO:0019752 GO:0019756 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031347 GO:0032101 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0034754 GO:0042221 GO:0042341 GO:0042402 GO:0042430 GO:0042435 GO:0042436 GO:0042445 GO:0042446 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043900 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045229 GO:0046217 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0050898 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055114 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072330 GO:0080028 GO:0080134 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00380 ko00460 ko00966 ko01110 ko01210 map00380 map00460 map00966 map01110 map01210
Pfam Domains
Protein Families
p450

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

9.45

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 141 3.4e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 3 cut(s) 176, 287, 425
AclI AACGTT 1 cut(s) 254
AclWI GGATC 4 cut(s) 152, 182, 440, 453
AcvI CACGTG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 311, 357
AflII CTTAAG 1 cut(s) 179
AflIII ACRYGT 3 cut(s) 69, 215, 312
AgsI TTSAA 3 cut(s) 22, 58, 335
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 4 cut(s) 152, 182, 440, 453
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 342
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 345
BccI CCATC 1 cut(s) 89
BciVI GTATCC 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 190
BfoI RGCGCY 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 468
BmeRI GACNNNNNGTC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 51, 447
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 353, 360
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 100, 105
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 353, 360
BsgI GTGCAG 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 29
Bsp143I GATC 5 cut(s) 144, 187, 238, 397, 445
BspACI CCGC 3 cut(s) 176, 287, 425
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 51, 447
BspPI GGATC 4 cut(s) 152, 182, 440, 453
BspT107I GGYRCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 179
BsrI ACTGG 2 cut(s) 353, 360
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 5 cut(s) 144, 187, 238, 397, 445
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 192
BstEII GGTNACC 1 cut(s) 348
BstF5I GGATG 2 cut(s) 100, 105
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 5 cut(s) 147, 190, 241, 400, 448
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 5 cut(s) 144, 187, 238, 397, 445
BstNSI RCATGY 3 cut(s) 73, 219, 316
BstPI GGTNACC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuI GTATCC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 100, 105
BtsIMutI CAGTG 1 cut(s) 367
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 310, 356
CviAII CATG 5 cut(s) 44, 70, 216, 304, 313
CviJI RGCY 6 cut(s) 120, 127, 235, 302, 323, 464
CviKI_1 RGCY 6 cut(s) 120, 127, 235, 302, 323, 464
CviQI GTAC 2 cut(s) 310, 356
DdeI CTNAG 1 cut(s) 192
DinI GGCGCC 1 cut(s) 51
DpnI GATC 5 cut(s) 146, 189, 240, 399, 447
DpnII GATC 5 cut(s) 144, 187, 238, 397, 445
DriI GACNNNNNGTC 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 5 cut(s) 47, 73, 219, 307, 316
FaiI YATR 9 cut(s) 45, 71, 140, 217, 248, 281, 305, 314, 407
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 43, 69, 215, 303, 312
FokI GGATG 2 cut(s) 92, 107
GlaI GCGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 53
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 5 cut(s) 47, 73, 219, 307, 316
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 331
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 75, 342
Hpy188III TCNNGA 3 cut(s) 19, 148, 191
Hpy8I GTNNAC 2 cut(s) 75, 342
HpyCH4IV ACGT 3 cut(s) 254, 308, 344
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 3 cut(s) 254, 308, 344
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 5 cut(s) 47, 73, 219, 307, 316
HspAI GCGC 1 cut(s) 50
KasI GGCGCC 1 cut(s) 49
Kzo9I GATC 5 cut(s) 144, 187, 238, 397, 445
LpnPI CCDG 5 cut(s) 47, 204, 249, 366, 373
MaeII ACGT 3 cut(s) 254, 308, 344
MaeIII GTNAC 4 cut(s) 36, 98, 348, 430
MalI GATC 5 cut(s) 146, 189, 240, 399, 447
MboI GATC 5 cut(s) 144, 187, 238, 397, 445
MflI RGATCY 1 cut(s) 445
MluCI AATT 2 cut(s) 8, 372
Mly113I GGCGCC 1 cut(s) 50
MnlI CCTC 5 cut(s) 19, 71, 75, 266, 447
MseI TTAA 4 cut(s) 11, 180, 203, 419
MslI CAYNNNNRTG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 29
NarI GGCGCC 1 cut(s) 50
NdeII GATC 5 cut(s) 144, 187, 238, 397, 445
NlaIII CATG 5 cut(s) 47, 73, 219, 307, 316
NlaIV GGNNCC 2 cut(s) 51, 447
NmuCI GTSAC 1 cut(s) 348
NspI RCATGY 3 cut(s) 73, 219, 316
PciI ACATGT 3 cut(s) 69, 215, 312
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 53
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 345
PscI ACATGT 3 cut(s) 69, 215, 312
Psp1406I AACGTT 1 cut(s) 254
PspCI CACGTG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 51, 447
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 311, 357
RsaNI GTAC 2 cut(s) 310, 356
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 4 cut(s) 11, 180, 203, 419
Sau3AI GATC 5 cut(s) 144, 187, 238, 397, 445
SetI ASST 6 cut(s) 63, 129, 257, 311, 347, 439
SfoI GGCGCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 8, 372
SsiI CCGC 3 cut(s) 176, 287, 425
SspDI GGCGCC 1 cut(s) 49
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 3 cut(s) 257, 311, 347
TasI AATT 2 cut(s) 8, 372
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 4 cut(s) 11, 180, 203, 419
Tru9I TTAA 4 cut(s) 11, 180, 203, 419
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 348
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 17, 94
TspRI CASTG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 179
XceI RCATGY 3 cut(s) 73, 219, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.