Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

7326936 .. 7327974

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0047400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGCTATTGGGACAACCACTCGATCACAAACACATTCCAAACAGAAAACTCAAACATCTCCGATTTCCAAATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAGTTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTATCAAAGGCCGCCCAAGAAACTACCTCATTTGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCGAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGCACATTTGACAGTGCTGAAGCCGCCGCTTTGGCCTATGATCAAGCGGCCTTTGCCATGCGGGGCTCCGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGAGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCGATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTACTACTACTACTGCTGCTGCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

261

Amino Acids

29.28

Weight (kDa)

4.98

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	117 - 168	6.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	216, 370, 390, 459, 462, 482, 496, 504, 507
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	100, 383
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	2 cut(s)	280, 340
AgsI	TTSAA	2 cut(s)	166, 239
AhlI	ACTAGT	1 cut(s)	749
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	396, 549
AoxI	GGCC	4 cut(s)	213, 371, 468, 483
ApeKI	GCWGC	3 cut(s)	260, 770, 773
ApoI	RAATTY	2 cut(s)	100, 383
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	503
BbvI	GCAGC	3 cut(s)	247, 757, 760
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	358, 494
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	396, 549
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	3 cut(s)	137, 434, 750
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	121, 192
Bpu14I	TTCGAA	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	180, 374
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 340
Bse118I	RCCGGY	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	180, 374
BseGI	GGATG	5 cut(s)	110, 136, 207, 266, 308
BseLI	CCNNNNNNNGG	2 cut(s)	280, 340
BseMII	CTCAG	2 cut(s)	108, 270
BseX3I	CGGCCG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	247, 757, 760
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	215, 373, 470, 485
BsiEI	CGRYCG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	524, 538, 596
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	280, 340
BsmAI	GTCTC	2 cut(s)	396, 549
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	215, 373, 470, 485
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	24, 475
BspACI	CCGC	9 cut(s)	216, 370, 390, 459, 462, 482, 496, 504, 507
BspANI	GGCC	4 cut(s)	215, 373, 470, 485
BspCNI	CTCAG	2 cut(s)	109, 269
BspLI	GGNNCC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	180, 374
BssMI	GATC	2 cut(s)	24, 475
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	449, 563
Bst6I	CTCTTC	3 cut(s)	162, 552, 644
BstACI	GRCGYC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	696
BstDEI	CTNAG	2 cut(s)	117, 256
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	5 cut(s)	110, 136, 207, 266, 308
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	2 cut(s)	27, 478
BstMAI	GTCTC	2 cut(s)	396, 549
BstMBI	GATC	2 cut(s)	24, 475
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	247, 757, 760
BstZI	CGGCCG	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	215, 373, 470, 485
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	5 cut(s)	110, 136, 207, 266, 308
BtsIMutI	CAGTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	595
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	753
CviAII	CATG	2 cut(s)	416, 493
CviJI	RGCY	9 cut(s)	6, 215, 260, 373, 433, 458, 470, 485, 501
CviKI_1	RGCY	9 cut(s)	6, 215, 260, 373, 433, 458, 470, 485, 501
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	2 cut(s)	117, 256
DpnI	GATC	2 cut(s)	26, 477
DpnII	GATC	2 cut(s)	24, 475
EaeI	YGGCCR	1 cut(s)	371
EagI	CGGCCG	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	162, 552, 644
EarI	CTCTTC	3 cut(s)	162, 552, 644
EciI	GGCGGA	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	503
Eco52I	CGGCCG	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	2 cut(s)	419, 496
FaiI	YATR	5 cut(s)	278, 417, 474, 494, 557
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	415, 492
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	475
FokI	GGATG	5 cut(s)	97, 143, 214, 253, 295
FriOI	GRGCYC	1 cut(s)	503
FspBI	CTAG	3 cut(s)	137, 434, 750
GlaI	GCGC	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	4 cut(s)	215, 373, 470, 485
HapII	CCGG	3 cut(s)	524, 538, 596
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	419, 496
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	5 cut(s)	176, 302, 404, 534, 542
HpaII	CCGG	3 cut(s)	524, 538, 596
Hpy188I	TCNGA	9 cut(s)	64, 106, 118, 181, 301, 313, 365, 574, 742
Hpy188III	TCNNGA	2 cut(s)	137, 551
HpyAV	CCTTC	3 cut(s)	334, 360, 624
HpyCH4III	ACNGT	2 cut(s)	449, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
HpyF3I	CTNAG	2 cut(s)	117, 256
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	419, 496
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	24, 475
LmnI	GCTCC	2 cut(s)	506, 707
LpnPI	CCDG	4 cut(s)	424, 537, 551, 609
Lsp1109I	GCAGC	3 cut(s)	247, 757, 760
LweI	GCATC	2 cut(s)	121, 192
MaeI	CTAG	3 cut(s)	137, 434, 750
MalI	GATC	2 cut(s)	26, 477
MboI	GATC	2 cut(s)	24, 475
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	5 cut(s)	76, 100, 383, 635, 778
MlyI	GAGTC	4 cut(s)	170, 398, 543, 551
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	124, 175, 241, 274, 350, 666
MroXI	GAANNNNTTC	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	524, 538, 596
MspR9I	CCNGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	2 cut(s)	24, 475
NlaIII	CATG	2 cut(s)	419, 496
NlaIV	GGNNCC	1 cut(s)	502
NmeAIII	GCCGAG	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	537
PleI	GAGTC	4 cut(s)	170, 398, 542, 550
PpsI	GAGTC	4 cut(s)	170, 398, 542, 550
PspN4I	GGNNCC	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
Sau3AI	GATC	2 cut(s)	24, 475
ScaI	AGTACT	1 cut(s)	754
SchI	GAGTC	4 cut(s)	170, 398, 543, 551
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	3 cut(s)	233, 262, 677
SfaNI	GCATC	2 cut(s)	121, 192
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	696
SgrAI	CRCCGGYG	1 cut(s)	595
SpeI	ACTAGT	1 cut(s)	749
Sse9I	AATT	5 cut(s)	76, 100, 383, 635, 778
SsiI	CCGC	9 cut(s)	216, 370, 390, 459, 462, 482, 496, 504, 507
SspMI	CTAG	3 cut(s)	137, 434, 750
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	449, 563
TaqI	TCGA	4 cut(s)	23, 407, 623, 696
TasI	AATT	5 cut(s)	76, 100, 383, 635, 778
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	7 cut(s)	218, 373, 392, 461, 464, 485, 509
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	3 cut(s)	260, 770, 773
TspDTI	ATGAA	4 cut(s)	89, 183, 572, 726
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	100, 383
XbaI	TCTAGA	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	137, 434, 750
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.