Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

16289679 .. 16290663

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG175300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTGGAGGAACAGACCAGCATATAAATGGATACATGACCTTCTGAAACAGCTCAACACTGATATTGCCTGTGTACGATTGGGAAATGTTCATGTGATCGTAGTCAGATCACCTGAAATTGCAAGAGAATTTTTGAAGAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGCTTTGGTTGCCAACGTGTTTAATCAGTCCAGACTCCGGTGGCTACTCAATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTTTACAGTCAGTGCTCAACCAGTGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCAAATGTGATGAGAAGGATGATCTTCAACATGAGGTATTTTGGCAAAGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATTCGTATGCATTCTGTGTATCCGATTACCTTCCATGGCTAAGACCATTTGACATAGGTGGGCATGAGAAGAAAGTGAGGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAGTACGGAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTTGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCGTTTATTGTCAGTTGAAGAAATCAAAGCACAAATCACTGTAAGATATTCTTATATAGATCCACAACTGTTAAGCTCAACTACCTTGAAAGTGATAATTAACTGCATTTGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

293

Amino Acids

33.91

Weight (kDa)

9.4

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	17 - 268	4e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
AclWI	GGATC	2 cut(s)	707, 818
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	4 cut(s)	75, 203, 222, 666
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	6 cut(s)	136, 442, 491, 622, 782, 853
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	3 cut(s)	52, 257, 840
AluI	AGCT	3 cut(s)	52, 257, 840
Alw21I	GWGCWC	2 cut(s)	359, 683
AlwI	GGATC	2 cut(s)	707, 818
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	398, 763
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	479, 643, 721
AsuHPI	GGTGA	2 cut(s)	102, 394
AvaII	GGWCC	2 cut(s)	643, 721
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
Bbv12I	GWGCWC	2 cut(s)	359, 683
BbvI	GCAGC	2 cut(s)	410, 775
BccI	CCATC	2 cut(s)	467, 752
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	2 cut(s)	24, 562
BfmI	CTRYAG	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	732
BfuI	GTATCC	2 cut(s)	24, 562
BisI	GCNGC	2 cut(s)	399, 764
BlsI	GCNGC	2 cut(s)	400, 765
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	2 cut(s)	643, 721
BmgT120I	GGNCC	3 cut(s)	479, 643, 721
BmiI	GGNNCC	2 cut(s)	645, 708
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	167, 604
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	438, 478, 619
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	2 cut(s)	410, 775
BseYI	CCCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	774
BshFI	GGCC	1 cut(s)	481
BsiHKAI	GWGCWC	2 cut(s)	359, 683
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmI	GAATGC	2 cut(s)	532, 542
BsnI	GGCC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	359, 683
Bsp143I	GATC	5 cut(s)	96, 107, 435, 699, 823
Bsp19I	CCATGG	1 cut(s)	566
BspANI	GGCC	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	645, 708
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	707, 818
BspQI	GCTCTTC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	5 cut(s)	96, 107, 435, 699, 823
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	350, 805, 834
Bst6I	CTCTTC	2 cut(s)	247, 460
BstAFI	CTTAAG	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	438, 478, 619
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	5 cut(s)	99, 110, 438, 702, 826
BstMBI	GATC	5 cut(s)	96, 107, 435, 699, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 263
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	711
BstV1I	GCAGC	2 cut(s)	410, 775
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	823
BsuI	GTATCC	2 cut(s)	24, 562
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	3 cut(s)	438, 478, 619
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	5 cut(s)	57, 242, 359, 370, 801
BveI	ACCTGC	1 cut(s)	732
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	479, 643, 721
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	74, 202, 221, 665
CviAII	CATG	6 cut(s)	35, 92, 445, 567, 596, 877
CviQI	GTAC	4 cut(s)	74, 202, 221, 665
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	5 cut(s)	98, 109, 437, 701, 825
DpnII	GATC	5 cut(s)	96, 107, 435, 699, 823
Eam1104I	CTCTTC	2 cut(s)	247, 460
EarI	CTCTTC	2 cut(s)	247, 460
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	2 cut(s)	643, 721
EcoO109I	RGGNCCY	2 cut(s)	643, 721
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	6 cut(s)	38, 95, 448, 570, 599, 880
FalI	AAGNNNNNCTT	2 cut(s)	799, 831
FatI	CATG	6 cut(s)	34, 91, 444, 566, 595, 876
Fnu4HI	GCNGC	2 cut(s)	399, 764
FokI	GGATG	3 cut(s)	445, 485, 626
Fsp4HI	GCNGC	2 cut(s)	399, 764
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	399, 764
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	6 cut(s)	38, 95, 448, 570, 599, 880
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	2 cut(s)	102, 394
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	45, 107, 556
Hpy188III	TCNNGA	4 cut(s)	162, 285, 641, 689
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	50, 423, 572
HpyCH4III	ACNGT	3 cut(s)	350, 805, 834
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	7 cut(s)	122, 398, 532, 542, 755, 870, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 263
HpyF3I	CTNAG	1 cut(s)	572
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	38, 95, 448, 570, 599, 880
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	5 cut(s)	96, 107, 435, 699, 823
LguI	GCTCTTC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	2 cut(s)	410, 775
LweI	GCATC	2 cut(s)	167, 604
MaeII	ACGT	1 cut(s)	270
MalI	GATC	5 cut(s)	98, 109, 437, 701, 825
MboI	GATC	5 cut(s)	96, 107, 435, 699, 823
MboII	GAAGA	9 cut(s)	148, 253, 264, 430, 477, 503, 506, 613, 794
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	359, 683
MluCI	AATT	4 cut(s)	117, 128, 624, 861
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	441, 463, 470, 603, 669, 709, 712
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	4 cut(s)	191, 276, 836, 864
MslI	CAYNNNNRTG	4 cut(s)	25, 173, 537, 875
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	2 cut(s)	532, 542
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	155, 263
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	5 cut(s)	96, 107, 435, 699, 823
NlaIII	CATG	6 cut(s)	38, 95, 448, 570, 599, 880
NlaIV	GGNNCC	2 cut(s)	645, 708
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	247
PctI	GAATGC	2 cut(s)	532, 542
PkrI	GCNGC	2 cut(s)	400, 765
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	2 cut(s)	643, 721
Psp5II	RGGWCCY	2 cut(s)	643, 721
Psp6I	CCWGG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	645, 708
PspPI	GGNCC	3 cut(s)	479, 643, 721
PspPPI	RGGWCCY	2 cut(s)	643, 721
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	4 cut(s)	75, 203, 222, 666
RsaNI	GTAC	4 cut(s)	74, 202, 221, 665
RseI	CAYNNNNRTG	4 cut(s)	25, 173, 537, 875
SapI	GCTCTTC	1 cut(s)	247
SaqAI	TTAA	4 cut(s)	191, 276, 836, 864
SatI	GCNGC	2 cut(s)	399, 764
Sau3AI	GATC	5 cut(s)	96, 107, 435, 699, 823
Sau96I	GGNCC	3 cut(s)	479, 643, 721
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	2 cut(s)	359, 683
SfaNI	GCATC	2 cut(s)	167, 604
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	2 cut(s)	643, 721
SmiMI	CAYNNNNRTG	4 cut(s)	25, 173, 537, 875
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	4 cut(s)	117, 128, 624, 861
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	3 cut(s)	350, 805, 834
TaiI	ACGT	1 cut(s)	273
TasI	AATT	4 cut(s)	117, 128, 624, 861
Tru1I	TTAA	4 cut(s)	191, 276, 836, 864
Tru9I	TTAA	4 cut(s)	191, 276, 836, 864
TscAI	CASTG	5 cut(s)	64, 242, 359, 370, 808
TseI	GCWGC	2 cut(s)	398, 763
TspDTI	ATGAA	3 cut(s)	80, 333, 727
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	5 cut(s)	64, 242, 359, 370, 808
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	643, 721
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.