Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

18067782 .. 18068916

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATTCCTGTTATTGCAGTACTACTTTTCCTTGCCTCATCCCTCTTCTTTAGTTTTCTTATCCAAAAAAAGAAGAGAGTAGTACTCCCAGCAATGCCCCCTCTCCCTCCAGGACCAAGCCCATGGCCGATCATTGGGTGTCTGCCAGAGATGTGGAGGAACAGACCAGCATATAAATGGATACATGACCTTCTGAAACAGCTCAACACTGATATTGCCTGTGTACGATTGGGAAATGTTCATGTGATCGTAGTCAGATCACCTGAAATTGCAAGAGAATTTTTGAAGAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGCTTTGGTTGCCAACGTGTTTAATCAGTCCAGACTCCGGTGGCTACTCAATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTTTACAGTCAGTGCTCAACCAGTGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCAAATGTGATGAGAAGGATGATCTTCAACATGAGGTATTTTGGCAAAGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATTCGTATGCATTCTGTGTATCCGATTACCTTCCATGGCTAAGACCATTTGACATAGGTGGGCATGAGAAGAAAGTGAGGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAGTACGGAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTTGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCGTTTATTGTCAGTTGAAGAAATCAAAGCACAAATCACTGTAAGATATTCTTATATAGATCCACAACTGTTAAGCTCAACTACCTTGAAAGTGATAATTAACTGCATTTGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

343

Amino Acids

39.36

Weight (kDa)

9.51

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	36 - 318	1.1e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	882
AclWI	GGATC	2 cut(s)	857, 968
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	6 cut(s)	21, 84, 225, 353, 372, 816
AfiI	CCNNNNNNNGG	2 cut(s)	134, 441
AflII	CTTAAG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	6 cut(s)	286, 592, 641, 772, 932, 1003
AjnI	CCWGG	2 cut(s)	109, 631
AluBI	AGCT	3 cut(s)	202, 407, 990
AluI	AGCT	3 cut(s)	202, 407, 990
Alw21I	GWGCWC	2 cut(s)	509, 833
AlwI	GGATC	2 cut(s)	857, 968
AoxI	GGCC	2 cut(s)	125, 629
ApeKI	GCWGC	2 cut(s)	548, 913
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	4 cut(s)	113, 629, 793, 871
AsuHPI	GGTGA	2 cut(s)	252, 544
AvaII	GGWCC	3 cut(s)	113, 793, 871
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
Bbv12I	GWGCWC	2 cut(s)	509, 833
BbvI	GCAGC	2 cut(s)	560, 925
BccI	CCATC	2 cut(s)	617, 902
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	111, 633
BciVI	GTATCC	2 cut(s)	174, 712
BfmI	CTRYAG	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	882
BfuI	GTATCC	2 cut(s)	174, 712
BisI	GCNGC	2 cut(s)	549, 914
BlsI	GCNGC	2 cut(s)	550, 915
BmcAI	AGTACT	2 cut(s)	21, 84
Bme1390I	CCNGG	2 cut(s)	111, 633
Bme18I	GGWCC	3 cut(s)	113, 793, 871
BmgT120I	GGNCC	4 cut(s)	113, 629, 793, 871
BmiI	GGNNCC	2 cut(s)	795, 858
BmrFI	CCNGG	2 cut(s)	111, 633
BmsI	GCATC	2 cut(s)	317, 754
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	122, 716
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 441
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	111, 633
BseDI	CCNNGG	2 cut(s)	122, 716
BseGI	GGATG	4 cut(s)	38, 588, 628, 769
BseLI	CCNNNNNNNGG	2 cut(s)	134, 441
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	2 cut(s)	560, 925
BseYI	CCCAGC	2 cut(s)	88, 562
BsgI	GTGCAG	1 cut(s)	924
BshFI	GGCC	2 cut(s)	127, 631
BsiHKAI	GWGCWC	2 cut(s)	509, 833
BsiSI	CCGG	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	134, 441
BsmI	GAATGC	2 cut(s)	682, 692
BsnI	GGCC	2 cut(s)	127, 631
Bsp1286I	GDGCHC	2 cut(s)	509, 833
Bsp143I	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
Bsp19I	CCATGG	2 cut(s)	122, 716
BspANI	GGCC	2 cut(s)	127, 631
BspLI	GGNNCC	2 cut(s)	795, 858
BspMI	ACCTGC	1 cut(s)	882
BspPI	GGATC	2 cut(s)	857, 968
BspQI	GCTCTTC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	122, 716
BssMI	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
BssT1I	CCWWGG	2 cut(s)	122, 716
Bst2UI	CCWGG	2 cut(s)	111, 633
Bst4CI	ACNGT	3 cut(s)	500, 955, 984
Bst6I	CTCTTC	4 cut(s)	50, 68, 397, 610
BstAFI	CTTAAG	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	722
BstDSI	CCRYGG	2 cut(s)	122, 716
BstF5I	GGATG	4 cut(s)	38, 588, 628, 769
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	6 cut(s)	132, 249, 260, 588, 852, 976
BstMBI	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 413
BstNI	CCWGG	2 cut(s)	111, 633
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	2 cut(s)	109, 631
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	2 cut(s)	560, 925
BstX2I	RGATCY	1 cut(s)	973
BstXI	CCANNNNNNTGG	3 cut(s)	123, 153, 325
BstYI	RGATCY	1 cut(s)	973
BsuI	GTATCC	2 cut(s)	174, 712
BsuRI	GGCC	2 cut(s)	127, 631
BtgI	CCRYGG	2 cut(s)	122, 716
BtsCI	GGATG	4 cut(s)	38, 588, 628, 769
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	5 cut(s)	207, 392, 509, 520, 951
BveI	ACCTGC	1 cut(s)	882
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	4 cut(s)	113, 629, 793, 871
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	6 cut(s)	20, 83, 224, 352, 371, 815
CviAII	CATG	7 cut(s)	123, 185, 242, 595, 717, 746, 1027
CviQI	GTAC	6 cut(s)	20, 83, 224, 352, 371, 815
DdeI	CTNAG	1 cut(s)	722
DpnI	GATC	6 cut(s)	131, 248, 259, 587, 851, 975
DpnII	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	4 cut(s)	50, 68, 397, 610
EarI	CTCTTC	4 cut(s)	50, 68, 397, 610
Eco130I	CCWWGG	2 cut(s)	122, 716
Eco47I	GGWCC	3 cut(s)	113, 793, 871
EcoO109I	RGGNCCY	2 cut(s)	793, 871
EcoRII	CCWGG	2 cut(s)	109, 631
EcoT14I	CCWWGG	2 cut(s)	122, 716
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	122, 716
FaeI	CATG	7 cut(s)	126, 188, 245, 598, 720, 749, 1030
FalI	AAGNNNNNCTT	2 cut(s)	949, 981
FatI	CATG	7 cut(s)	122, 184, 241, 594, 716, 745, 1026
Fnu4HI	GCNGC	2 cut(s)	549, 914
FokI	GGATG	4 cut(s)	25, 595, 635, 776
Fsp4HI	GCNGC	2 cut(s)	549, 914
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	2 cut(s)	549, 914
GsaI	CCCAGC	2 cut(s)	92, 566
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	127, 631
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	7 cut(s)	126, 188, 245, 598, 720, 749, 1030
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	2 cut(s)	4, 438
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	252, 544
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	195, 257, 706
Hpy188III	TCNNGA	4 cut(s)	312, 435, 791, 839
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	200, 573, 722
HpyCH4III	ACNGT	3 cut(s)	500, 955, 984
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	8 cut(s)	17, 272, 548, 682, 692, 905, 1020, 1026
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 413
HpyF3I	CTNAG	1 cut(s)	722
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	7 cut(s)	126, 188, 245, 598, 720, 749, 1030
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	2 cut(s)	560, 925
LweI	GCATC	2 cut(s)	317, 754
MaeII	ACGT	1 cut(s)	420
MalI	GATC	6 cut(s)	131, 248, 259, 587, 851, 975
MboI	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	2 cut(s)	509, 833
MluCI	AATT	4 cut(s)	267, 278, 774, 1011
MlyI	GAGTC	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	694
MseI	TTAA	4 cut(s)	341, 426, 986, 1014
MslI	CAYNNNNRTG	4 cut(s)	175, 323, 687, 1025
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	2 cut(s)	111, 633
Mva1269I	GAATGC	2 cut(s)	682, 692
MvaI	CCWGG	2 cut(s)	111, 633
MwoI	GCNNNNNNNGC	2 cut(s)	305, 413
NcoI	CCATGG	2 cut(s)	122, 716
NdeII	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
NlaIII	CATG	7 cut(s)	126, 188, 245, 598, 720, 749, 1030
NlaIV	GGNNCC	2 cut(s)	795, 858
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	1030
PciSI	GCTCTTC	1 cut(s)	397
PctI	GAATGC	2 cut(s)	682, 692
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	550, 915
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	2 cut(s)	793, 871
Psp5II	RGGWCCY	2 cut(s)	793, 871
Psp6I	CCWGG	2 cut(s)	109, 631
PspFI	CCCAGC	2 cut(s)	88, 562
PspGI	CCWGG	2 cut(s)	109, 631
PspN4I	GGNNCC	2 cut(s)	795, 858
PspPI	GGNCC	4 cut(s)	113, 629, 793, 871
PspPPI	RGGWCCY	2 cut(s)	793, 871
PsuI	RGATCY	1 cut(s)	973
RsaI	GTAC	6 cut(s)	21, 84, 225, 353, 372, 816
RsaNI	GTAC	6 cut(s)	20, 83, 224, 352, 371, 815
RseI	CAYNNNNRTG	4 cut(s)	175, 323, 687, 1025
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	341, 426, 986, 1014
SatI	GCNGC	2 cut(s)	549, 914
Sau3AI	GATC	6 cut(s)	129, 246, 257, 585, 849, 973
Sau96I	GGNCC	4 cut(s)	113, 629, 793, 871
ScaI	AGTACT	2 cut(s)	21, 84
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	111, 633
SduI	GDGCHC	2 cut(s)	509, 833
SfaNI	GCATC	2 cut(s)	317, 754
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	3 cut(s)	113, 793, 871
SmiMI	CAYNNNNRTG	4 cut(s)	175, 323, 687, 1025
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	267, 278, 774, 1011
StyD4I	CCNGG	2 cut(s)	109, 631
StyI	CCWWGG	2 cut(s)	122, 716
TaaI	ACNGT	3 cut(s)	500, 955, 984
TaiI	ACGT	1 cut(s)	423
TasI	AATT	4 cut(s)	267, 278, 774, 1011
TatI	WGTACW	2 cut(s)	19, 82
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	341, 426, 986, 1014
Tru9I	TTAA	4 cut(s)	341, 426, 986, 1014
TscAI	CASTG	5 cut(s)	214, 392, 509, 520, 958
TseI	GCWGC	2 cut(s)	548, 913
TspDTI	ATGAA	3 cut(s)	230, 483, 877
TspGWI	ACGGA	1 cut(s)	832
TspRI	CASTG	5 cut(s)	214, 392, 509, 520, 958
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	3 cut(s)	113, 793, 871
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
ZrmI	AGTACT	2 cut(s)	21, 84
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.