Rw3G016590

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
17651996 .. 17659066
7071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016590.1

Sequence Viewer

Length: 1587 bp
ATGATTCCTGTTATTGCAGTACTACTTTTCCTTGCCTCATCCCTATTCTTTAGCTTTCTTTTACAAAAAAAGAAGCGAGTAGTACTCCCAGCAGTGCCCCCTCTCCCTCCAGGACCAAGCCCATGGCCGATCATTGGGTGTCTGCCAGAGATGTGGAGGAACAGACCAGCATATAAATGGATACATGACCTTCTGAAACAGCTCAACACTGATATTGCCTGTGTACGACTGGGAAATGTTCATGTGATCGTAGTAAGATCACCTGAAATTGCAAGAGAATTTTTGAAGAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTCCCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGTTTTGGTTGCCAACGTGTTTAATCAGTCCAGACTTCGGTGGCTACTCAATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTTTACAGTCAGTGCTCAAACAGTGAGAATGGTTCAGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCAAATGTGATGAGAAGGATGATCTTCAACACGAGGTATTTTGGCAAAGGAAGAGAGGATAGAGGGCCAGGACTTGAAGAAGAAAGACACATCTCTGCGCTTTTCACAATACTCTTGCATTCGTATGCATTTTGTGTATCCGATTACCTTCCATGGTTGAGACCGTTTGACATAGGTGGGCATGAGAAGAAAGTGAGGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAGTACGGAAATGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAAGACCTGCTTGATGTTTTCATCTCACTCAAAGATGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCACTGACCTACAACTTGCCACAGTGGATAATCCTTTCAATTCAGCAGAATGGGCTCTTTCAGAAATGTTGAACCAACCTGATATGCTTACAAAAGCACAAGAGGAACTAAATAGAGTAGTGGGAATCCACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAAGGCTTGTGTCAGAGAATCGCTCAGGCTGCATCCAGCTGCACCATTTAATCTCCCCCATGTCTCATGTGCTGATGCCATAGTAGCAGGCTACTTCATCCCAGAGGGTAGTAATGTTCTTTTGAGTCGTTTAGACCTTGGTCGTAACCCCAAAGTCTGGGAAAACCCCTTTAGATTTGACCCCAAGCGTCATCTAAATGGAGCTGCCAATGAACACGTGGATCTAGGTGAACATGAGCTAAGGTTCATTTCATTTTCTACTGGAAGGAGAGGTTGCCCGGGTGGTATGCTTGGAACAAACATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATGAGATTGACCTCACTGAGCAGGCTCAATCCCTCTTCAAGCTCAATGCGTTGTATGCGCATGCTAAACCTCGCTTGCCTGCTGCTGTGTACCTAATTTAG

Protein Analysis

528

Amino Acids

60.01

Weight (kDa)

9.04

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 504 5.3e-83 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1545
Acc36I ACCTGC 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 1278
AclWI GGATC 2 cut(s) 857, 1350
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 951
AcvI CACGTG 1 cut(s) 1339
AfaI GTAC 6 cut(s) 21, 84, 225, 353, 816, 1577
AfiI CCNNNNNNNGG 3 cut(s) 134, 441, 1278
AflII CTTAAG 1 cut(s) 340
AflIII ACRYGT 2 cut(s) 420, 1336
AgsI TTSAA 9 cut(s) 286, 592, 641, 772, 988, 1021, 1091, 1454, 1525
AjnI CCWGG 2 cut(s) 109, 631
AluBI AGCT 7 cut(s) 54, 202, 929, 1160, 1325, 1360, 1528
AluI AGCT 7 cut(s) 54, 202, 929, 1160, 1325, 1360, 1528
Alw21I GWGCWC 2 cut(s) 509, 833
Alw26I GTCTC 2 cut(s) 718, 1189
AlwI GGATC 2 cut(s) 857, 1350
Ama87I CYCGRG 1 cut(s) 1399
AoxI GGCC 2 cut(s) 125, 629
ApeKI GCWGC 6 cut(s) 548, 913, 1150, 1160, 1325, 1568
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 2 cut(s) 664, 1546
AspS9I GGNCC 3 cut(s) 113, 629, 793
AsuC2I CCSGG 2 cut(s) 1400, 1401
AsuHPI GGTGA 3 cut(s) 252, 544, 1361
AvaI CYCGRG 1 cut(s) 1399
AvaII GGWCC 2 cut(s) 113, 793
BaeGI GKGCMC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 1006
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
BauI CACGAG 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 1339
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 2 cut(s) 509, 833
BbvI GCAGC 6 cut(s) 560, 925, 1137, 1147, 1312, 1555
BccI CCATC 1 cut(s) 902
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 2 cut(s) 111, 633
BciVI GTATCC 2 cut(s) 174, 712
BcnI CCSGG 2 cut(s) 1400, 1401
BcoDI GTCTC 2 cut(s) 718, 1189
BfaI CTAG 2 cut(s) 1346, 1443
BfmI CTRYAG 1 cut(s) 861
BfrI CTTAAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 882
BfuI GTATCC 2 cut(s) 174, 712
BisI GCNGC 6 cut(s) 549, 914, 1151, 1161, 1326, 1569
BlsI GCNGC 6 cut(s) 550, 915, 1152, 1162, 1327, 1570
BmcAI AGTACT 2 cut(s) 21, 84
Bme1390I CCNGG 4 cut(s) 111, 633, 1400, 1401
Bme18I GGWCC 2 cut(s) 113, 793
BmeT110I CYCGRG 1 cut(s) 1399
BmgT120I GGNCC 3 cut(s) 113, 629, 793
BmiI GGNNCC 2 cut(s) 795, 858
BmrFI CCNGG 4 cut(s) 111, 633, 1400, 1401
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 6 cut(s) 317, 754, 892, 1162, 1186, 1422
BmuI ACTGGG 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 1260
BpiI GAAGAC 1 cut(s) 876
BplI GAGNNNNNCTC 4 cut(s) 69, 101, 1128, 1160
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 2 cut(s) 1145, 1361
BpuMI CCSGG 2 cut(s) 1400, 1401
BsaAI YACGTR 1 cut(s) 1339
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 5 cut(s) 122, 716, 1258, 1399, 1479
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 441, 1278
Bse1I ACTGG 2 cut(s) 234, 1387
BseBI CCWGG 2 cut(s) 111, 633
BseDI CCNNGG 5 cut(s) 122, 716, 1258, 1399, 1479
BseGI GGATG 6 cut(s) 38, 588, 769, 1153, 1218, 1492
BseLI CCNNNNNNNGG 3 cut(s) 134, 441, 1278
BseMII CTCAG 2 cut(s) 1159, 1494
BseNI ACTGG 2 cut(s) 234, 1387
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 6 cut(s) 560, 925, 1137, 1147, 1312, 1555
BseYI CCCAGC 2 cut(s) 88, 562
BsgI GTGCAG 1 cut(s) 1146
BshFI GGCC 2 cut(s) 127, 631
BsiHKAI GWGCWC 2 cut(s) 509, 833
BsiHKCI CYCGRG 1 cut(s) 1399
BsiSI CCGG 1 cut(s) 1400
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 134, 441, 1278
BsmAI GTCTC 2 cut(s) 718, 1189
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 2 cut(s) 127, 631
Bso31I GGTCTC 1 cut(s) 718
BsoBI CYCGRG 1 cut(s) 1399
Bsp1286I GDGCHC 4 cut(s) 99, 509, 833, 1006
Bsp143I GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
Bsp19I CCATGG 2 cut(s) 122, 716
BspANI GGCC 2 cut(s) 127, 631
BspCNI CTCAG 2 cut(s) 1158, 1495
BspLI GGNNCC 2 cut(s) 795, 858
BspMI ACCTGC 1 cut(s) 882
BspPI GGATC 2 cut(s) 857, 1350
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 718
BsrI ACTGG 2 cut(s) 234, 1387
BssECI CCNNGG 5 cut(s) 122, 716, 1258, 1399, 1479
BssMI GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
BssSI CACGAG 1 cut(s) 595
BssT1I CCWWGG 4 cut(s) 122, 716, 1258, 1479
Bst2BI CACGAG 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 111, 633
Bst4CI ACNGT 5 cut(s) 500, 515, 729, 973, 1429
Bst6I CTCTTC 3 cut(s) 397, 610, 1526
BstAFI CTTAAG 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 1339
BstC8I GCNNGC 6 cut(s) 1210, 1472, 1509, 1548, 1562, 1566
BstDEI CTNAG 3 cut(s) 1145, 1361, 1503
BstDSI CCRYGG 2 cut(s) 122, 716
BstF5I GGATG 6 cut(s) 38, 588, 769, 1153, 1218, 1492
BstHHI GCGC 2 cut(s) 664, 1546
BstKTI GATC 6 cut(s) 132, 249, 260, 588, 852, 1345
BstMAI GTCTC 2 cut(s) 718, 1189
BstMBI GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
BstMWI GCNNNNNNNGC 5 cut(s) 305, 1001, 1150, 1205, 1541
BstNI CCWGG 2 cut(s) 111, 633
BstNSI RCATGY 3 cut(s) 1084, 1474, 1550
BstPAI GACNNNNGTC 1 cut(s) 1260
BstSCI CCNGG 4 cut(s) 109, 631, 1398, 1399
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 560, 925, 1137, 1147, 1312, 1555
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 1342
BstXI CCANNNNNNTGG 3 cut(s) 123, 153, 325
BstYI RGATCY 1 cut(s) 1342
BsuI GTATCC 2 cut(s) 174, 712
BsuRI GGCC 2 cut(s) 127, 631
BtgI CCRYGG 2 cut(s) 122, 716
BtsCI GGATG 6 cut(s) 38, 588, 769, 1153, 1218, 1492
BtsI GCAGTG 2 cut(s) 99, 392
BtsIMutI CAGTG 9 cut(s) 99, 207, 392, 509, 520, 534, 951, 978, 1500
BveI ACCTGC 1 cut(s) 882
Cac8I GCNNGC 6 cut(s) 1210, 1472, 1509, 1548, 1562, 1566
CfoI GCGC 2 cut(s) 664, 1546
Cfr13I GGNCC 3 cut(s) 113, 629, 793
Cfr9I CCCGGG 1 cut(s) 1399
CseI GACGC 2 cut(s) 305, 1298
Csp6I GTAC 6 cut(s) 20, 83, 224, 352, 815, 1576
CviQI GTAC 6 cut(s) 20, 83, 224, 352, 815, 1576
DdeI CTNAG 3 cut(s) 1145, 1361, 1503
DpnI GATC 6 cut(s) 131, 248, 259, 587, 851, 1344
DpnII GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 397, 610, 1526
EarI CTCTTC 3 cut(s) 397, 610, 1526
Eco130I CCWWGG 4 cut(s) 122, 716, 1258, 1479
Eco24I GRGCYC 1 cut(s) 1006
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 113, 793
Eco57I CTGAAG 1 cut(s) 951
Eco72I CACGTG 1 cut(s) 1339
Eco88I CYCGRG 1 cut(s) 1399
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 109, 631
EcoT14I CCWWGG 4 cut(s) 122, 716, 1258, 1479
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 4 cut(s) 122, 716, 1258, 1479
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 1 cut(s) 356
Fnu4HI GCNGC 6 cut(s) 549, 914, 1151, 1161, 1326, 1569
FokI GGATG 6 cut(s) 25, 595, 776, 1140, 1205, 1499
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 6 cut(s) 549, 914, 1151, 1161, 1326, 1569
FspAI RTGCGCAY 1 cut(s) 1545
FspBI CTAG 2 cut(s) 1346, 1443
FspI TGCGCA 1 cut(s) 1545
GlaI GCGC 2 cut(s) 663, 1545
GluI GCNGC 6 cut(s) 549, 914, 1151, 1161, 1326, 1569
GsaI CCCAGC 2 cut(s) 92, 566
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 2 cut(s) 127, 631
HapII CCGG 1 cut(s) 1400
HgaI GACGC 2 cut(s) 305, 1298
HhaI GCGC 2 cut(s) 664, 1546
Hin6I GCGC 2 cut(s) 662, 1544
HinP1I GCGC 2 cut(s) 662, 1544
HinfI GANTC 5 cut(s) 4, 1074, 1094, 1139, 1246
HpaII CCGG 1 cut(s) 1400
HphI GGTGA 3 cut(s) 252, 544, 1361
Hpy166II GTNNAC 4 cut(s) 224, 1352, 1461, 1576
Hpy188I TCNGA 4 cut(s) 195, 706, 1012, 1136
Hpy188III TCNNGA 5 cut(s) 312, 435, 791, 839, 1091
Hpy8I GTNNAC 4 cut(s) 224, 1352, 1461, 1576
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 200, 573, 722, 1380
HpyCH4III ACNGT 5 cut(s) 500, 515, 729, 973, 1429
HpyCH4IV ACGT 2 cut(s) 420, 1338
HpyCH4V TGCA 8 cut(s) 17, 272, 548, 682, 692, 905, 1153, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 1001, 1150, 1205, 1541
HpyF3I CTNAG 3 cut(s) 1145, 1361, 1503
HpySE526I ACGT 2 cut(s) 420, 1338
HspAI GCGC 2 cut(s) 662, 1544
Kzo9I GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
LmnI GCTCC 4 cut(s) 856, 1322, 1440, 1467
Lsp1109I GCAGC 6 cut(s) 560, 925, 1137, 1147, 1312, 1555
LweI GCATC 6 cut(s) 317, 754, 892, 1162, 1186, 1422
MaeI CTAG 2 cut(s) 1346, 1443
MaeII ACGT 2 cut(s) 420, 1338
MaeIII GTNAC 1 cut(s) 1265
MalI GATC 6 cut(s) 131, 248, 259, 587, 851, 1344
MboI GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
MflI RGATCY 1 cut(s) 1342
MhlI GDGCHC 4 cut(s) 99, 509, 833, 1006
MluCI AATT 5 cut(s) 267, 278, 774, 988, 1581
MlyI GAGTC 1 cut(s) 1255
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 3 cut(s) 341, 426, 1170
MslI CAYNNNNRTG 5 cut(s) 175, 323, 687, 1317, 1427
MspA1I CMGCKG 2 cut(s) 929, 1160
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 1 cut(s) 1400
MspR9I CCNGG 4 cut(s) 111, 633, 1400, 1401
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 2 cut(s) 111, 633
MwoI GCNNNNNNNGC 5 cut(s) 305, 1001, 1150, 1205, 1541
NciI CCSGG 2 cut(s) 1400, 1401
NcoI CCATGG 2 cut(s) 122, 716
NdeII GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
NlaIV GGNNCC 2 cut(s) 795, 858
NsbI TGCGCA 1 cut(s) 1545
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 3 cut(s) 1084, 1474, 1550
PaeI GCATGC 2 cut(s) 1474, 1550
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 4 cut(s) 4, 1074, 1094, 1139
PflMI CCANNNNNTGG 1 cut(s) 1278
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 6 cut(s) 550, 915, 1152, 1162, 1327, 1570
PleI GAGTC 1 cut(s) 1254
PmaCI CACGTG 1 cut(s) 1339
PmlI CACGTG 1 cut(s) 1339
PpsI GAGTC 1 cut(s) 1254
Ppu21I YACGTR 1 cut(s) 1339
PpuMI RGGWCCY 1 cut(s) 793
PshAI GACNNNNGTC 1 cut(s) 1260
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 2 cut(s) 109, 631
PspCI CACGTG 1 cut(s) 1339
PspFI CCCAGC 2 cut(s) 88, 562
PspGI CCWGG 2 cut(s) 109, 631
PspN4I GGNNCC 2 cut(s) 795, 858
PspPI GGNCC 3 cut(s) 113, 629, 793
PspPPI RGGWCCY 1 cut(s) 793
PsuI RGATCY 1 cut(s) 1342
PvuII CAGCTG 2 cut(s) 929, 1160
RsaI GTAC 6 cut(s) 21, 84, 225, 353, 816, 1577
RsaNI GTAC 6 cut(s) 20, 83, 224, 352, 815, 1576
RseI CAYNNNNRTG 5 cut(s) 175, 323, 687, 1317, 1427
SaqAI TTAA 3 cut(s) 341, 426, 1170
SatI GCNGC 6 cut(s) 549, 914, 1151, 1161, 1326, 1569
Sau3AI GATC 6 cut(s) 129, 246, 257, 585, 849, 1342
Sau96I GGNCC 3 cut(s) 113, 629, 793
ScaI AGTACT 2 cut(s) 21, 84
SchI GAGTC 1 cut(s) 1255
ScrFI CCNGG 4 cut(s) 111, 633, 1400, 1401
SduI GDGCHC 4 cut(s) 99, 509, 833, 1006
SfaNI GCATC 6 cut(s) 317, 754, 892, 1162, 1186, 1422
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 113, 793
SmaI CCCGGG 1 cut(s) 1401
SmiMI CAYNNNNRTG 5 cut(s) 175, 323, 687, 1317, 1427
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SphI GCATGC 2 cut(s) 1474, 1550
Sse9I AATT 5 cut(s) 267, 278, 774, 988, 1581
SspMI CTAG 2 cut(s) 1346, 1443
StyD4I CCNGG 4 cut(s) 109, 631, 1398, 1399
StyI CCWWGG 4 cut(s) 122, 716, 1258, 1479
TaaI ACNGT 5 cut(s) 500, 515, 729, 973, 1429
TaiI ACGT 2 cut(s) 423, 1341
TasI AATT 5 cut(s) 267, 278, 774, 988, 1581
TatI WGTACW 2 cut(s) 19, 82
TfiI GAWTC 4 cut(s) 4, 1074, 1094, 1139
Tru1I TTAA 3 cut(s) 341, 426, 1170
Tru9I TTAA 3 cut(s) 341, 426, 1170
TscAI CASTG 9 cut(s) 99, 214, 392, 509, 520, 534, 958, 978, 1507
TseI GCWGC 6 cut(s) 548, 913, 1150, 1160, 1325, 1568
TspDTI ATGAA 7 cut(s) 230, 483, 877, 1207, 1347, 1357, 1362
TspGWI ACGGA 1 cut(s) 832
TspMI CCCGGG 1 cut(s) 1399
TspRI CASTG 9 cut(s) 99, 214, 392, 509, 520, 534, 958, 978, 1507
Van91I CCANNNNNTGG 1 cut(s) 1278
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 113, 793
XapI RAATTY 1 cut(s) 278
XceI RCATGY 3 cut(s) 1084, 1474, 1550
XcmI CCANNNNNNNNNTGG 2 cut(s) 174, 1336
XmaI CCCGGG 1 cut(s) 1399
XspI CTAG 2 cut(s) 1346, 1443
ZrmI AGTACT 2 cut(s) 21, 84
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.