Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

18060651 .. 18061606

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACCTACAACTTGCCACAGTGGATAATCCTTTCAATTCAGCAGAATGGGCTCTTTCAGAAATGCTGAACCAACCTGATATGCTTACAAAAGCACAAGAGGAACTAAATAGGGTAGTGGGAATCCACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAAGGCTTGTGTAAGAGAATCGCTCAGGCTGCATCCAGCTGCACCATTTAATCTGCCCCATGTCTCATGTGCTGATGCCATAGTAGCAGGCTACTTCATCCCAGAGGGTAGTAGTGTTCTTTTGAGTCGTTTAGACCTTGGTCGTAACCCCAAAGTCTGGGAAAACCCCTTTAGATTTGACCCCAAGCGTCATCTAAATGGACCTGCCAATGAACACGTGGATCTAGGTGAACATGAGCTAAGGTTCATTTCATTTTCTACTGGAAGGAGAGGTTGCCCGGGTGGTACGCTTGGAACAAACATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATGAGATTGACCTCACTGAGCAGGCTCAATCCCTCTTCAAGCTCAATGCATTGTATGCGCATGCTAAACCTCGCTTGCCTGCTGCTGTGTACCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

211

Amino Acids

23.58

Weight (kDa)

6.29

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 187	1.5e-47	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	327
AclWI	GGATC	1 cut(s)	399
AcvI	CACGTG	1 cut(s)	388
AfaI	GTAC	2 cut(s)	457, 626
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	37, 140, 503, 574
AluBI	AGCT	3 cut(s)	209, 409, 577
AluI	AGCT	3 cut(s)	209, 409, 577
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	199, 209, 617
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	4, 371
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	4, 371
BanII	GRGCYC	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	186, 196, 604
BcnI	CCSGG	2 cut(s)	449, 450
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	395, 492
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	200, 210, 618
BlsI	GCNGC	3 cut(s)	201, 211, 619
Bme1390I	CCNGG	2 cut(s)	449, 450
Bme18I	GGWCC	2 cut(s)	4, 371
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	4, 371
BmrFI	CCNGG	2 cut(s)	449, 450
BmsI	GCATC	3 cut(s)	211, 235, 471
BoxI	GACNNNNGTC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
Bpu10I	CCTNAGC	2 cut(s)	194, 410
BpuMI	CCSGG	2 cut(s)	449, 450
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	307, 448, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	307, 448, 528
BseGI	GGATG	3 cut(s)	202, 267, 541
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	208, 543
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	186, 196, 604
BsgI	GTGCAG	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	207, 544
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	307, 448, 528
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	307, 528
Bst4CI	ACNGT	2 cut(s)	22, 478
Bst6I	CTCTTC	1 cut(s)	575
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	6 cut(s)	259, 521, 558, 597, 611, 615
BstDEI	CTNAG	3 cut(s)	194, 410, 552
BstF5I	GGATG	3 cut(s)	202, 267, 541
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 199, 254, 590
BstNSI	RCATGY	3 cut(s)	133, 523, 599
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	447, 448
BstV1I	GCAGC	3 cut(s)	186, 196, 604
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	202, 267, 541
BtsIMutI	CAGTG	2 cut(s)	27, 549
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	6 cut(s)	259, 521, 558, 597, 611, 615
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	4, 371
Cfr9I	CCCGGG	1 cut(s)	448
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	456, 625
CviAII	CATG	7 cut(s)	130, 230, 237, 404, 513, 520, 596
CviJI	RGCY	9 cut(s)	53, 176, 199, 209, 261, 409, 496, 560, 577
CviKI_1	RGCY	9 cut(s)	53, 176, 199, 209, 261, 409, 496, 560, 577
CviQI	GTAC	2 cut(s)	456, 625
DdeI	CTNAG	3 cut(s)	194, 410, 552
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	2 cut(s)	307, 528
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	4, 371
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	307, 528
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	307, 528
FaeI	CATG	7 cut(s)	133, 233, 240, 407, 516, 523, 599
FatI	CATG	7 cut(s)	129, 229, 236, 403, 512, 519, 595
Fnu4HI	GCNGC	3 cut(s)	200, 210, 618
FokI	GGATG	3 cut(s)	189, 254, 548
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	200, 210, 618
FspAI	RTGCGCAY	1 cut(s)	594
FspBI	CTAG	2 cut(s)	395, 492
FspI	TGCGCA	1 cut(s)	594
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	3 cut(s)	200, 210, 618
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	7 cut(s)	133, 233, 240, 407, 516, 523, 599
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	4 cut(s)	123, 143, 188, 295
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	401, 510, 625
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	401, 510, 625
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	22, 478
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	202, 212, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 199, 254, 590
HpyF3I	CTNAG	3 cut(s)	194, 410, 552
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	7 cut(s)	133, 233, 240, 407, 516, 523, 599
HspAI	GCGC	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	489, 516
Lsp1109I	GCAGC	3 cut(s)	186, 196, 604
LweI	GCATC	3 cut(s)	211, 235, 471
MaeI	CTAG	2 cut(s)	395, 492
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	491, 562
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	37, 630
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	7 cut(s)	94, 165, 268, 434, 557, 578, 615
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	366, 476
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	449, 450
MwoI	GCNNNNNNNGC	4 cut(s)	50, 199, 254, 590
NciI	CCSGG	2 cut(s)	449, 450
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	133, 233, 240, 407, 516, 523, 599
NsbI	TGCGCA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	3 cut(s)	133, 523, 599
PaeI	GCATGC	2 cut(s)	523, 599
PfeI	GAWTC	3 cut(s)	123, 143, 188
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	201, 211, 619
PleI	GAGTC	1 cut(s)	303
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	4, 371
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	457, 626
RsaNI	GTAC	2 cut(s)	456, 625
RseI	CAYNNNNRTG	2 cut(s)	366, 476
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	200, 210, 618
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	4, 371
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	449, 450
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	3 cut(s)	211, 235, 471
SinI	GGWCC	2 cut(s)	4, 371
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	366, 476
SphI	GCATGC	2 cut(s)	523, 599
Sse9I	AATT	2 cut(s)	37, 630
SspMI	CTAG	2 cut(s)	395, 492
StyD4I	CCNGG	2 cut(s)	447, 448
StyI	CCWWGG	2 cut(s)	307, 528
TaaI	ACNGT	2 cut(s)	22, 478
TaiI	ACGT	1 cut(s)	390
TasI	AATT	2 cut(s)	37, 630
TfiI	GAWTC	3 cut(s)	123, 143, 188
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	27, 556
TseI	GCWGC	3 cut(s)	199, 209, 617
TspDTI	ATGAA	4 cut(s)	256, 396, 406, 411
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	2 cut(s)	27, 556
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	4, 371
XceI	RCATGY	3 cut(s)	133, 523, 599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmaI	CCCGGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	395, 492
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.