Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

33229776 .. 33230054

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1235800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCACCCATATTTTAAGCAGTGGCTACGTGACCACAGGCGTTGCGCCTTGGGGAAGCCAGTGGAAGAAAATGAGAAGGGTCTTGATTGCTGATGTGTTCAATCAGTCTAGGGTTCACTGGCTACTTGGTAAAAGAAATGAAGAAGCTGATAATCTTGTTAAGTTCCTATATAATCAGTGCTCGGTGAATCCAAATGGTTCAGTAGTGAATGTGAAAACTGCAGCCCTATTTTACTCGGGAGGTGTCATGAGAAGGATGATTTTCAACTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

93

Amino Acids

10.42

Weight (kDa)

10.43

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	2 cut(s)	103, 268
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	61, 125
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	61, 125
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	238
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	61, 125
BssECI	CCNNGG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	4 cut(s)	28, 68, 118, 185
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	6 cut(s)	5, 27, 60, 124, 149, 227
CviKI_1	RGCY	6 cut(s)	5, 27, 60, 124, 149, 227
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	253
FaiI	YATR	4 cut(s)	12, 172, 174, 251
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	85, 240, 250
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	72, 249
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	47
LpnPI	CCDG	3 cut(s)	24, 74, 106
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	79, 155
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	17, 162
Msp20I	TGGCCA	1 cut(s)	5
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	17, 162
SatI	GCNGC	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	33, 151, 247, 278
SfcI	CTRYAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	17, 162
Tru9I	TTAA	2 cut(s)	17, 162
TscAI	CASTG	4 cut(s)	28, 68, 125, 185
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	4 cut(s)	28, 68, 125, 185
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.