Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

33918248 .. 33924992

Gene Structure 6745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTGGAGGAATAGACCAGCATACAGATGGATACATGACCTTCTGAAACAGCTCAACACTGATATTGCCTGTGTACGACTAGGAAAAGTTCATGTGATCGCAATCCAATCACCTGAAATTGCCAGAGAATTCTTGAAAAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTGACCACTTAAGTAGTGGGTACTTGACAACAGTTGTTGGACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGTTTTGGTTGCCGACGTGTTGAATCAGTCCAGACTCCGGTGGCTACTCGATAAGAGAAACGATGAAGCGGACAATCTTTTGAAGTTTCTCTACAGTCAGTTCTCGAACAGTGAGAATGGTTCAGTGGTGAATGTGAGAAATGCAGCCCAACATTACTCAGCAAGTGTGATAAGAAGGATGATCTTCAACGCGAGCTACTTTGGTAATGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACATTTGCATCTCTATGTATTCTGCGTATCCGATTACCTTCCATGGCTGAGATCGTTTGACATAGGTGGGCATGAGAAAAAGGTGAGGGATGCTTTGAAAATTATCAACCAGTATCAGGACCCTATTATAGATGAGAGAGTACGAAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGAACTGCTTGCTCGATGTTTTCGTCTCTCTAAAAGGTGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCACTTGGGCTCTATCAGAAATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGATAGTGGGAATTGACATGCTTGTTCAAGAATCTCATATCCTGCATCTCCCTTACATAAGGGCTTGTGCAAGAGAATCGCTCAGGCTGCATCCAGTTGCACCATTCAATATTCCCCATTTTTCCACTGCTGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTCTTCTAAGTCGTTTAGGCCTCGGACGCAACCCCAAAGTCTGGGAAAACCCGAGAGGTTGCATTGGTGGTACGCTTGGGACTACCATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCCTGCCACCCAAGGTGGATAAGATTGACCTCACTGAGGCTCCAACCCTTTTCAAGCTCAATCCTTTGCATGCACATGCTAAACCTCGCTTGCCTGCTGCTATGTACCCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

423

Amino Acids

47.96

Weight (kDa)

9.1

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	19 - 358	3.6e-44	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AccII	CGCG	1 cut(s)	446
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	5 cut(s)	75, 203, 642, 1093, 1259
AfiI	CCNNNNNNNGG	4 cut(s)	291, 616, 1062, 1189
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	52, 450, 758, 1210
AluI	AGCT	4 cut(s)	52, 450, 758, 1210
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	1072
AoxI	GGCC	2 cut(s)	479, 1039
ApeKI	GCWGC	4 cut(s)	398, 742, 934, 1250
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	3 cut(s)	221, 479, 619
AsuC2I	CCSGG	1 cut(s)	1262
AsuHPI	GGTGA	3 cut(s)	102, 394, 595
AvaI	CYCGRG	1 cut(s)	1072
AvaII	GGWCC	2 cut(s)	221, 619
BanII	GRGCYC	1 cut(s)	790
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	4 cut(s)	410, 754, 921, 1237
BccI	CCATC	3 cut(s)	21, 467, 731
BcgI	CGANNNNNNTGC	2 cut(s)	906, 940
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	2 cut(s)	24, 538
BcnI	CCSGG	1 cut(s)	1262
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	2 cut(s)	80, 1128
BfmI	CTRYAG	3 cut(s)	346, 687, 984
BfrI	CTTAAG	1 cut(s)	190
BfuI	GTATCC	2 cut(s)	24, 538
BisI	GCNGC	4 cut(s)	399, 743, 935, 1251
BlsI	GCNGC	4 cut(s)	400, 744, 936, 1252
Bme1390I	CCNGG	2 cut(s)	483, 1262
Bme18I	GGWCC	2 cut(s)	221, 619
BmeT110I	CYCGRG	1 cut(s)	1072
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	221, 479, 619
BmiI	GGNNCC	4 cut(s)	621, 684, 1154, 1194
BmrFI	CCNGG	2 cut(s)	483, 1262
BmsI	GCATC	8 cut(s)	167, 517, 580, 807, 901, 946, 970, 1107
BplI	GAGNNNNNCTC	2 cut(s)	912, 944
Bpu10I	CCTNAGC	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	1262
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	542, 1042, 1164
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	1177, 1207
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 616, 1062, 1189
Bse1I	ACTGG	2 cut(s)	610, 941
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	3 cut(s)	542, 1042, 1164
BseGI	GGATG	5 cut(s)	438, 478, 595, 937, 1002
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	4 cut(s)	291, 616, 1062, 1189
BseMII	CTCAG	5 cut(s)	426, 539, 804, 943, 1179
BseNI	ACTGG	2 cut(s)	610, 941
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	4 cut(s)	410, 754, 921, 1237
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	481, 1041
BsiHKAI	GWGCWC	1 cut(s)	659
BsiHKCI	CYCGRG	1 cut(s)	1072
BsiSI	CCGG	2 cut(s)	292, 1262
BslFI	GGGAC	1 cut(s)	1114
BslI	CCNNNNNNNGG	4 cut(s)	291, 616, 1062, 1189
BsmAI	GTCTC	1 cut(s)	724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	1114
BsnI	GGCC	2 cut(s)	481, 1041
BsoBI	CYCGRG	1 cut(s)	1072
Bsp1286I	GDGCHC	2 cut(s)	659, 790
Bsp143I	GATC	4 cut(s)	96, 435, 551, 675
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	481, 1041
BspCNI	CTCAG	5 cut(s)	425, 540, 805, 942, 1180
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	4 cut(s)	621, 684, 1154, 1194
BspPI	GGATC	1 cut(s)	683
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	610, 941
BssECI	CCNNGG	3 cut(s)	542, 1042, 1164
BssMI	GATC	4 cut(s)	96, 435, 551, 675
BssT1I	CCWWGG	2 cut(s)	542, 1164
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	214, 350, 365, 1114
Bst6I	CTCTTC	2 cut(s)	247, 460
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	7 cut(s)	448, 704, 994, 1157, 1224, 1244, 1248
BstDEI	CTNAG	6 cut(s)	412, 548, 813, 929, 1028, 1188
BstDSI	CCRYGG	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstF5I	GGATG	5 cut(s)	438, 478, 595, 937, 1002
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	4 cut(s)	99, 438, 554, 678
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	4 cut(s)	96, 435, 551, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 934, 989, 1047
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	3 cut(s)	868, 1226, 1232
BstSCI	CCNGG	2 cut(s)	481, 1260
BstSFI	CTRYAG	3 cut(s)	346, 687, 984
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	4 cut(s)	410, 754, 921, 1237
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	2 cut(s)	24, 538
BsuRI	GGCC	2 cut(s)	481, 1041
BtgI	CCRYGG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	5 cut(s)	438, 478, 595, 937, 1002
BtsI	GCAGTG	2 cut(s)	242, 972
BtsIMutI	CAGTG	6 cut(s)	57, 242, 370, 384, 972, 1185
Cac8I	GCNNGC	7 cut(s)	448, 704, 994, 1157, 1224, 1244, 1248
Cfr13I	GGNCC	3 cut(s)	221, 479, 619
CseI	GACGC	2 cut(s)	155, 1056
Csp6I	GTAC	5 cut(s)	74, 202, 641, 1092, 1258
CviAII	CATG	8 cut(s)	35, 92, 543, 572, 865, 1149, 1223, 1229
CviQI	GTAC	5 cut(s)	74, 202, 641, 1092, 1258
DdeI	CTNAG	6 cut(s)	412, 548, 813, 929, 1028, 1188
DpnI	GATC	4 cut(s)	98, 437, 553, 677
DpnII	GATC	4 cut(s)	96, 435, 551, 675
Eam1104I	CTCTTC	2 cut(s)	247, 460
EarI	CTCTTC	2 cut(s)	247, 460
Eco130I	CCWWGG	2 cut(s)	542, 1164
Eco147I	AGGCCT	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	221, 619
Eco57I	CTGAAG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	1072
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	542, 1164
EcoT38I	GRGCYC	1 cut(s)	790
ErhI	CCWWGG	2 cut(s)	542, 1164
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	8 cut(s)	38, 95, 546, 575, 868, 1152, 1226, 1232
FaqI	GGGAC	1 cut(s)	1114
FatI	CATG	8 cut(s)	34, 91, 542, 571, 864, 1148, 1222, 1228
Fnu4HI	GCNGC	4 cut(s)	399, 743, 935, 1251
FokI	GGATG	5 cut(s)	445, 485, 602, 924, 989
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	4 cut(s)	399, 743, 935, 1251
FspBI	CTAG	2 cut(s)	80, 1128
GluI	GCNGC	4 cut(s)	399, 743, 935, 1251
HaeIII	GGCC	2 cut(s)	481, 1041
HapII	CCGG	2 cut(s)	292, 1262
HgaI	GACGC	2 cut(s)	155, 1056
Hin1II	CATG	8 cut(s)	38, 95, 546, 575, 868, 1152, 1226, 1232
HinfI	GANTC	4 cut(s)	277, 288, 878, 923
HpaII	CCGG	2 cut(s)	292, 1262
HphI	GGTGA	3 cut(s)	102, 394, 595
Hpy166II	GTNNAC	2 cut(s)	74, 1146
Hpy188I	TCNGA	4 cut(s)	45, 532, 796, 1046
Hpy188III	TCNNGA	7 cut(s)	133, 162, 285, 358, 617, 665, 875
Hpy8I	GTNNAC	2 cut(s)	74, 1146
Hpy99I	CGWCG	2 cut(s)	149, 272
HpyAV	CCTTC	3 cut(s)	50, 423, 548
HpyCH4III	ACNGT	4 cut(s)	214, 350, 365, 1114
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 934, 989, 1047
HpyF3I	CTNAG	6 cut(s)	412, 548, 813, 929, 1028, 1188
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	8 cut(s)	38, 95, 546, 575, 868, 1152, 1226, 1232
Kzo9I	GATC	4 cut(s)	96, 435, 551, 675
LmnI	GCTCC	4 cut(s)	682, 1125, 1152, 1198
Lsp1109I	GCAGC	4 cut(s)	410, 754, 921, 1237
LweI	GCATC	8 cut(s)	167, 517, 580, 807, 901, 946, 970, 1107
MaeI	CTAG	2 cut(s)	80, 1128
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	98, 437, 553, 677
MboI	GATC	4 cut(s)	96, 435, 551, 675
MboII	GAAGA	9 cut(s)	253, 264, 430, 477, 503, 506, 773, 1016, 1127
MhlI	GDGCHC	2 cut(s)	659, 790
MluCI	AATT	4 cut(s)	117, 128, 600, 858
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	199, 1220
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	5 cut(s)	25, 173, 513, 1112, 1227
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	2 cut(s)	292, 1262
MspR9I	CCNGG	2 cut(s)	483, 1262
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	155, 934, 989, 1047
NciI	CCSGG	1 cut(s)	1262
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	4 cut(s)	96, 435, 551, 675
NlaIII	CATG	8 cut(s)	38, 95, 546, 575, 868, 1152, 1226, 1232
NlaIV	GGNNCC	4 cut(s)	621, 684, 1154, 1194
NspI	RCATGY	3 cut(s)	868, 1226, 1232
PaeI	GCATGC	1 cut(s)	1226
PceI	AGGCCT	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	277, 878, 923
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	4 cut(s)	400, 744, 936, 1252
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	4 cut(s)	621, 684, 1154, 1194
PspPI	GGNCC	3 cut(s)	221, 479, 619
PspPPI	RGGWCCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	5 cut(s)	75, 203, 642, 1093, 1259
RsaNI	GTAC	5 cut(s)	74, 202, 641, 1092, 1258
RseI	CAYNNNNRTG	5 cut(s)	25, 173, 513, 1112, 1227
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	4 cut(s)	399, 743, 935, 1251
Sau3AI	GATC	4 cut(s)	96, 435, 551, 675
Sau96I	GGNCC	3 cut(s)	221, 479, 619
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	483, 1262
SduI	GDGCHC	2 cut(s)	659, 790
SfaNI	GCATC	8 cut(s)	167, 517, 580, 807, 901, 946, 970, 1107
SfcI	CTRYAG	3 cut(s)	346, 687, 984
SinI	GGWCC	2 cut(s)	221, 619
SmiMI	CAYNNNNRTG	5 cut(s)	25, 173, 513, 1112, 1227
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SphI	GCATGC	1 cut(s)	1226
Sse9I	AATT	4 cut(s)	117, 128, 600, 858
SseBI	AGGCCT	1 cut(s)	1041
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	2 cut(s)	80, 1128
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	2 cut(s)	481, 1260
StyI	CCWWGG	2 cut(s)	542, 1164
TaaI	ACNGT	4 cut(s)	214, 350, 365, 1114
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	303, 359, 708
TasI	AATT	4 cut(s)	117, 128, 600, 858
TfiI	GAWTC	3 cut(s)	277, 878, 923
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	6 cut(s)	64, 242, 370, 384, 979, 1192
TseI	GCWGC	4 cut(s)	398, 742, 934, 1250
TspDTI	ATGAA	3 cut(s)	80, 333, 991
TspRI	CASTG	6 cut(s)	64, 242, 370, 384, 979, 1192
Van91I	CCANNNNNTGG	1 cut(s)	1062
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	221, 619
XagI	CCTNNNNNAGG	1 cut(s)	1187
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	3 cut(s)	868, 1226, 1232
XcmI	CCANNNNNNNNNTGG	2 cut(s)	24, 194
XspI	CTAG	2 cut(s)	80, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.