Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

19692416 .. 19694578

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG117000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGCTTTGGTTGCCGACGTGTTTAATCAGTCCAAACTCCGGTGGCTACTCGATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTCTACAGTCAATGCTCAAACAACGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCGAGTGTGATGAGAAGGATGATCTTCAACACGAGATACTTTGGGAAAGGAAGAGAAGATGGAGGGCCAGGACTTGAAGAAGAAAGACACGTCTCTGCGCTTTTCACAATACTCTTGCATTCATATGCATTCTGTGTATCCGATTACCTTCCATGGTTGAGACCCTTTGACATAGGTGGGCATGAGAAGAAGGTGAGGGATGCTTTGAAAATTATTAAGCAATATCAGGACCCCATTATAGATGAGAGAGTACGGAAGTGGAGGCGCTCTAATAAGGAAAATCTGATCAAGGAGCCTGTAGAGGAGGACCTGCTTGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCATTGAACAACATGGAAAAGAGAGCAAAGATCAACAAGTGGGAGAGAGAGTAGGACCTCGAAGAATGACCCACTTGTTTGATTTGAGAGCAAATAGGGAGAGAAGCTTTTCAAGAATTTTTAGTCCCATAAACAAATGGGCACCCAGAAAAGTAGAACCAAAACTCAGATGGAAGACAACAGTGAAAGAGTTGCGAGAAGTGAAAGAAGCCGAGCTCGTTGGCGAACTCTTTGGTAGCGCCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

290

Amino Acids

33.46

Weight (kDa)

9.44

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 211	1.9e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	29, 48, 492
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	16
AflIII	ACRYGT	2 cut(s)	96, 328
AgsI	TTSAA	5 cut(s)	268, 317, 448, 632, 738
AjiI	CACGTC	2 cut(s)	97, 331
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	83, 605, 732, 841
AluI	AGCT	4 cut(s)	83, 605, 732, 841
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	2 cut(s)	337, 394
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	224, 589
ApoI	RAATTY	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	733
AspLEI	GCGC	3 cut(s)	340, 507, 866
AspS9I	GGNCC	4 cut(s)	305, 469, 547, 680
AsuHPI	GGTGA	2 cut(s)	220, 445
AvaII	GGWCC	3 cut(s)	469, 547, 680
BaeGI	GKGCMC	1 cut(s)	769
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BauI	CACGAG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	236, 601
BccI	CCATC	3 cut(s)	293, 578, 789
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	337, 394
BfmI	CTRYAG	2 cut(s)	172, 537
BfoI	RGCGCY	2 cut(s)	508, 867
BfrI	CTTAAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	225, 590
BlsI	GCNGC	2 cut(s)	226, 591
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	3 cut(s)	469, 547, 680
BmgBI	CACGTC	2 cut(s)	97, 331
BmgT120I	GGNCC	4 cut(s)	305, 469, 547, 680
BmiI	GGNNCC	3 cut(s)	471, 534, 768
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	806
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	264, 445
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	805
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	2 cut(s)	236, 601
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	118, 867
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	337, 394
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	2 cut(s)	358, 368
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	769, 843
Bsp143I	GATC	3 cut(s)	261, 525, 655
Bsp19I	CCATGG	1 cut(s)	392
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	471, 534, 768
BspMI	ACCTGC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	766
BspTI	CTTAAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	866
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	261, 525, 655
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	176, 808
Bst6I	CTCTTC	2 cut(s)	73, 286
BstAFI	CTTAAG	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	1 cut(s)	791
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	264, 445
BstH2I	RGCGCY	2 cut(s)	508, 867
BstHHI	GCGC	3 cut(s)	340, 507, 866
BstKTI	GATC	3 cut(s)	264, 528, 658
BstMAI	GTCTC	2 cut(s)	337, 394
BstMBI	GATC	3 cut(s)	261, 525, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	172, 537
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	2 cut(s)	236, 601
BstV2I	GAAGAC	1 cut(s)	806
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	392
BtrI	CACGTC	2 cut(s)	97, 331
BtsCI	GGATG	2 cut(s)	264, 445
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 813
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	868
CfoI	GCGC	3 cut(s)	340, 507, 866
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	4 cut(s)	305, 469, 547, 680
Csp6I	GTAC	3 cut(s)	28, 47, 491
CviAII	CATG	3 cut(s)	393, 422, 638
CviQI	GTAC	3 cut(s)	28, 47, 491
DdeI	CTNAG	1 cut(s)	791
DpnI	GATC	3 cut(s)	263, 527, 657
DpnII	GATC	3 cut(s)	261, 525, 655
Eam1104I	CTCTTC	2 cut(s)	73, 286
EarI	CTCTTC	2 cut(s)	73, 286
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	843
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	3 cut(s)	469, 547, 680
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	841
EcoO109I	RGGNCCY	3 cut(s)	469, 547, 680
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	396, 425, 641
FaiI	YATR	8 cut(s)	364, 366, 394, 413, 423, 479, 639, 755
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	3 cut(s)	392, 421, 637
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	225, 590
FokI	GGATG	2 cut(s)	271, 452
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	2 cut(s)	225, 590
GlaI	GCGC	3 cut(s)	339, 506, 865
GluI	GCNGC	2 cut(s)	225, 590
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	2 cut(s)	508, 867
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	2 cut(s)	118, 867
HhaI	GCGC	3 cut(s)	340, 507, 866
Hin1II	CATG	3 cut(s)	396, 425, 641
Hin6I	GCGC	3 cut(s)	338, 505, 864
HinP1I	GCGC	3 cut(s)	338, 505, 864
HindIII	AAGCTT	1 cut(s)	730
HpaII	CCGG	2 cut(s)	118, 867
HphI	GGTGA	2 cut(s)	220, 445
Hpy188I	TCNGA	3 cut(s)	382, 525, 794
Hpy188III	TCNNGA	2 cut(s)	467, 738
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	249, 398, 424
HpyCH4III	ACNGT	2 cut(s)	176, 808
HpyCH4IV	ACGT	2 cut(s)	96, 330
HpyCH4V	TGCA	4 cut(s)	224, 358, 368, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	791
HpySE526I	ACGT	2 cut(s)	96, 330
Hsp92II	CATG	3 cut(s)	396, 425, 641
HspAI	GCGC	3 cut(s)	338, 505, 864
KroI	GCCGGC	1 cut(s)	866
KroNI	GCCGGC	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	261, 525, 655
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	8 cut(s)	131, 252, 294, 321, 452, 549, 563, 784
Lsp1109I	GCAGC	2 cut(s)	236, 601
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	2 cut(s)	96, 330
MalI	GATC	3 cut(s)	263, 527, 657
MboI	GATC	3 cut(s)	261, 525, 655
MhlI	GDGCHC	2 cut(s)	769, 843
MluCI	AATT	2 cut(s)	450, 741
MnlI	CCTC	7 cut(s)	179, 296, 429, 495, 535, 538, 693
Mph1103I	ATGCAT	1 cut(s)	370
MroNI	GCCGGC	1 cut(s)	866
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	3 cut(s)	17, 102, 456
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	605
MspCI	CTTAAG	1 cut(s)	16
MspI	CCGG	2 cut(s)	118, 867
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	2 cut(s)	358, 368
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	868
NcoI	CCATGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	3 cut(s)	261, 525, 655
NgoMIV	GCCGGC	1 cut(s)	866
NlaIII	CATG	3 cut(s)	396, 425, 641
NlaIV	GGNNCC	3 cut(s)	471, 534, 768
NmeAIII	GCCGAG	1 cut(s)	862
NsiI	ATGCAT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	2 cut(s)	358, 368
PdiI	GCCGGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	733
PkrI	GCNGC	2 cut(s)	226, 591
PpuMI	RGGWCCY	3 cut(s)	469, 547, 680
Psp124BI	GAGCTC	1 cut(s)	843
Psp5II	RGGWCCY	3 cut(s)	469, 547, 680
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	471, 534, 768
PspPI	GGNCC	4 cut(s)	305, 469, 547, 680
PspPPI	RGGWCCY	3 cut(s)	469, 547, 680
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	29, 48, 492
RsaNI	GTAC	3 cut(s)	28, 47, 491
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	17, 102, 456
SatI	GCNGC	2 cut(s)	225, 590
Sau3AI	GATC	3 cut(s)	261, 525, 655
Sau96I	GGNCC	4 cut(s)	305, 469, 547, 680
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	769, 843
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	172, 537
SinI	GGWCC	3 cut(s)	469, 547, 680
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	450, 741
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	176, 808
TaiI	ACGT	2 cut(s)	99, 333
TaqI	TCGA	2 cut(s)	129, 685
TasI	AATT	2 cut(s)	450, 741
Tru1I	TTAA	3 cut(s)	17, 102, 456
Tru9I	TTAA	3 cut(s)	17, 102, 456
TscAI	CASTG	2 cut(s)	68, 813
TseI	GCWGC	2 cut(s)	224, 589
TspDTI	ATGAA	3 cut(s)	159, 351, 553
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	2 cut(s)	68, 813
Vha464I	CTTAAG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	469, 547, 680
XapI	RAATTY	1 cut(s)	741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XmnI	GAANNNNTTC	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.