Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

9815086 .. 9822553

Gene Structure 7468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGAGAGCAGTGGAAGAAAATGAGAAGGATTTTGATTGCCGAAGTGTTTAATCAGTCCAGACTATGGTGGCTACTCGATAAGAGAAACGATGAAGCGGACAATCTTGTGAAGTTTCTCTATAGTCAGTGCTCGAACAATGAGAATGGTTCGGTGGTGAATGTGAGAATTGCAGCTCAACATTACTCAGCAAATGTGATGAGAAGAATGTTCTTCAACACGAGGTACTTTGGCAAAGGGAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAATTACACGTCTCTGCGCTTTTCACATTGGTCTTGCATACGTATGCATTCTGTGTATCTGATTACCTTCCATGGTTGAGACCGTTTGACATAGGTGGGCATGAGAAAAAGGTCAAGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAGTACGAAAGTGGAGGTGCTCAAATAAGGAGAATAGGATCAAGGCGCCTGTAGAGGAGAGCCTGCTCGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCACTGAACTACAGCTTGCCACGTTGGATAATCCCTTCAGTATATCAGAGTGGGCACTATCAGAAATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGATAGTGGGAATCGACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAGGGCTTGTGCAAGAGAATCGCTCCGGCTGCATCCCGTTGCACCATTCAATCTTCCCCATGTTTCCACTGATGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTATTCTAAGTCGTTTAGGCCTCGGACGCAACCCCAAAGTCTGGGAAAACCCGTTGAGATTCGACCCCGAGCGTCATTTAAGTGGAGATGCCAATCAACAGGTGGAGCTGGAAGAACATGAGCTGAGGTTCATTTCATTTACTACTGGAAGGAGAGGTTGCATGGGTGGTACGCTTGGGACTACCATAACTGTGATGCTCTTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTCGATAAGATTGACCTCACTGAGGCTCCAACCCTTTTCAAGCTCAATCCTTTGCATGCACATGCTAAACCTCGCTTGCCTGCTTCTATGTATCCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

402

Amino Acids

45.92

Weight (kDa)

7.2

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 385	1.5e-67	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccB7I	CCANNNNNTGG	2 cut(s)	66, 903
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	482
AcuI	CTGAAG	2 cut(s)	576, 595
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	3 cut(s)	227, 441, 1033
AfiI	CCNNNNNNNGG	3 cut(s)	66, 903, 1129
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	7 cut(s)	217, 266, 397, 716, 796, 1079, 1147
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	6 cut(s)	176, 554, 589, 970, 985, 1150
AluI	AGCT	6 cut(s)	176, 554, 589, 970, 985, 1150
Alw21I	GWGCWC	2 cut(s)	134, 458
Alw26I	GTCTC	2 cut(s)	286, 343
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	2 cut(s)	254, 880
ApeKI	GCWGC	3 cut(s)	173, 538, 775
AspLEI	GCGC	2 cut(s)	289, 484
AspS9I	GGNCC	2 cut(s)	254, 418
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	481
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BauI	CACGAG	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	134, 458
BbvCI	CCTCAGC	1 cut(s)	986
BbvI	GCAGC	3 cut(s)	185, 550, 762
BccI	CCATC	2 cut(s)	242, 527
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	1209
BcoDI	GTCTC	2 cut(s)	286, 343
BfaI	CTAG	1 cut(s)	1068
BfmI	CTRYAG	4 cut(s)	121, 486, 584, 825
BfoI	RGCGCY	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	1209
BisI	GCNGC	3 cut(s)	174, 539, 776
BlsI	GCNGC	3 cut(s)	175, 540, 777
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	254, 418
BmiI	GGNNCC	3 cut(s)	420, 483, 1134
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	6 cut(s)	379, 648, 787, 811, 940, 1047
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
Bpu10I	CCTNAGC	1 cut(s)	986
BsaAI	YACGTR	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	954
BsaHI	GRCGYC	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	341, 883, 1104
BsaWI	WCCGGW	1 cut(s)	1201
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 903, 1129
Bse1I	ACTGG	1 cut(s)	1012
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	341, 883, 1104
BseGI	GGATG	4 cut(s)	253, 394, 778, 843
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	3 cut(s)	66, 903, 1129
BseMII	CTCAG	4 cut(s)	201, 645, 977, 1119
BseNI	ACTGG	1 cut(s)	1012
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	185, 550, 762
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	256, 882
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	2 cut(s)	134, 458
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	772, 1202
BslFI	GGGAC	1 cut(s)	1054
BslI	CCNNNNNNNGG	3 cut(s)	66, 903, 1129
BsmAI	GTCTC	2 cut(s)	286, 343
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	1054
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	256, 882
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	929
Bsp1286I	GDGCHC	3 cut(s)	134, 458, 631
Bsp143I	GATC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	256, 882
BspCNI	CTCAG	4 cut(s)	200, 646, 978, 1120
BspLI	GGNNCC	3 cut(s)	420, 483, 1134
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	1012
BssECI	CCNNGG	3 cut(s)	341, 883, 1104
BssMI	GATC	1 cut(s)	474
BssNI	GRCGYC	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	2 cut(s)	341, 1104
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	354, 1054
BstACI	GRCGYC	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	312
BstC8I	GCNNGC	7 cut(s)	500, 591, 835, 1097, 1164, 1184, 1188
BstDEI	CTNAG	5 cut(s)	187, 654, 869, 986, 1128
BstDSI	CCRYGG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	1127
BstF5I	GGATG	4 cut(s)	253, 394, 778, 843
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	289, 484
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	2 cut(s)	286, 343
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	3 cut(s)	775, 830, 888
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	4 cut(s)	709, 1099, 1166, 1172
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	4 cut(s)	121, 486, 584, 825
BstSLI	GKGCMC	1 cut(s)	631
BstSNI	TACGTA	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	185, 550, 762
BsuI	GTATCC	1 cut(s)	1209
BsuRI	GGCC	2 cut(s)	256, 882
BtgI	CCRYGG	1 cut(s)	341
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	253, 394, 778, 843
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	5 cut(s)	17, 134, 576, 813, 1125
Cac8I	GCNNGC	7 cut(s)	500, 591, 835, 1097, 1164, 1184, 1188
CfoI	GCGC	2 cut(s)	289, 484
Cfr13I	GGNCC	2 cut(s)	254, 418
CseI	GACGC	2 cut(s)	897, 923
Csp6I	GTAC	3 cut(s)	226, 440, 1032
CviQI	GTAC	3 cut(s)	226, 440, 1032
DdeI	CTNAG	5 cut(s)	187, 654, 869, 986, 1128
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
Eco105I	TACGTA	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	341, 1104
Eco147I	AGGCCT	1 cut(s)	882
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	576, 595
Eco88I	CYCGRG	1 cut(s)	929
EcoNI	CCTNNNNNAGG	1 cut(s)	1127
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	341, 1104
EcoT22I	ATGCAT	1 cut(s)	319
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
ErhI	CCWWGG	2 cut(s)	341, 1104
Esp3I	CGTCTC	1 cut(s)	286
FaqI	GGGAC	1 cut(s)	1054
Fnu4HI	GCNGC	3 cut(s)	174, 539, 776
FokI	GGATG	4 cut(s)	260, 401, 765, 830
Fsp4HI	GCNGC	3 cut(s)	174, 539, 776
FspBI	CTAG	1 cut(s)	1068
GlaI	GCGC	2 cut(s)	288, 483
GluI	GCNGC	3 cut(s)	174, 539, 776
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	256, 882
HapII	CCGG	2 cut(s)	772, 1202
HgaI	GACGC	2 cut(s)	897, 923
HhaI	GCGC	2 cut(s)	289, 484
Hin1I	GRCGYC	1 cut(s)	482
Hin6I	GCGC	2 cut(s)	287, 482
HinP1I	GCGC	2 cut(s)	287, 482
HinfI	GANTC	4 cut(s)	699, 719, 764, 921
HpaII	CCGG	2 cut(s)	772, 1202
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	1086
Hpy188I	TCNGA	4 cut(s)	331, 622, 637, 887
Hpy188III	TCNNGA	3 cut(s)	60, 416, 716
Hpy8I	GTNNAC	1 cut(s)	1086
HpyAV	CCTTC	4 cut(s)	21, 347, 619, 1005
HpyCH4III	ACNGT	2 cut(s)	354, 1054
HpyCH4IV	ACGT	3 cut(s)	279, 311, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	775, 830, 888
HpyF3I	CTNAG	5 cut(s)	187, 654, 869, 986, 1128
HpySE526I	ACGT	3 cut(s)	279, 311, 596
Hsp92I	GRCGYC	1 cut(s)	482
HspAI	GCGC	2 cut(s)	287, 482
KasI	GGCGCC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	4 cut(s)	774, 967, 1092, 1138
Lsp1109I	GCAGC	3 cut(s)	185, 550, 762
LweI	GCATC	6 cut(s)	379, 648, 787, 811, 940, 1047
MaeI	CTAG	1 cut(s)	1068
MaeII	ACGT	3 cut(s)	279, 311, 596
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	9 cut(s)	28, 205, 216, 278, 281, 569, 791, 986, 1067
MhlI	GDGCHC	3 cut(s)	134, 458, 631
MluCI	AATT	3 cut(s)	168, 272, 399
Mly113I	GGCGCC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	579, 1160
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	2 cut(s)	51, 941
MslI	CAYNNNNRTG	4 cut(s)	312, 942, 1052, 1167
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	2 cut(s)	772, 1202
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	775, 830, 888
NarI	GGCGCC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	474
NlaIV	GGNNCC	3 cut(s)	420, 483, 1134
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	4 cut(s)	709, 1099, 1166, 1172
PaeI	GCATGC	2 cut(s)	1099, 1166
PceI	AGGCCT	1 cut(s)	882
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	4 cut(s)	699, 719, 764, 921
PflMI	CCANNNNNTGG	2 cut(s)	66, 903
PkrI	GCNGC	3 cut(s)	175, 540, 777
PluTI	GGCGCC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	420, 483, 1134
PspPI	GGNCC	2 cut(s)	254, 418
PspPPI	RGGWCCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	227, 441, 1033
RsaNI	GTAC	3 cut(s)	226, 440, 1032
RseI	CAYNNNNRTG	4 cut(s)	312, 942, 1052, 1167
SaqAI	TTAA	2 cut(s)	51, 941
SatI	GCNGC	3 cut(s)	174, 539, 776
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	2 cut(s)	254, 418
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	3 cut(s)	134, 458, 631
SfaNI	GCATC	6 cut(s)	379, 648, 787, 811, 940, 1047
SfcI	CTRYAG	4 cut(s)	121, 486, 584, 825
SfoI	GGCGCC	1 cut(s)	483
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	4 cut(s)	312, 942, 1052, 1167
SnaBI	TACGTA	1 cut(s)	312
SphI	GCATGC	2 cut(s)	1099, 1166
Sse9I	AATT	3 cut(s)	168, 272, 399
SseBI	AGGCCT	1 cut(s)	882
SsiI	CCGC	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	1 cut(s)	1068
StuI	AGGCCT	1 cut(s)	882
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	341, 1104
TaaI	ACNGT	2 cut(s)	354, 1054
TaiI	ACGT	3 cut(s)	282, 314, 599
TaqI	TCGA	6 cut(s)	78, 134, 504, 702, 924, 1110
TasI	AATT	3 cut(s)	168, 272, 399
TfiI	GAWTC	4 cut(s)	699, 719, 764, 921
Tru1I	TTAA	2 cut(s)	51, 941
Tru9I	TTAA	2 cut(s)	51, 941
TscAI	CASTG	5 cut(s)	17, 134, 583, 820, 1132
TseI	GCWGC	3 cut(s)	173, 538, 775
TspDTI	ATGAA	5 cut(s)	108, 502, 832, 982, 987
TspRI	CASTG	5 cut(s)	17, 134, 583, 820, 1132
Van91I	CCANNNNNTGG	2 cut(s)	66, 903
VpaK11BI	GGWCC	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	1127
XceI	RCATGY	4 cut(s)	709, 1099, 1166, 1172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XspI	CTAG	1 cut(s)	1068
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.