Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

21108713 .. 21109535

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGCCGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGCTTTAGTTGCCAATGTGTTTAATCAGTCTAGACTCCGGTGGCTACTCGATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTCTACAGTCAGTGCTCAAACAACGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACCCAGCGAGTGTGATGAGAAGGATGATCTTCAACACGAGGTACTTTGGGAAAGGAAGAGAAGATGGAGGGCCAGGACTTGAAGAAGAAAGACACGTCTCTGCACTTTTCACAATACTCTTGCATTCATATGCATTCTGTGTATCCGATTACCTTCCATGGTTGAGACCTTTTGACATAGGTGGGCATGAGAAGAAGGTGAGGGATGCTTTGAAAATTATTCAGCAGTATCAGGATCCCATTATAGATGAGAGAGTACGGAAGTGGAGGCACTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTCGATGTTTTCATCTCACTCAAAGGTGAAGATGGGCAGCCTTTATTATCAACTGAAGAAATCAAAGCACAAATCACTGTAAGATATTCTTATATAGATCCACAACTGTTAAGCTCAACTGCCTTGAAAGTGATAATTGCATTTGCATGTAAGTCATATAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

239

Amino Acids

27.51

Weight (kDa)

8.87

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 210	5.9e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	464, 477, 533, 644
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	4 cut(s)	29, 48, 278, 492
AflII	CTTAAG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	268, 317, 448, 679
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	83, 666
AluI	AGCT	2 cut(s)	83, 666
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	337, 394
AlwI	GGATC	4 cut(s)	464, 477, 533, 644
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	224, 589
AspS9I	GGNCC	2 cut(s)	305, 547
AsuHPI	GGTGA	3 cut(s)	220, 445, 590
AvaII	GGWCC	1 cut(s)	547
BamHI	GGATCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BauI	CACGAG	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	236, 601
BccI	CCATC	2 cut(s)	293, 578
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	337, 394
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	172, 537
BfrI	CTTAAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	225, 590
BlsI	GCNGC	2 cut(s)	226, 591
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	547
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	305, 547
BmiI	GGNNCC	2 cut(s)	471, 534
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	264, 445
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	236, 601
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	337, 394
BsmBI	CGTCTC	1 cut(s)	337
BsmI	GAATGC	2 cut(s)	358, 368
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	261, 469, 525, 649
Bsp19I	CCATGG	1 cut(s)	392
BspANI	GGCC	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	471, 534
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	4 cut(s)	464, 477, 533, 644
BspQI	GCTCTTC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	4 cut(s)	261, 469, 525, 649
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	176, 631, 660
Bst6I	CTCTTC	2 cut(s)	73, 286
BstAFI	CTTAAG	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	264, 445
BstKTI	GATC	4 cut(s)	264, 472, 528, 652
BstMAI	GTCTC	2 cut(s)	337, 394
BstMBI	GATC	4 cut(s)	261, 469, 525, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	172, 537
BstV1I	GCAGC	2 cut(s)	236, 601
BstX2I	RGATCY	2 cut(s)	469, 649
BstYI	RGATCY	2 cut(s)	469, 649
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	264, 445
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 185, 627
BveI	ACCTGC	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	305, 547
Csp6I	GTAC	4 cut(s)	28, 47, 277, 491
CviAII	CATG	3 cut(s)	393, 422, 699
CviJI	RGCY	8 cut(s)	41, 83, 124, 227, 307, 535, 592, 666
CviKI_1	RGCY	8 cut(s)	41, 83, 124, 227, 307, 535, 592, 666
CviQI	GTAC	4 cut(s)	28, 47, 277, 491
DpnI	GATC	4 cut(s)	263, 471, 527, 651
DpnII	GATC	4 cut(s)	261, 469, 525, 649
Eam1104I	CTCTTC	2 cut(s)	73, 286
EarI	CTCTTC	2 cut(s)	73, 286
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	396, 425, 702
FalI	AAGNNNNNCTT	2 cut(s)	625, 657
FatI	CATG	3 cut(s)	392, 421, 698
FauNDI	CATATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	225, 590
FokI	GGATG	2 cut(s)	271, 452
Fsp4HI	GCNGC	2 cut(s)	225, 590
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	225, 590
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	396, 425, 702
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	220, 445, 590
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	111, 467, 515
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	249, 398, 424
HpyCH4III	ACNGT	3 cut(s)	176, 631, 660
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	6 cut(s)	224, 338, 358, 368, 692, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	396, 425, 702
Kzo9I	GATC	4 cut(s)	261, 469, 525, 649
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	8 cut(s)	131, 252, 294, 321, 452, 500, 549, 563
Lsp1109I	GCAGC	2 cut(s)	236, 601
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	330
MalI	GATC	4 cut(s)	263, 471, 527, 651
MboI	GATC	4 cut(s)	261, 469, 525, 649
MflI	RGATCY	2 cut(s)	469, 649
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	2 cut(s)	450, 687
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	179, 267, 296, 429, 495, 535, 538
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	3 cut(s)	17, 102, 662
MslI	CAYNNNNRTG	2 cut(s)	363, 697
MspCI	CTTAAG	1 cut(s)	16
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	2 cut(s)	358, 368
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	4 cut(s)	261, 469, 525, 649
NlaIII	CATG	3 cut(s)	396, 425, 702
NlaIV	GGNNCC	2 cut(s)	471, 534
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	702
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	2 cut(s)	358, 368
PkrI	GCNGC	2 cut(s)	226, 591
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	471, 534
PspPI	GGNCC	2 cut(s)	305, 547
PspPPI	RGGWCCY	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	469, 649
RsaI	GTAC	4 cut(s)	29, 48, 278, 492
RsaNI	GTAC	4 cut(s)	28, 47, 277, 491
RseI	CAYNNNNRTG	2 cut(s)	363, 697
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	17, 102, 662
SatI	GCNGC	2 cut(s)	225, 590
Sau3AI	GATC	4 cut(s)	261, 469, 525, 649
Sau96I	GGNCC	2 cut(s)	305, 547
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	172, 537
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	363, 697
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	450, 687
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	176, 631, 660
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	129, 555
TasI	AATT	2 cut(s)	450, 687
Tru1I	TTAA	3 cut(s)	17, 102, 662
Tru9I	TTAA	3 cut(s)	17, 102, 662
TscAI	CASTG	3 cut(s)	68, 185, 634
TseI	GCWGC	2 cut(s)	224, 589
TspDTI	ATGAA	3 cut(s)	159, 351, 553
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	3 cut(s)	68, 185, 634
Vha464I	CTTAAG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	547
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	702
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.