Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

116070 .. 116759

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000449.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgactccttaccggacagctgttgtacctcggggagagcagtggaagaaaatgagaagagttttggttgccgacgtgttgaatcagtccagactccggtggctactcgataagagaaatgatgaagcggacactcttgtgaggtttctctatagtcagtgctcgaacaacgagaatggggtggtgaatgtgagaaatgcaacccaacattactcagcgagtgtgatgagaaggatgatcttcaacacgaggtactttggcaatggaagagaggatggagggccaggacttgaagaagaaagacacatctctgcgcttttcacaatactcttgcatctctatgcattctatgtatccgattaccttccatggctgagaccgtttgacataggtgggcatgagaaaaaggtgagggatgctttgaaaattatcaagcagtatcaagaccctattatagatgagagagtacgaaagtggaggtgctctaatcaggaaaataggatcaaggagcctgtagaggaggacttgctcgatgttttcatctctctcaaagatgcagatgggcaacctttattatctgctgaagaaatcaaagcacaaatcaccgtaagatattcttatctctactactataattggaggccctcttttggtgtcaaagggcttcaccaaattttgaattgcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

229

Amino Acids

27.02

Weight (kDa)

9.03

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	3 cut(s)	27, 254, 468
AfiI	CCNNNNNNNGG	2 cut(s)	96, 650
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	82, 244, 293, 424, 679
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	283
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	2 cut(s)	164, 485
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	281, 641
ApoI	RAATTY	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	281, 642
AsuHPI	GGTGA	4 cut(s)	196, 421, 595, 659
AvaI	CYCGRG	1 cut(s)	30
BauI	CACGAG	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	164, 485
BccI	CCATC	2 cut(s)	269, 554
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	370
BfmI	CTRYAG	2 cut(s)	151, 513
BfuI	GTATCC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	281, 642
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	3 cut(s)	343, 406, 544
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	29, 368
BsaWI	WCCGGW	2 cut(s)	12, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 650
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	29, 368
BseGI	GGATG	3 cut(s)	240, 280, 421
BseLI	CCNNNNNNNGG	2 cut(s)	96, 650
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	228, 365
BseRI	GAGGAG	1 cut(s)	533
BshFI	GGCC	2 cut(s)	283, 643
BsiHKAI	GWGCWC	2 cut(s)	164, 485
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	13, 97
BslI	CCNNNNNNNGG	2 cut(s)	96, 650
BsmAI	GTCTC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	283, 643
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	164, 485
Bsp143I	GATC	2 cut(s)	237, 501
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	283, 643
BspCNI	CTCAG	2 cut(s)	227, 366
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	29, 368
BssMI	GATC	2 cut(s)	237, 501
BssSI	CACGAG	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	381, 607
Bst6I	CTCTTC	2 cut(s)	52, 262
BstDEI	CTNAG	2 cut(s)	214, 374
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	240, 280, 421
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	240, 504
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	237, 501
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	151, 513
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	283, 643
BtgI	CCRYGG	1 cut(s)	368
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	240, 280, 421
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 164
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	281, 642
Csp6I	GTAC	3 cut(s)	26, 253, 467
CviAII	CATG	2 cut(s)	369, 398
CviJI	RGCY	7 cut(s)	20, 103, 283, 373, 511, 643, 664
CviKI_1	RGCY	7 cut(s)	20, 103, 283, 373, 511, 643, 664
CviQI	GTAC	3 cut(s)	26, 253, 467
DdeI	CTNAG	2 cut(s)	214, 374
DpnI	GATC	2 cut(s)	239, 503
DpnII	GATC	2 cut(s)	237, 501
Eam1104I	CTCTTC	2 cut(s)	52, 262
EarI	CTCTTC	2 cut(s)	52, 262
Eco130I	CCWWGG	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	2 cut(s)	372, 401
FaiI	YATR	9 cut(s)	153, 342, 351, 370, 389, 399, 455, 633, 688
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	2 cut(s)	368, 397
FokI	GGATG	3 cut(s)	247, 287, 428
GlaI	GCGC	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	283, 643
HapII	CCGG	2 cut(s)	13, 97
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	372, 401
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	3 cut(s)	4, 82, 93
HpaII	CCGG	2 cut(s)	13, 97
HphI	GGTGA	4 cut(s)	196, 421, 595, 659
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	90, 443, 491
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	225, 374
HpyCH4III	ACNGT	2 cut(s)	381, 607
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	200, 334, 344, 557
HpyF3I	CTNAG	2 cut(s)	214, 374
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	372, 401
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	237, 501
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	7 cut(s)	26, 103, 110, 270, 297, 476, 525
LweI	GCATC	3 cut(s)	343, 406, 544
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	239, 503
MboI	GATC	2 cut(s)	237, 501
MboII	GAAGA	7 cut(s)	58, 69, 232, 279, 305, 308, 596
MhlI	GDGCHC	2 cut(s)	164, 485
MluCI	AATT	4 cut(s)	426, 634, 672, 679
MlyI	GAGTC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	346
MslI	CAYNNNNRTG	2 cut(s)	137, 339
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	13, 97
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	237, 501
NlaIII	CATG	2 cut(s)	372, 401
NlaIV	GGNNCC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	137
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	281, 642
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	3 cut(s)	27, 254, 468
RsaNI	GTAC	3 cut(s)	26, 253, 467
RseI	CAYNNNNRTG	2 cut(s)	137, 339
Sau3AI	GATC	2 cut(s)	237, 501
Sau96I	GGNCC	2 cut(s)	281, 642
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	164, 485
SfaNI	GCATC	3 cut(s)	343, 406, 544
SfcI	CTRYAG	2 cut(s)	151, 513
SmiMI	CAYNNNNRTG	2 cut(s)	137, 339
Sse9I	AATT	4 cut(s)	426, 634, 672, 679
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	381, 607
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	108, 164, 531
TasI	AATT	4 cut(s)	426, 634, 672, 679
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	2 cut(s)	47, 164
TspDTI	ATGAA	2 cut(s)	138, 529
TspRI	CASTG	2 cut(s)	47, 164
XapI	RAATTY	1 cut(s)	672
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.