Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Reverse (-)

21087467 .. 21088089

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCTCTTTCGAAATGCCGAACCAACCCGAGATGCTTACAAAATCACAAGAGGAACTAAATAGGGTAGTGGGAATCCACATGCTTGTTCAAGAATCTCATATCCCTCATCTCCCTTACATAAGGGCTTGTGCTACTTCATCCCAAAGGGCAGTAGTGTTCGGTCGTTTAGACCTTGGTCGTAACCCCAAAGTCTGGGAAAACCCCTTTAGATTTGACCCCAAGCGTCATCTAAATGGAGCTGCCAATGAACACGTGGATCTAGGTGAACATGAGCTAAGGCTTCTTCAAGGGTTTACATGGAGTATGCCACCCAAGGTGGATGAGATTGACCTCATTGAGCAAGCTCAATCCCTCTTCAAGCTCAATGAGTTGTATGCGCATGCTAAACCTCGCTTGCTGCCGCCGTGTACCCAATTCGTATGTTCCCGCAGCAAACTGCATACAAAAACCCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

153

Amino Acids

17.53

Weight (kDa)

7.82

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	2 cut(s)	404, 430
AclWI	GGATC	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	92, 290, 361
AluBI	AGCT	4 cut(s)	242, 277, 347, 364
AluI	AGCT	4 cut(s)	242, 277, 347, 364
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	242, 400, 432
AspLEI	GCGC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	229, 387, 444
BceAI	ACGGC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	263, 460
BisI	GCNGC	4 cut(s)	243, 401, 404, 433
BlsI	GCNGC	4 cut(s)	244, 402, 405, 434
BmeT110I	CYCGRG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	175, 315, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	175, 315, 454
BseGI	GGATG	2 cut(s)	140, 328
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	229, 387, 444
Bsh1285I	CGRYCG	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	404, 430
BspPI	GGATC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	175, 315, 454
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	3 cut(s)	175, 315, 454
Bst6I	CTCTTC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	345, 384, 398
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	140, 328
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	166
BstNSI	RCATGY	2 cut(s)	85, 386
BstPAI	GACNNNNGTC	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	229, 387, 444
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	140, 328
Cac8I	GCNNGC	3 cut(s)	345, 384, 398
CfoI	GCGC	1 cut(s)	382
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	4 cut(s)	82, 272, 300, 383
CviJI	RGCY	8 cut(s)	6, 128, 242, 277, 283, 347, 364, 459
CviKI_1	RGCY	8 cut(s)	6, 128, 242, 277, 283, 347, 364, 459
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	3 cut(s)	175, 315, 454
Eco24I	GRGCYC	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	29
EcoT14I	CCWWGG	3 cut(s)	175, 315, 454
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	175, 315, 454
FaeI	CATG	4 cut(s)	85, 275, 303, 386
FatI	CATG	4 cut(s)	81, 271, 299, 382
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	243, 401, 404, 433
FokI	GGATG	2 cut(s)	127, 335
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	243, 401, 404, 433
FspAI	RTGCGCAY	1 cut(s)	381
FspBI	CTAG	2 cut(s)	263, 460
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	243, 401, 404, 433
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	85, 275, 303, 386
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	2 cut(s)	75, 95
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	269, 297, 411
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	3 cut(s)	269, 297, 411
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	85, 275, 303, 386
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	1 cut(s)	181
Lsp1109I	GCAGC	3 cut(s)	229, 387, 444
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	2 cut(s)	263, 460
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	278, 349
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	416
MnlI	CCTC	5 cut(s)	46, 117, 344, 365, 402
MslI	CAYNNNNRTG	1 cut(s)	234
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	85, 275, 303, 386
NsbI	TGCGCA	1 cut(s)	381
NspI	RCATGY	2 cut(s)	85, 386
NspV	TTCGAA	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	75, 95
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	244, 402, 405, 434
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	4 cut(s)	243, 401, 404, 433
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	404, 430
SspMI	CTAG	2 cut(s)	263, 460
StyI	CCWWGG	3 cut(s)	175, 315, 454
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	416
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	75, 95
TseI	GCWGC	3 cut(s)	242, 400, 432
TspDTI	ATGAA	2 cut(s)	129, 264
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	2 cut(s)	85, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	2 cut(s)	263, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.