Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

14517691 .. 14520642

Gene Structure 2952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATTCCTATTATTGCAGTATTGCTTTTCTTTGCCTCATCCATCTTTTTAGGCTTTCTTATCCAAAAAACAAAGCGAGTAGTACTCCCACCTGTGCCACCTCTCCCTCCAGGACCCAGCCCATGGCCGATCATCGGATGTGTACCAGAGATGTGGAGGAACAGACCAGCTTACAGATGGATACATGACATTCTGAAACAGCTCAACACTGATATTGCATGTGTACGACTAGGAAAAGTTCATGTGATAGCAATCAAATCACTTGAAATTGCCAGAGAATTCTTGAAAAAACATGACGTTGTTTTCGCATCACGACCCACTACTATGGCTACTCACTACTTAAGTAATGGGTACTTGACAACAGCTTTTGCACCTTTGGGAGAGCATTGGAAGAAAATGAAAAGAGTTTTGGTTACCGACGTGTTGAATCAGTCCAGACTCCAGTGGCTACTCGATAAGAGAAACGATGAAGCGGACAATCTTGTGAAGTTTCTCTACAGTCAGTGCTCGAACAGTGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCCCAACATTACTCAGCGAATGTGATAAGAAGGATGATCTTCAACACGAGGTACTTTGGCAATGGAAGGGAGGATGGAGGACCAGGACTTGAAGAGAGACATGTCTCTGCGCTTTTCACAATACTCTTGCATCTCAATGTGTTCTATGTATCCGATTACCTTCCATGGCTGAGACCGTTTGACATAGGTGGGCATGAGAAAAAGGTGAGGGATGCTTTGAAAATTATCAAGCAATATGAGGACCCTATTATAGATGAGAGAGTACGAAAGTGGAGGTGCTCTAATCAGGAAAATTGGATCAAGGAGCCTGTAGAGGAGAACTTGCTCCATGTTTTCATCTCTCTCAAAGGTGCAGATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

303

Amino Acids

34.91

Weight (kDa)

9.44

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	36 - 277	8.8e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	6 cut(s)	84, 144, 225, 353, 602, 813
AfiI	CCNNNNNNNGG	2 cut(s)	123, 134
AflII	CTTAAG	1 cut(s)	340
AflIII	ACRYGT	2 cut(s)	420, 649
AgsI	TTSAA	6 cut(s)	266, 286, 427, 592, 641, 769
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	109, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	170, 202, 365
AluI	AGCT	3 cut(s)	170, 202, 365
Alw21I	GWGCWC	2 cut(s)	509, 830
Alw26I	GTCTC	3 cut(s)	640, 658, 715
AlwI	GGATC	1 cut(s)	854
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	3 cut(s)	113, 629, 790
AsuHPI	GGTGA	2 cut(s)	544, 766
AvaII	GGWCC	3 cut(s)	113, 629, 790
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	509, 830
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	4 cut(s)	50, 171, 617, 899
BciT130I	CCWGG	2 cut(s)	111, 633
BciVI	GTATCC	2 cut(s)	174, 709
BcoDI	GTCTC	3 cut(s)	640, 658, 715
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	496, 858
BfrI	CTTAAG	1 cut(s)	340
BfuI	GTATCC	2 cut(s)	174, 709
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	111, 633
Bme18I	GGWCC	3 cut(s)	113, 629, 790
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	113, 629, 790
BmiI	GGNNCC	3 cut(s)	115, 792, 855
BmrFI	CCNGG	2 cut(s)	111, 633
BmsI	GCATC	3 cut(s)	317, 688, 751
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	2 cut(s)	93, 425
BsaBI	GATNNNNATC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	122, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 134
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	111, 633
BseDI	CCNNGG	2 cut(s)	122, 713
BseGI	GGATG	5 cut(s)	38, 143, 588, 628, 766
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	123, 134
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	576, 710
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	509, 830
BslI	CCNNNNNNNGG	2 cut(s)	123, 134
BsmAI	GTCTC	3 cut(s)	640, 658, 715
BsnI	GGCC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	509, 830
Bsp143I	GATC	3 cut(s)	129, 585, 846
Bsp19I	CCATGG	2 cut(s)	122, 713
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	575, 711
BspLI	GGNNCC	3 cut(s)	115, 792, 855
BspPI	GGATC	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	122, 713
BssMI	GATC	3 cut(s)	129, 585, 846
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	2 cut(s)	122, 713
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	111, 633
Bst4CI	ACNGT	3 cut(s)	500, 515, 726
Bst6I	CTCTTC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	562, 719
BstDSI	CCRYGG	2 cut(s)	122, 713
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	5 cut(s)	38, 143, 588, 628, 766
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	3 cut(s)	132, 588, 849
BstMAI	GTCTC	3 cut(s)	640, 658, 715
BstMBI	GATC	3 cut(s)	129, 585, 846
BstNI	CCWGG	2 cut(s)	111, 633
BstNSI	RCATGY	2 cut(s)	222, 653
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	109, 631
BstSFI	CTRYAG	2 cut(s)	496, 858
BstV1I	GCAGC	1 cut(s)	560
BstXI	CCANNNNNNTGG	2 cut(s)	153, 325
BsuI	GTATCC	2 cut(s)	174, 709
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	122, 713
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	38, 143, 588, 628, 766
BtsIMutI	CAGTG	4 cut(s)	207, 449, 509, 520
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	3 cut(s)	113, 629, 790
Csp6I	GTAC	6 cut(s)	83, 143, 224, 352, 601, 812
CviAII	CATG	9 cut(s)	123, 185, 219, 242, 293, 650, 714, 743, 878
CviQI	GTAC	6 cut(s)	83, 143, 224, 352, 601, 812
DdeI	CTNAG	2 cut(s)	562, 719
DpnI	GATC	3 cut(s)	131, 587, 848
DpnII	GATC	3 cut(s)	129, 585, 846
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	2 cut(s)	122, 713
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	3 cut(s)	113, 629, 790
Eco91I	GGTNACC	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	113, 790
EcoO65I	GGTNACC	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	109, 631
EcoT14I	CCWWGG	2 cut(s)	122, 713
ErhI	CCWWGG	2 cut(s)	122, 713
FaeI	CATG	9 cut(s)	126, 188, 222, 245, 296, 653, 717, 746, 881
FatI	CATG	9 cut(s)	122, 184, 218, 241, 292, 649, 713, 742, 877
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	5 cut(s)	25, 150, 595, 635, 773
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	1 cut(s)	549
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	93, 425
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	9 cut(s)	126, 188, 222, 245, 296, 653, 717, 746, 881
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HinfI	GANTC	3 cut(s)	4, 427, 438
HphI	GGTGA	2 cut(s)	544, 766
Hpy166II	GTNNAC	2 cut(s)	143, 224
Hpy188I	TCNGA	3 cut(s)	137, 195, 703
Hpy188III	TCNNGA	4 cut(s)	283, 312, 435, 836
Hpy8I	GTNNAC	2 cut(s)	143, 224
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	573, 609, 719
HpyCH4III	ACNGT	3 cut(s)	500, 515, 726
HpyCH4IV	ACGT	2 cut(s)	297, 420
HpyCH4V	TGCA	6 cut(s)	17, 218, 371, 548, 679, 902
HpyF3I	CTNAG	2 cut(s)	562, 719
HpySE526I	ACGT	2 cut(s)	297, 420
Hsp92II	CATG	9 cut(s)	126, 188, 222, 245, 296, 653, 717, 746, 881
HspAI	GCGC	1 cut(s)	659
Kzo9I	GATC	3 cut(s)	129, 585, 846
LmnI	GCTCC	2 cut(s)	853, 879
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	3 cut(s)	317, 688, 751
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	297, 420
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	131, 587, 848
MboI	GATC	3 cut(s)	129, 585, 846
MboII	GAAGA	3 cut(s)	403, 580, 653
MhlI	GDGCHC	2 cut(s)	509, 830
MluCI	AATT	4 cut(s)	267, 278, 771, 841
MlyI	GAGTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	2 cut(s)	323, 684
MspCI	CTTAAG	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	111, 633
MvaI	CCWGG	2 cut(s)	111, 633
NcoI	CCATGG	2 cut(s)	122, 713
NdeII	GATC	3 cut(s)	129, 585, 846
NlaIII	CATG	9 cut(s)	126, 188, 222, 245, 296, 653, 717, 746, 881
NlaIV	GGNNCC	3 cut(s)	115, 792, 855
NspI	RCATGY	2 cut(s)	222, 653
PciI	ACATGT	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	4, 427
PflMI	CCANNNNNTGG	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	2 cut(s)	113, 790
PscI	ACATGT	1 cut(s)	649
Psp5II	RGGWCCY	2 cut(s)	113, 790
Psp6I	CCWGG	2 cut(s)	109, 631
PspEI	GGTNACC	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	109, 631
PspN4I	GGNNCC	3 cut(s)	115, 792, 855
PspPI	GGNCC	3 cut(s)	113, 629, 790
PspPPI	RGGWCCY	2 cut(s)	113, 790
RsaI	GTAC	6 cut(s)	84, 144, 225, 353, 602, 813
RsaNI	GTAC	6 cut(s)	83, 143, 224, 352, 601, 812
RseI	CAYNNNNRTG	2 cut(s)	323, 684
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	3 cut(s)	129, 585, 846
Sau96I	GGNCC	3 cut(s)	113, 629, 790
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	111, 633
SduI	GDGCHC	2 cut(s)	509, 830
SfaNI	GCATC	3 cut(s)	317, 688, 751
SfcI	CTRYAG	2 cut(s)	496, 858
SinI	GGWCC	3 cut(s)	113, 629, 790
SmiMI	CAYNNNNRTG	2 cut(s)	323, 684
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	267, 278, 771, 841
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	109, 631
StyI	CCWWGG	2 cut(s)	122, 713
TaaI	ACNGT	3 cut(s)	500, 515, 726
TaiI	ACGT	2 cut(s)	300, 423
TaqI	TCGA	2 cut(s)	453, 509
TasI	AATT	4 cut(s)	267, 278, 771, 841
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	4, 427
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	4 cut(s)	214, 449, 509, 520
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	4 cut(s)	230, 413, 483, 874
TspRI	CASTG	4 cut(s)	214, 449, 509, 520
Van91I	CCANNNNNTGG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	3 cut(s)	113, 629, 790
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	222, 653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.