Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

36420654 .. 36423297

Gene Structure 2644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGGAGGAACAGACCAGCATACAGATGGATACATGACCTTCTGAAACATCTCAACACTGATATTGTCTGTGTACGACTAGGAAAAGTTCATGTGATCGCAGTCAAATCACCTGAAATTGCCAGAGAATTCTTGAAAAAACACGACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTCACCACTTTAGTAGTGCGTACTTGACAACAGTTGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAGAAGAGTTTTGGCTGTCGACGTGTTGAATCAGTCCAGACTCCAGTGGCTACTCGATAAGAGAAACGATGAAGCGGACAATCTTGTGAAGTGTCTCTACAGTCAATGCTCGAACAACGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAACCCAACATTACTCAACGAGTGTGATAAGAAGGATGATCTTCAACACGAGGTACTTTGGCAATGGAAGAGAGGATGGAGGGCCAGGACTTGAAGAAGAAAGACACGTCTCTGCGCTTTTCACAATACTCTTGCATACGTATGCATTCTGTGTATCCGATTACCTTCCATGGCTGAGACCTTTTGACATAGGTGGGGATGAGAAGAAGGTAAGGGATGCTTTGAAAATTATCAAGCAGTATCAGGACCCTATTATAGATGAGAGAATACGAAAGTGGAGGTGCTCTAATCAGGAAAATAGGATCAAGGAGCCTGTAGAGGAGAATTGCCTTCTCGATGTTTTCGTCTCTCTAAAAGGTGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCATCGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

271

Amino Acids

31.4

Weight (kDa)

8.83

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	20 - 271	3.4e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	707
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	4 cut(s)	75, 203, 222, 452
AflIII	ACRYGT	2 cut(s)	270, 502
AgsI	TTSAA	5 cut(s)	136, 277, 442, 491, 622
AjiI	CACGTC	2 cut(s)	271, 505
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	2 cut(s)	782, 811
AluI	AGCT	2 cut(s)	782, 811
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	4 cut(s)	347, 511, 568, 748
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	766
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	479, 643
AsuHPI	GGTGA	3 cut(s)	102, 176, 394
AvaII	GGWCC	1 cut(s)	643
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	3 cut(s)	21, 467, 755
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	2 cut(s)	24, 562
BcoDI	GTCTC	4 cut(s)	347, 511, 568, 748
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	346, 711
BfuI	GTATCC	2 cut(s)	24, 562
BisI	GCNGC	1 cut(s)	767
BlsI	GCNGC	1 cut(s)	768
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	643
BmgBI	CACGTC	2 cut(s)	271, 505
BmgT120I	GGNCC	2 cut(s)	479, 643
BmiI	GGNNCC	2 cut(s)	645, 708
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	167, 604
BpmI	CTGGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	4 cut(s)	438, 478, 601, 619
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	683
BsmAI	GTCTC	4 cut(s)	347, 511, 568, 748
BsmBI	CGTCTC	2 cut(s)	511, 748
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	481
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	3 cut(s)	96, 435, 699
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	645, 708
BspPI	GGATC	1 cut(s)	707
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	3 cut(s)	96, 435, 699
BssSI	CACGAG	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	214, 350
Bst6I	CTCTTC	2 cut(s)	247, 460
BstBAI	YACGTR	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	438, 478, 601, 619
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	99, 438, 702
BstMAI	GTCTC	4 cut(s)	347, 511, 568, 748
BstMBI	GATC	3 cut(s)	96, 435, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	346, 711
BstSNI	TACGTA	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuI	GTATCC	2 cut(s)	24, 562
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	566
BtrI	CACGTC	2 cut(s)	271, 505
BtsCI	GGATG	4 cut(s)	438, 478, 601, 619
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	57, 242, 299
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	479, 643
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	74, 202, 221, 451
CviAII	CATG	3 cut(s)	35, 92, 567
CviJI	RGCY	9 cut(s)	179, 263, 298, 481, 571, 709, 769, 782, 811
CviKI_1	RGCY	9 cut(s)	179, 263, 298, 481, 571, 709, 769, 782, 811
CviQI	GTAC	4 cut(s)	74, 202, 221, 451
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	3 cut(s)	98, 437, 701
DpnII	GATC	3 cut(s)	96, 435, 699
Eam1104I	CTCTTC	2 cut(s)	247, 460
EarI	CTCTTC	2 cut(s)	247, 460
Eco105I	TACGTA	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	804
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	566
Esp3I	CGTCTC	2 cut(s)	511, 748
FaeI	CATG	3 cut(s)	38, 95, 570
FaiI	YATR	9 cut(s)	22, 36, 93, 176, 534, 540, 568, 587, 653
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	3 cut(s)	34, 91, 566
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	767
FokI	GGATG	4 cut(s)	445, 485, 608, 626
Fsp4HI	GCNGC	1 cut(s)	767
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	481
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	38, 95, 570
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	277, 288
HphI	GGTGA	3 cut(s)	102, 176, 394
Hpy166II	GTNNAC	2 cut(s)	74, 268
Hpy188I	TCNGA	2 cut(s)	45, 556
Hpy188III	TCNNGA	6 cut(s)	133, 162, 285, 641, 689, 731
Hpy8I	GTNNAC	2 cut(s)	74, 268
Hpy99I	CGWCG	2 cut(s)	149, 272
HpyAV	CCTTC	5 cut(s)	50, 423, 572, 598, 737
HpyCH4III	ACNGT	2 cut(s)	214, 350
HpyCH4IV	ACGT	3 cut(s)	270, 504, 536
HpyCH4V	TGCA	4 cut(s)	398, 532, 542, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	572
HpySE526I	ACGT	3 cut(s)	270, 504, 536
Hsp92II	CATG	3 cut(s)	38, 95, 570
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	96, 435, 699
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	2 cut(s)	167, 604
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	3 cut(s)	270, 504, 536
MalI	GATC	3 cut(s)	98, 437, 701
MboI	GATC	3 cut(s)	96, 435, 699
MboII	GAAGA	8 cut(s)	253, 264, 430, 477, 503, 506, 613, 797
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	4 cut(s)	117, 128, 624, 721
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	441, 463, 470, 669, 709
Mph1103I	ATGCAT	1 cut(s)	544
MslI	CAYNNNNRTG	3 cut(s)	25, 173, 537
MspA1I	CMGCKG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	96, 435, 699
NlaIII	CATG	3 cut(s)	38, 95, 570
NlaIV	GGNNCC	2 cut(s)	645, 708
NsiI	ATGCAT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	768
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	537
PpuMI	RGGWCCY	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	645, 708
PspPI	GGNCC	2 cut(s)	479, 643
PspPPI	RGGWCCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	75, 203, 222, 452
RsaNI	GTAC	4 cut(s)	74, 202, 221, 451
RseI	CAYNNNNRTG	3 cut(s)	25, 173, 537
SalI	GTCGAC	1 cut(s)	266
SatI	GCNGC	1 cut(s)	767
Sau3AI	GATC	3 cut(s)	96, 435, 699
Sau96I	GGNCC	2 cut(s)	479, 643
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	2 cut(s)	167, 604
SfcI	CTRYAG	2 cut(s)	346, 711
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	3 cut(s)	25, 173, 537
SnaBI	TACGTA	1 cut(s)	537
Sse9I	AATT	4 cut(s)	117, 128, 624, 721
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	214, 350
TaiI	ACGT	3 cut(s)	273, 507, 539
TaqI	TCGA	5 cut(s)	267, 303, 359, 732, 807
TasI	AATT	4 cut(s)	117, 128, 624, 721
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	3 cut(s)	64, 242, 299
TseI	GCWGC	1 cut(s)	766
TspDTI	ATGAA	2 cut(s)	80, 333
TspRI	CASTG	3 cut(s)	64, 242, 299
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.