Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

33230124 .. 33230447

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1235900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTCTTGCATGTGTACACATTCTGTGTATCGGATTATCTTCCCTGGCTCAGAGTGTTTGACATAGGCGGCCATGCGAAAAAGGTGAGAGATGCTTTGAAGATTACCAAGCAGTATCAAGACCCTGTTATAAACGAGAGATTACAAGAATGGAGAGATGGGAAAAGGACGGAGCCTGCGGACCTGCTTGATGTTTTCATTTCACTCAAAGATGCAAATGGACTGCCTTTACTCTCTAGTGAAGAAATCAAAGCGCAAATCACAGTGAGATATTCTTACCACCCTCGAATATTTTGGATCCTTTGTCAATGTTTAATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

108

Amino Acids

12.55

Weight (kDa)

7.73

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 88	1.3e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	192
AciI	CCGC	2 cut(s)	69, 179
AclWI	GGATC	2 cut(s)	292, 305
AcoI	YGGCCR	1 cut(s)	70
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	44
AlwI	GGATC	2 cut(s)	292, 305
AoxI	GGCC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	297
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	46
BfaI	CTAG	2 cut(s)	237, 322
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	174, 299
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	82, 202
BsaJI	CCNNGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	2 cut(s)	69, 179
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	174, 299
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	292, 305
BsrGI	TGTACA	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	11, 74
CviJI	RGCY	3 cut(s)	49, 72, 175
CviKI_1	RGCY	3 cut(s)	49, 72, 175
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	14, 77
FaiI	YATR	4 cut(s)	12, 65, 75, 131
FatI	CATG	2 cut(s)	10, 73
Fnu4HI	GCNGC	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	2 cut(s)	237, 322
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	14, 77
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	16, 18
Hpy188I	TCNGA	2 cut(s)	34, 53
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	16, 18
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	10, 215
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	14, 77
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	31, 58, 138, 189, 197
LweI	GCATC	2 cut(s)	82, 202
MaeI	CTAG	2 cut(s)	237, 322
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	3 cut(s)	32, 112, 254
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	1 cut(s)	315
MnlI	CCTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	14, 77
NlaIV	GGNNCC	2 cut(s)	174, 299
NspI	RCATGY	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	174, 299
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	2 cut(s)	87, 186
SfaNI	GCATC	2 cut(s)	82, 202
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	69, 179
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	237, 322
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	2 cut(s)	237, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.