Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001167

Physical Location & Seq

Genomic Coordinates Forward (+)

16313119 .. 16313769

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTATATATTTTCTGAACAGGAACTACAAGTTGCCACGGTGGATAATCCCTCCAATATAGCAGAGTGGGCTCTATCAGAAATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGATAGTGGGAATTGACATGCTTGTTCAAGAATCTCATATCCGGCATCTCCCTTACATAAGGGCTTGTGCAAGAGAATCGCTCAGGCTGCATCCAGTTGCACCATTCAATGTTCCCCATTTTTCCACTGCTGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTCTTCTAAGTCGTTTAGGCCTCGGACGCAACCCCAAAGTCTGGGAAAACCCGTTGAGATTCGACCCCGAGCGTCATCTAAGTGGAGATGCCAGTCAACAAGTAGAGCTGGAAGAACGTGATCTGAGGTTCATTTCATTTACTACTGGAAGGAGAGGTTGCATTGGTGGTACGCTTGGGACTACCATAACTGTGATGCTCCTTGCTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCCAAGGTGGATAAGATTGACCTCACTGAGGCTCCAACCCTTTTCAAGCTCAATCCATTGCATGCACATGCTAAACCTCGCTTGCCTGCTGCTATGTACCCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

216

Amino Acids

24.28

Weight (kDa)

6.66

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	9 - 199	6.1e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05260 AT5G05260 AT5G35917 AT5G35920
fragaria_vesca	FvH4_3g09210
malus_domestica	MD10G1235800.v1.1 MD10G1235900.v1.1
prunus_persica	Prupe.7G129100_v2.0.a1 Prupe.7G129500_v2.0.a1
pyrus_communis	pycom10g19740
rosa_chinensis	RchiOBHm_Chr1g0327171 RchiOBHm_Chr3g0470321 RchiOBHm_Chr3g0470341 RchiOBHm_Chr3g0472221 RchiOBHm_Chr3g0472231 RchiOBHm_Chr7g0218701
rosa_laevigata	RLG00000024276 RLG00000030037
rosa_multiflora	Rmu_sc0000449.1_g000025 Rmu_sc0000449.1_g000027 Rmu_sc0001093.1_g000013 Rmu_sc0001093.1_g000015 Rmu_sc0001279.1_g000009 Rmu_sc0002532.1_g000045 Rmu_sc0002532.1_g000046
rosa_roxburghii	Rroxscaffold_4G00323120 Rroxscaffold_4G00323180 Rroxscaffold_5G00348690 Rroxscaffold_5G00348710 Rroxscaffold_6G00410930
rosa_rugosa	Rorug04G0047400
rosa_samantha	Rh1AG081400 Rh1BG064600 Rh1CG079600 Rh1DG085800 Rh3AG158100 Rh3AG175300 Rh3BG102500 Rh3BG182400 Rh3BG182600 Rh3BG200700 Rh3BG200900 Rh3CG173100 Rh3CG173300 Rh3CG192100 Rh3CG199300 Rh3DG103500 Rh3DG174100 Rh3DG192300 Rh4BG117000 Rh4BG117100 Rh7AG321800 Rh7CG338400
rosa_wichuraiana	Rw1G006430 Rw3G008370 Rw3G015020 Rw3G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	475, 641
AfiI	CCNNNNNNNGG	2 cut(s)	345, 571
AgsI	TTSAA	4 cut(s)	158, 238, 521, 589
AluBI	AGCT	2 cut(s)	412, 592
AluI	AGCT	2 cut(s)	412, 592
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	217, 632
AvaI	CYCGRG	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	204, 619
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	218, 633
BlsI	GCNGC	2 cut(s)	219, 634
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	576
BmsI	GCATC	6 cut(s)	90, 184, 229, 253, 382, 489
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
Bpu10I	CCTNAGC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	36, 325, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 571
Bse1I	ACTGG	3 cut(s)	224, 396, 454
Bse3DI	GCAATG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	36, 325, 546
BseGI	GGATG	2 cut(s)	220, 285
BseLI	CCNNNNNNNGG	2 cut(s)	345, 571
BseMI	GCAATG	1 cut(s)	599
BseMII	CTCAG	4 cut(s)	87, 226, 419, 561
BseNI	ACTGG	3 cut(s)	224, 396, 454
BseXI	GCAGC	2 cut(s)	204, 619
BshFI	GGCC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	2 cut(s)	345, 571
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	4 cut(s)	88, 225, 420, 562
BspLI	GGNNCC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	599
BsrI	ACTGG	3 cut(s)	224, 396, 454
BssECI	CCNNGG	3 cut(s)	36, 325, 546
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	40, 496
BstC8I	GCNNGC	5 cut(s)	277, 539, 606, 626, 630
BstDEI	CTNAG	6 cut(s)	96, 212, 311, 383, 428, 570
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	220, 285
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 217, 272, 330
BstNSI	RCATGY	4 cut(s)	151, 541, 608, 614
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	204, 619
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	220, 285
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 567
Cac8I	GCNNGC	5 cut(s)	277, 539, 606, 626, 630
CseI	GACGC	2 cut(s)	339, 365
Csp6I	GTAC	2 cut(s)	474, 640
CviAII	CATG	5 cut(s)	148, 531, 538, 605, 611
CviJI	RGCY	9 cut(s)	71, 194, 217, 279, 324, 412, 514, 575, 592
CviKI_1	RGCY	9 cut(s)	71, 194, 217, 279, 324, 412, 514, 575, 592
CviQI	GTAC	2 cut(s)	474, 640
DdeI	CTNAG	6 cut(s)	96, 212, 311, 383, 428, 570
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	5 cut(s)	151, 534, 541, 608, 614
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	5 cut(s)	147, 530, 537, 604, 610
Fnu4HI	GCNGC	2 cut(s)	218, 633
FokI	GGATG	2 cut(s)	207, 272
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	218, 633
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	2 cut(s)	218, 633
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	2 cut(s)	339, 365
Hin1II	CATG	5 cut(s)	151, 534, 541, 608, 614
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HinfI	GANTC	3 cut(s)	161, 206, 363
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	401, 528
Hpy188I	TCNGA	4 cut(s)	16, 79, 329, 429
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	401, 528
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	40, 496
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	6 cut(s)	200, 220, 230, 465, 604, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 217, 272, 330
HpyF3I	CTNAG	6 cut(s)	96, 212, 311, 383, 428, 570
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	5 cut(s)	151, 534, 541, 608, 614
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	507, 534, 580
Lsp1109I	GCAGC	2 cut(s)	204, 619
LweI	GCATC	6 cut(s)	90, 184, 229, 253, 382, 489
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	421
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	299, 428, 509
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	8 cut(s)	61, 112, 335, 423, 452, 565, 575, 630
MslI	CAYNNNNRTG	3 cut(s)	384, 494, 609
MspI	CCGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	68, 217, 272, 330
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	5 cut(s)	151, 534, 541, 608, 614
NlaIV	GGNNCC	1 cut(s)	576
NspI	RCATGY	4 cut(s)	151, 541, 608, 614
PaeI	GCATGC	2 cut(s)	541, 608
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	161, 206, 363
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	219, 634
PspN4I	GGNNCC	1 cut(s)	576
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
RsaI	GTAC	2 cut(s)	475, 641
RsaNI	GTAC	2 cut(s)	474, 640
RseI	CAYNNNNRTG	3 cut(s)	384, 494, 609
SatI	GCNGC	2 cut(s)	218, 633
Sau3AI	GATC	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	9 cut(s)	97, 414, 424, 434, 463, 552, 567, 594, 622
SfaNI	GCATC	6 cut(s)	90, 184, 229, 253, 382, 489
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	3 cut(s)	384, 494, 609
SphI	GCATGC	2 cut(s)	541, 608
Sse9I	AATT	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	40, 496
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	366
TasI	AATT	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	161, 206, 363
TscAI	CASTG	2 cut(s)	262, 574
TseI	GCWGC	2 cut(s)	217, 632
TspDTI	ATGAA	3 cut(s)	274, 424, 429
TspRI	CASTG	2 cut(s)	262, 574
Van91I	CCANNNNNTGG	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	569
XceI	RCATGY	4 cut(s)	151, 541, 608, 614
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.